HEADER OXIDOREDUCTASE 08-FEB-15 4Y1P TITLE CRYSTAL STRUCTURE OF 3-ISOPROPYLMALATE DEHYDROGENASE (SACI_0600) FROM TITLE 2 SULFOLOBUS ACIDOCALDARIUS COMPLEX WITH 3-ISOPROPYLMALATE AND MG2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-ISOPROPYLMALATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.85; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS ACIDOCALDARIUS DSM 639; SOURCE 3 ORGANISM_TAXID: 330779; SOURCE 4 STRAIN: DSM 639; SOURCE 5 GENE: LEUB, SACI_0600; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-SACI_0600 KEYWDS BETA-DECARBOXYLATING DEHYROGENASE, 3-ISOPROPYLMALATE DEHYDROGENASE, KEYWDS 2 SULFOLOBUS ACIDOCALDARIUS, CLOSED FORM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAKAHASHI,T.TOMITA,T.KUZUYAMA,M.NISHIYAMA REVDAT 4 08-NOV-23 4Y1P 1 LINK REVDAT 3 05-FEB-20 4Y1P 1 REMARK REVDAT 2 14-DEC-16 4Y1P 1 JRNL REVDAT 1 09-MAR-16 4Y1P 0 JRNL AUTH K.TAKAHASHI,F.NAKANISHI,T.TOMITA,N.AKIYAMA,K.LASSAK, JRNL AUTH 2 S.V.ALBERS,T.KUZUYAMA,M.NISHIYAMA JRNL TITL CHARACTERIZATION OF TWO BETA-DECARBOXYLATING DEHYDROGENASES JRNL TITL 2 FROM SULFOLOBUS ACIDOCALDARIUS JRNL REF EXTREMOPHILES V. 20 843 2016 JRNL REFN ESSN 1433-4909 JRNL PMID 27590116 JRNL DOI 10.1007/S00792-016-0872-4 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 33237 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1755 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2389 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5089 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.288 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.225 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.974 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5205 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5158 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7036 ; 1.438 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11873 ; 0.841 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 674 ; 6.191 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;30.759 ;24.476 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 939 ;17.598 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;18.625 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 831 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5860 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1079 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2687 ; 1.295 ; 2.246 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2686 ; 1.293 ; 2.245 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3355 ; 2.054 ; 3.358 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3356 ; 2.055 ; 3.359 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2518 ; 1.974 ; 2.565 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2507 ; 1.962 ; 2.552 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3661 ; 3.244 ; 3.700 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5798 ; 4.542 ;18.066 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5764 ; 4.501 ;18.019 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Y1P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35126 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1A05 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, 0.1 M REMARK 280 CACODYLATE (PH6.5), 0.2 M