HEADER IMMUNE SYSTEM 09-FEB-15 4Y1S TITLE STRUCTURAL BASIS FOR CA2+-MEDIATED INTERACTION OF THE PERFORIN C2 TITLE 2 DOMAIN WITH LIPID MEMBRANES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERFORIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C2 DOMAIN (UNP RESIDUES 410-535); COMPND 5 SYNONYM: P1,CYTOLYSIN,LYMPHOCYTE PORE-FORMING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PRF1, PFP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TOP10F`; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCOMB3X KEYWDS PERFORIN, C2 DOMAIN, CALCIUM BINDING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.J.CONROY,H.YAGI,J.C.WHISSTOCK,R.S.NORTON REVDAT 5 27-SEP-23 4Y1S 1 LINK REVDAT 4 13-DEC-17 4Y1S 1 SOURCE JRNL REMARK REVDAT 3 28-OCT-15 4Y1S 1 JRNL REVDAT 2 09-SEP-15 4Y1S 1 JRNL REVDAT 1 02-SEP-15 4Y1S 0 JRNL AUTH H.YAGI,P.J.CONROY,E.W.LEUNG,R.H.LAW,J.A.TRAPANI, JRNL AUTH 2 I.VOSKOBOINIK,J.C.WHISSTOCK,R.S.NORTON JRNL TITL STRUCTURAL BASIS FOR CA2+-MEDIATED INTERACTION OF THE JRNL TITL 2 PERFORIN C2 DOMAIN WITH LIPID MEMBRANES. JRNL REF J.BIOL.CHEM. V. 290 25213 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26306037 JRNL DOI 10.1074/JBC.M115.668384 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.4916 - 2.7546 1.00 2965 169 0.1701 0.1754 REMARK 3 2 2.7546 - 2.1865 1.00 2825 167 0.1684 0.1628 REMARK 3 3 2.1865 - 1.9101 1.00 2817 136 0.1488 0.1989 REMARK 3 4 1.9101 - 1.7355 1.00 2789 142 0.1595 0.2107 REMARK 3 5 1.7355 - 1.6111 0.99 2774 141 0.1866 0.2488 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1016 REMARK 3 ANGLE : 1.286 1381 REMARK 3 CHIRALITY : 0.070 145 REMARK 3 PLANARITY : 0.007 185 REMARK 3 DIHEDRAL : 12.311 354 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 410 THROUGH 424 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7332 8.7335 -16.5774 REMARK 3 T TENSOR REMARK 3 T11: 0.0537 T22: 0.0484 REMARK 3 T33: 0.0768 T12: -0.0281 REMARK 3 T13: 0.0046 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 3.5305 L22: 2.1238 REMARK 3 L33: 2.4176 L12: -0.6353 REMARK 3 L13: 1.1527 L23: -0.0673 REMARK 3 S TENSOR REMARK 3 S11: -0.2214 S12: 0.0138 S13: 0.1535 REMARK 3 S21: -0.0410 S22: 0.0680 S23: 0.1694 REMARK 3 S31: -0.0566 S32: -0.2098 S33: 0.0022 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 425 THROUGH 435 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7360 6.9463 -4.2715 REMARK 3 T TENSOR REMARK 3 T11: 0.0851 T22: 0.1378 REMARK 3 T33: 0.1078 T12: 0.0040 REMARK 3 T13: -0.0681 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 7.7765 L22: 4.2728 REMARK 3 L33: 5.9313 L12: 0.4835 REMARK 3 L13: 1.3974 L23: 3.1179 REMARK 3 S TENSOR REMARK 3 S11: -0.0438 S12: -0.0036 S13: -0.4262 REMARK 3 S21: 0.4104 S22: -0.2569 S23: -0.3992 REMARK 3 S31: 0.5933 S32: 0.3694 S33: -0.1158 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 436 THROUGH 470 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8630 14.1571 -11.6832 REMARK 3 T TENSOR REMARK 3 T11: 0.0753 T22: 0.0483 REMARK 3 T33: 0.0492 T12: -0.0028 REMARK 3 T13: -0.0174 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 3.0653 L22: 1.3319 REMARK 3 L33: 2.7404 L12: -0.5616 REMARK 3 L13: 1.9324 L23: -0.4898 REMARK 3 S TENSOR REMARK 3 S11: -0.1481 S12: 0.0242 S13: 0.1405 REMARK 3 S21: 0.1034 S22: -0.0024 S23: 0.0190 REMARK 3 S31: -0.0700 S32: 0.0830 S33: 0.1299 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 471 THROUGH 483 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2892 10.2349 -20.5013 REMARK 3 T TENSOR REMARK 3 T11: 0.0567 T22: 0.1450 REMARK 3 T33: 0.0653 T12: -0.0110 REMARK 3 T13: 0.0028 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 1.1227 L22: 2.8598 