NACL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.25950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.25950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.51200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.35950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.51200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.35950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.25950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.51200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.35950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.25950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.51200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.35950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -152.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 105 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 96 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 96 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 81 -71.58 -104.54 REMARK 500 GLU A 121 -133.64 -123.13 REMARK 500 ASP A 122 -129.90 64.63 REMARK 500 ARG A 161 -122.17 -116.04 REMARK 500 MET A 174 73.29 -104.10 REMARK 500 ASN A 210 79.85 -155.20 REMARK 500 ASP A 215 -76.03 -104.57 REMARK 500 SER A 237 137.23 -173.96 REMARK 500 TYR A 314 70.37 -118.20 REMARK 500 SER A 322 22.01 -142.29 REMARK 500 GLU B 121 -136.50 -126.14 REMARK 500 ASP B 122 -127.19 66.16 REMARK 500 ARG B 161 -120.16 -118.89 REMARK 500 ASP B 215 -75.51 -116.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 201 OD2 REMARK 620 2 ASP A 225 OD1 64.4 REMARK 620 3 IPM A 402 O1 69.0 4.7 REMARK 620 4 IPM A 402 O3 62.2 2.7 6.8 REMARK 620 5 HOH A 501 O 61.3 7.8 10.0 5.6 REMARK 620 6 HOH A 522 O 66.4 8.4 7.8 7.7 5.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 201 OD2 REMARK 620 2 ASP B 225 OD1 60.6 REMARK 620 3 IPM B 402 O1 64.4 3.8 REMARK 620 4 IPM B 402 O2 58.0 3.0 6.5 REMARK 620 5 HOH B 503 O 58.0 7.7 9.7 5.8 REMARK 620 6 HOH B 524 O 62.5 7.7 7.6 7.5 4.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPM A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPM B 402 DBREF 4Y1P A 1 337 UNP Q4JB37 Q4JB37_SULAC 1 337 DBREF 4Y1P B 1 337 UNP Q4JB37 Q4JB37_SULAC 1 337 SEQRES 1 A 337 MET GLY PHE VAL VAL ALA LEU ILE GLN GLY ASP GLY ILE SEQRES 2 A 337 GLY PRO GLU VAL VAL SER LYS SER LYS THR ILE LEU ALA SEQRES 3 A 337 ARG LEU ASN GLU LYS PHE SER LEU PRO ILE GLU TYR ILE SEQRES 4 A 337 GLU VAL GLU ALA GLY ASP THR THR LYS ASN LYS PHE GLY SEQRES 5 A 337 ASP ALA LEU PRO LYS ASP SER LEU ARG VAL ILE GLU LYS SEQRES 6 A 337 ALA ASP MET ILE LEU LYS GLY PRO VAL GLY GLU THR ALA SEQRES 7 A 337 ALA ASP VAL VAL VAL LYS LEU ARG LEU MET TYR ASP LEU SEQRES 8 A 337 TYR ALA ASN LEU ARG PRO ALA LYS SER LEU PRO GLY LEU SEQRES 9 A 337 GLU ASN LYS PHE GLY ASP VAL ASP ILE LEU VAL VAL ARG SEQRES 10 A 337 GLU ASN THR GLU ASP LEU TYR LYS GLY LEU GLU HIS VAL SEQRES 11 A 337 ILE SER ASP GLY VAL THR VAL GLY ILE LYS VAL ILE THR SEQRES 12 A 337 ARG ALA ALA SER THR ARG ILE ALA GLN VAL ALA LEU ASN SEQRES 13 A 337 GLN ALA LEU ARG ARG LYS LYS LYS VAL VAL CYS VAL HIS SEQRES 14 A 337 LYS SER ASN VAL MET ARG ILE THR ASP GLY LEU PHE ALA SEQRES 15 A 337 GLU SER CYS ARG ASN VAL LEU LYS GLY LYS VAL GLU TYR SEQRES 16 A 337 SER GLU MET TYR VAL ASP ALA ALA ALA ALA ASN LEU VAL SEQRES 17 A 337 ARG ASN PRO GLN