REMARK 3 L33: 1.6837 L12: -0.0840 REMARK 3 L13: -0.6176 L23: -0.0010 REMARK 3 S TENSOR REMARK 3 S11: -0.0737 S12: 0.6121 S13: 0.0777 REMARK 3 S21: -0.0815 S22: 0.0187 S23: 0.2071 REMARK 3 S31: 0.0399 S32: 0.2175 S33: 0.0713 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 484 THROUGH 490 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1624 19.3519 -10.4362 REMARK 3 T TENSOR REMARK 3 T11: 0.1517 T22: 0.2693 REMARK 3 T33: 0.1717 T12: -0.0828 REMARK 3 T13: -0.0571 T23: 0.0864 REMARK 3 L TENSOR REMARK 3 L11: 6.3387 L22: 2.5486 REMARK 3 L33: 0.1264 L12: 3.9271 REMARK 3 L13: 0.0373 L23: -0.0989 REMARK 3 S TENSOR REMARK 3 S11: 0.1073 S12: -0.4255 S13: 0.3059 REMARK 3 S21: 0.2391 S22: -0.4941 S23: -0.2026 REMARK 3 S31: -0.5783 S32: 0.7016 S33: 0.1523 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 491 THROUGH 535 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1336 3.7440 -17.9231 REMARK 3 T TENSOR REMARK 3 T11: 0.0769 T22: 0.0671 REMARK 3 T33: 0.0921 T12: 0.0135 REMARK 3 T13: -0.0092 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 3.4024 L22: 1.3381 REMARK 3 L33: 1.9071 L12: 0.5894 REMARK 3 L13: 1.7257 L23: 0.1473 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: 0.1038 S13: -0.0608 REMARK 3 S21: -0.0888 S22: 0.0093 S23: 0.0841 REMARK 3 S31: 0.0719 S32: 0.0049 S33: -0.0260 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Y1S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953697 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14926 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.611 REMARK 200 RESOLUTION RANGE LOW (A) : 36.482 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.21590 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.54730 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3NSJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 26.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.0, 0.2 M NACL AND 20% REMARK 280 (W/V) POLYETHYLENE GLYCOL 2000 MONOMETHYL ETHER, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.85000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.03850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.60550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.03850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.85000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.60550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 428 REMARK 465 ASP A 429 REMARK 465 ALA A 430 REMARK 465 THR A 431 REMARK 465 GLY A 536 REMARK 465 GLN A 537 REMARK 465 ALA A 538 REMARK 465 GLY A 539 REMARK 465 GLN A 540 REMARK 465 HIS A 541 REMARK 465 HIS A 542 REMARK 465 HIS A 543 REMARK 465 HIS A 544 REMARK 465 HIS A 545 REMARK 465 HIS A 546 REMARK 465 GLY A 547 REMARK 465 ALA A 548 REMARK 465 TYR A 549 REMARK 465 PRO A 550 REMARK 465 TYR A 551 REMARK 465 ASP A 552 REMARK 465 VAL A 553 REMARK 465 PRO A 554 REMARK 465 ASP A 555 REMARK 465 TYR A 556 REMARK 465 ALA A 557 REMARK 465 SER A 558 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 722 O HOH A 765 1.91 REMARK 500 O HOH A 815 O HOH A 816 2.00 REMARK 500 O HOH A 707 O HOH A 766 2.06 REMARK 500 O HOH A 757 O HOH A 771 2.16 REMARK 500 O HOH A 825 O HOH A 832 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 760 O HOH A 787 1455 1.93 REMARK 500 O HOH A 777 O HOH A 786 3554 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 422 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 467 -135.32 52.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 485 O REMARK 620 2 ALA A 488 O 72.0 REMARK 620 3 ASP A 490 OD1 94.1 110.6 REMARK 620 4 HOH A 771 O 90.4 83.0 166.4 REMARK 620 5 HOH A 774 O 166.4 95.3 85.7 93.0 REMARK 620 6 HOH A 811 O 86.4 156.4 79.5 88.0 106.