ALA PHE ASP VAL ILE VAL THR GLU ASN SEQRES 18 A 337 THR TYR GLY ASP ILE LEU SER ASP GLU ALA GLY GLN ILE SEQRES 19 A 337 ALA GLY SER LEU GLY ILE SER PRO SER ALA ASN ILE GLY SEQRES 20 A 337 ASP ARG LYS SER LEU PHE GLU PRO VAL HIS GLY ALA ALA SEQRES 21 A 337 PHE ASP ILE ALA GLY LYS ASN ILE ALA ASN PRO THR ALA SEQRES 22 A 337 PHE LEU LEU SER VAL GLY MET MET LEU ASP ARG MET GLN SEQRES 23 A 337 GLU LEU SER GLY ASP ILE ARG TYR ASN ASN ALA ALA LYS SEQRES 24 A 337 SER LEU ARG ASP ALA ILE TYR SER VAL TYR SER GLU GLY SEQRES 25 A 337 LYS TYR LEU THR PRO ASP VAL GLY GLY SER SER THR THR SEQRES 26 A 337 ASP GLU MET ILE SER ALA ILE ARG SER LYS ILE GLY SEQRES 1 B 337 MET GLY PHE VAL VAL ALA LEU ILE GLN GLY ASP GLY ILE SEQRES 2 B 337 GLY PRO GLU VAL VAL SER LYS SER LYS THR ILE LEU ALA SEQRES 3 B 337 ARG LEU ASN GLU LYS PHE SER LEU PRO ILE GLU TYR ILE SEQRES 4 B 337 GLU VAL GLU ALA GLY ASP THR THR LYS ASN LYS PHE GLY SEQRES 5 B 337 ASP ALA LEU PRO LYS ASP SER LEU ARG VAL ILE GLU LYS SEQRES 6 B 337 ALA ASP MET ILE LEU LYS GLY PRO VAL GLY GLU THR ALA SEQRES 7 B 337 ALA ASP VAL VAL VAL LYS LEU ARG LEU MET TYR ASP LEU SEQRES 8 B 337 TYR ALA ASN LEU ARG PRO ALA LYS SER LEU PRO GLY LEU SEQRES 9 B 337 GLU ASN LYS PHE GLY ASP VAL ASP ILE LEU VAL VAL ARG SEQRES 10 B 337 GLU ASN THR GLU ASP LEU TYR LYS GLY LEU GLU HIS VAL SEQRES 11 B 337 ILE SER ASP GLY VAL THR VAL GLY ILE LYS VAL ILE THR SEQRES 12 B 337 ARG ALA ALA SER THR ARG ILE ALA GLN VAL ALA LEU ASN SEQRES 13 B 337 GLN ALA LEU ARG ARG LYS LYS LYS VAL VAL CYS VAL HIS SEQRES 14 B 337 LYS SER ASN VAL MET ARG ILE THR ASP GLY LEU PHE ALA SEQRES 15 B 337 GLU SER CYS ARG ASN VAL LEU LYS GLY LYS VAL GLU TYR SEQRES 16 B 337 SER GLU MET TYR VAL ASP ALA ALA ALA ALA ASN LEU VAL SEQRES 17 B 337 ARG ASN PRO GLN ALA PHE ASP VAL ILE VAL THR GLU ASN SEQRES 18 B 337 THR TYR GLY ASP ILE LEU SER ASP GLU ALA GLY GLN ILE SEQRES 19 B 337 ALA GLY SER LEU GLY ILE SER PRO SER ALA ASN ILE GLY SEQRES 20 B 337 ASP ARG LYS SER LEU PHE GLU PRO VAL HIS GLY ALA ALA SEQRES 21 B 337 PHE ASP ILE ALA GLY LYS ASN ILE ALA ASN PRO THR ALA SEQRES 22 B 337 PHE LEU LEU SER VAL GLY MET MET LEU ASP ARG MET GLN SEQRES 23 B 337 GLU LEU SER GLY ASP ILE ARG TYR ASN ASN ALA ALA LYS SEQRES 24 B 337 SER LEU ARG ASP ALA ILE TYR SER VAL TYR SER GLU GLY SEQRES 25 B 337 LYS TYR LEU THR PRO ASP VAL GLY GLY SER SER THR THR SEQRES 26 B 337 ASP GLU MET ILE SER ALA ILE ARG SER LYS ILE GLY HET MG A 401 1 HET IPM A 402 12 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET MG B 401 1 HET IPM B 402 12 HETNAM MG MAGNESIUM ION HETNAM IPM 3-ISOPROPYLMALIC ACID HETNAM SO4 SULFATE ION FORMUL 3 MG 2(MG 2+) FORMUL 4 IPM 2(C7 H12 O5) FORMUL 5 SO4 3(O4 S 2-) FORMUL 10 HOH *225(H2 O) HELIX 1 AA1 ILE A 13 PHE A 32 1 20 HELIX 2 AA2 GLY A 44 GLY A 52 1 9 HELIX 3 AA3 PRO A 56 ALA A 66 1 11 HELIX 4 AA4 THR A 77 ASP A 90 1 14 HELIX 5 AA5 THR A 143 ARG A 160 1 18 HELIX 6 AA6 ILE A 176 LYS A 190 1 15 HELIX 7 AA7 VAL A 200 ASN A 210 1 11 HELIX 8 AA8 PRO A 211 PHE A 214 5 4 HELIX 9 AA9 GLU A 220 GLY A 236 1 17 HELIX 10 AB1 SER A 237 ILE A 240 5 4 HELIX 11 AB2 ALA A 260 ALA A 264 5 5 HELIX 12 AB3 PRO A 271 GLY A 290 1 20 HELIX 13 AB4 ASP A 291 GLY A 312 1 22 HELIX 14 AB5 THR A 316 GLY A 320 5 5 HELIX 15 AB6 THR A 324 ILE A 336 1 13 HELIX 16 AB7 ILE B 13 SER B 33 1 21 HELIX 17 AB8 GLY B 44 GLY B 52 1 9 HELIX 18 AB9 PRO B 56 ALA B 66 1 11 HELIX 19 AC1 THR B 77 TYR B 89 1 13 HELIX 20 AC2 THR B 143 ARG B 160 1 18 HELIX 21 AC3 ILE B 176 LYS B 190 1 15 HELIX 22 AC4 VAL B 200 ASN B 210 1 11 HELIX 23 AC5 PRO B 211 PHE B 214 5 4 HELIX 24 AC6 GLU B 220 ALA B 235 1 16 HELIX 25 AC7 ALA B 260 ALA B 264 5 5 HELIX 26 AC8 PRO B 271 GLY B 290 1 20 HELIX 27 AC9 ILE B 292 GLY B 312 1 21 HELIX 28 AD1 THR B 316 GLY B 320 5 5 HELIX 29 AD2 THR B 324 LYS B 335 1 12 SHEET 1 AA110 ILE A 36 VAL A 41 0 SHEET 2 AA110 PHE A 3 ILE A 8 1 N VAL A 5 O GLU A 37 SHEET 3 AA110 MET A 68 LYS A 71 1 O MET A 68 N ALA A 6 SHEET 4 AA110 SER A 251 PRO A 255 1 O PHE A 253 N ILE A 69 SHEET 5 AA110 PRO A 242 ILE A 246 -1 N ASN A 245 O LEU A 252 SHEET 6 AA110 ALA A 93 LYS A 99 -1 N LEU A 95 O ALA A 244 SHEET 7 AA110 ASP A 112 GLU A 118 -1 O ILE A 113 N ALA A 98 SHEET 8 AA110 VAL A 216 THR A 219 1 O ILE A 217 N VAL A 116 SHEET 9 AA110 LYS A 164 HIS A 169 1 N VAL A 166 O VAL A 216 SHEET 10 AA110 GLU A 194 TYR A 199 1 O GLU A 194 N VAL A 165 SHEET 1 AA2 2 GLU A 128 SER A 132 0 SHEET 2 AA2 2 VAL A 135 GLY A 138 -1 O VAL A 135 N ILE A 131 SHEET 1 AA310 ILE B 36 VAL B 41 0 SHEET 2 AA310 PHE B 3 ILE B 8 1 N VAL B 5 O GLU B 37 SHEET 3 AA310 MET B 68 LYS B 71 1 O LEU B 70 N ALA B 6 SHEET 4 AA310 SER B 251 PRO B 255 1 O PHE B 253 N LYS B 71 SHEET 5 AA310 PRO B 242 ILE B 246 -1 N ASN B 245 O LEU B 252 SHEET 6 AA310 ALA B 93 LYS B 99 -1 N ALA B 93 O ILE B 246 SHEET 7 AA310 ASP B 112 GLU B 118 -1 O ILE B 113 N ALA B 98 SHEET 8 AA310 VAL B 216 THR B 219 1 O ILE B 217 N VAL B 116 SHEET 9 AA310 LYS B 164 HIS B 169 1 N VAL B 166 O VAL B 218 SHEET 10 AA310 GLU B 194 TYR B 199 1 O SER B 196 N CYS B 167 SHEET 1 AA4 2 GLU B 128 SER B 132 0 SHEET 2 AA4 2 VAL B 135 GLY B 138 -1 O VAL B 135 N SER B 132 LINK OD2 ASP A 201 MG MG A 401 1555 4555 2.12 LINK OD1 ASP A 225 MG MG A 401 1555 1555 1.98 LINK MG MG A 401 O1 IPM A 402 1555 1555 2.14 LINK MG MG A 401 O3 IPM A 402 1555 1555 2.15 LINK MG MG A 401 O HOH A 501 1555 1555 2.12 LINK MG MG A 401 O HOH A 522 1555 1555 2.10 LINK OD2 ASP B 201 MG MG B 401 1555 4555 2.05 LINK OD1 ASP B 225 MG MG B 401 1555 1555 2.00 LINK MG MG B 401 O1 IPM B 402 1555 1555 2.18 LINK MG MG B 401 O2 IPM B 402 1555 1555 2.09 LINK MG MG B 401 O HOH B 503 1555 1555 2.02 LINK MG MG B 401 O HOH B 524 1555 4555 2.04 CISPEP 1 ASN A 106 LYS A 107 0 13.48 CISPEP 2 ILE A 336 GLY A 337 0 -6.07 CISPEP 3 PRO B 102 GLY B 103 0 -26.21 SITE 1 AC1 6 ASP A 201 ASP A 225 ASP A 229 IPM A 402 SITE 2 AC1 6 HOH A 501 HOH A 522 SITE 1 AC2 14 ALA A 78 ARG A 86 ARG A 96 ARG A 117 SITE 2 AC2 14 TYR A 124 LYS A 170 VAL A 173 ASP A 201 SITE 3 AC2 14 ASP A 225 MG A 401 HOH A 501 HOH A 520 SITE 4 AC2 14 HOH A 522 HOH A 595 SITE 1 AC3 3 ASP A 291 ILE A 292 ARG A 293 SITE 1 AC4 3 GLU A 197 MET A 198 TYR A 199 SITE 1 AC5 2 ARG A 160 LYS B 163 SITE 1 AC6 5 ASP B 201 ASP B 225 IPM B 402 HOH B 503 SITE 2 AC6 5 HOH B 524 SITE 1 AC7 11 ARG B 86 ARG B 96 ARG B 117 TYR B 124 SITE 2 AC7 11 LYS B 170 VAL B 173 ASP B 201 ASP B 225 SITE 3 AC7 11 MG B 401 HOH B 503 HOH B 524 CRYST1 89.024 136.719 112.519 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011233 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007314 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008887 0.00000