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Y1T RELATED DB: PDB DBREF 4Y1S A 410 535 UNP P10820 PERF_MOUSE 410 535 SEQADV 4Y1S ALA A 427 UNP P10820 TRP 427 ENGINEERED MUTATION SEQADV 4Y1S ALA A 430 UNP P10820 TYR 430 ENGINEERED MUTATION SEQADV 4Y1S ALA A 486 UNP P10820 TYR 486 ENGINEERED MUTATION SEQADV 4Y1S ALA A 488 UNP P10820 TRP 488 ENGINEERED MUTATION SEQADV 4Y1S GLY A 536 UNP P10820 EXPRESSION TAG SEQADV 4Y1S GLN A 537 UNP P10820 EXPRESSION TAG SEQADV 4Y1S ALA A 538 UNP P10820 EXPRESSION TAG SEQADV 4Y1S GLY A 539 UNP P10820 EXPRESSION TAG SEQADV 4Y1S GLN A 540 UNP P10820 EXPRESSION TAG SEQADV 4Y1S HIS A 541 UNP P10820 EXPRESSION TAG SEQADV 4Y1S HIS A 542 UNP P10820 EXPRESSION TAG SEQADV 4Y1S HIS A 543 UNP P10820 EXPRESSION TAG SEQADV 4Y1S HIS A 544 UNP P10820 EXPRESSION TAG SEQADV 4Y1S HIS A 545 UNP P10820 EXPRESSION TAG SEQADV 4Y1S HIS A 546 UNP P10820 EXPRESSION TAG SEQADV 4Y1S GLY A 547 UNP P10820 EXPRESSION TAG SEQADV 4Y1S ALA A 548 UNP P10820 EXPRESSION TAG SEQADV 4Y1S TYR A 549 UNP P10820 EXPRESSION TAG SEQADV 4Y1S PRO A 550 UNP P10820 EXPRESSION TAG SEQADV 4Y1S TYR A 551 UNP P10820 EXPRESSION TAG SEQADV 4Y1S ASP A 552 UNP P10820 EXPRESSION TAG SEQADV 4Y1S VAL A 553 UNP P10820 EXPRESSION TAG SEQADV 4Y1S PRO A 554 UNP P10820 EXPRESSION TAG SEQADV 4Y1S ASP A 555 UNP P10820 EXPRESSION TAG SEQADV 4Y1S TYR A 556 UNP P10820 EXPRESSION TAG SEQADV 4Y1S ALA A 557 UNP P10820 EXPRESSION TAG SEQADV 4Y1S SER A 558 UNP P10820 EXPRESSION TAG SEQRES 1 A 149 GLN ARG GLY LEU ALA HIS LEU VAL VAL SER ASN PHE ARG SEQRES 2 A 149 ALA GLU HIS LEU ALA GLY ASP ALA THR THR ALA THR ASP SEQRES 3 A 149 ALA TYR LEU LYS VAL PHE PHE GLY GLY GLN GLU PHE ARG SEQRES 4 A 149 THR GLY VAL VAL TRP ASN ASN ASN ASN PRO ARG TRP THR SEQRES 5 A 149 ASP LYS MET ASP PHE GLU ASN VAL LEU LEU SER THR GLY SEQRES 6 A 149 GLY PRO LEU ARG VAL GLN VAL TRP ASP ALA ASP ALA GLY SEQRES 7 A 149 ALA ASP ASP ASP LEU LEU GLY SER CYS ASP ARG SER PRO SEQRES 8 A 149 HIS SER GLY PHE HIS GLU VAL THR CYS GLU LEU ASN HIS SEQRES 9 A 149 GLY ARG VAL LYS PHE SER TYR HIS ALA LYS CYS LEU PRO SEQRES 10 A 149 HIS LEU THR GLY GLY THR CYS LEU GLU GLY GLN ALA GLY SEQRES 11 A 149 GLN HIS HIS HIS HIS HIS HIS GLY ALA TYR PRO TYR ASP SEQRES 12 A 149 VAL PRO ASP TYR ALA SER HET CA A 601 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ FORMUL 3 HOH *134(H2 O) SHEET 1 AA1 3 ARG A 459 TRP A 460 0 SHEET 2 AA1 3 LEU A 413 GLU A 424 -1 N PHE A 421 O TRP A 460 SHEET 3 AA1 3 MET A 464 LEU A 470 -1 O MET A 464 N VAL A 418 SHEET 1 AA2 4 ARG A 459 TRP A 460 0 SHEET 2 AA2 4 LEU A 413 GLU A 424 -1 N PHE A 421 O TRP A 460 SHEET 3 AA2 4 ARG A 515 CYS A 524 -1 O LYS A 517 N ARG A 422 SHEET 4 AA2 4 GLY A 503 GLU A 510 -1 N VAL A 507 O PHE A 518 SHEET 1 AA3 4 GLN A 445 ARG A 448 0 SHEET 2 AA3 4 ALA A 436 PHE A 442 -1 N VAL A 440 O PHE A 447 SHEET 3 AA3 4 LEU A 477 ASP A 483 -1 O TRP A 482 N TYR A 437 SHEET 4 AA3 4 ASP A 491 ARG A 498 -1 O ARG A 498 N LEU A 477 SSBOND 1 CYS A 496 CYS A 509 1555 1555 2.05 SSBOND 2 CYS A 524 CYS A 533 1555 1555 2.04 LINK O ASP A 485 CA CA A 601 1555 1555 2.48 LINK O ALA A 488 CA CA A 601 1555 1555 2.44 LINK OD1 ASP A 490 CA CA A 601 1555 1555 2.46 LINK CA CA A 601 O HOH A 771 1555 1555 2.67 LINK CA CA A 601 O HOH A 774 1555 1555 2.29 LINK CA CA A 601 O HOH A 811 1555 1555 2.29 CISPEP 1 GLY A 475 PRO A 476 0 1.46 SITE 1 AC1 6 ASP A 485 ALA A 488 ASP A 490 HOH A 771 SITE 2 AC1 6 HOH A 774 HOH A 811 CRYST1 37.700 43.211 68.077 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026525 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023142 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014689 0.00000