HEADER EXOCYTOSIS 09-FEB-15 4Y21 TITLE CRYSTAL STRUCTURE OF MUNC13-1 MUN DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN UNC-13 HOMOLOG A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MUN DOMAIN; COMPND 5 SYNONYM: MUNC13-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: UNC13A, UNC13H1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS HELICAL BUNDLES, CATCHR, EXOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR X.Y.YANG,S.WANG,Y.SHENG,M.ZHANG,W.J.ZOU,L.J.WU,L.J.KANG,J.RIZO, AUTHOR 2 R.G.ZHANG,T.XU,C.MA REVDAT 5 08-NOV-23 4Y21 1 REMARK REVDAT 4 23-MAR-22 4Y21 1 REMARK REVDAT 3 18-OCT-17 4Y21 1 SOURCE REMARK REVDAT 2 22-JUL-15 4Y21 1 JRNL REVDAT 1 10-JUN-15 4Y21 0 JRNL AUTH X.YANG,S.WANG,Y.SHENG,M.ZHANG,W.ZOU,L.WU,L.KANG,J.RIZO, JRNL AUTH 2 R.ZHANG,T.XU,C.MA JRNL TITL SYNTAXIN OPENING BY THE MUN DOMAIN UNDERLIES THE FUNCTION OF JRNL TITL 2 MUNC13 IN SYNAPTIC-VESICLE PRIMING. JRNL REF NAT.STRUCT.MOL.BIOL. V. 22 547 2015 JRNL REFN ESSN 1545-9985 JRNL PMID 26030875 JRNL DOI 10.1038/NSMB.3038 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 32104 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1712 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2325 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE SET COUNT : 123 REMARK 3 BIN FREE R VALUE : 0.3970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4347 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.75000 REMARK 3 B22 (A**2) : -0.44000 REMARK 3 B33 (A**2) : -3.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.348 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.274 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.244 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.556 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4436 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4277 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5992 ; 1.335 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9892 ; 0.710 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 537 ; 8.053 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 208 ;34.727 ;25.240 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 833 ;22.411 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;21.702 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 669 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4946 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 977 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2154 ;13.136 ; 7.901 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2153 ;13.137 ; 7.901 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2689 ;17.036 ;11.902 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 548 REMARK 3 ORIGIN FOR THE GROUP (A): 90.3264 57.0271 -9.8236 REMARK 3 T TENSOR REMARK 3 T11: 0.4765 T22: 0.0275 REMARK 3 T33: 0.0230 T12: 0.0524 REMARK 3 T13: -0.0393 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.5257 L22: 0.8966 REMARK 3 L33: 0.4486 L12: -0.6832 REMARK 3 L13: 0.4815 L23: -0.6311 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: -0.0086 S13: 0.0293 REMARK 3 S21: -0.0060 S22: 0.0082 S23: -0.0338 REMARK 3 S31: -0.0124 S32: -0.0174 S33: 0.0157 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Y21 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000206623. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8-6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(111) SILICON CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34107 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3SWH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MG(NO3)2, MES, PH 6.3, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 57.03100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 135.46050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.03100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 135.46050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 468 OG SER A 531 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 142 ND2 ASN A 412 4554 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 116 C - N - CA ANGL. DEV. = -9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 63 -66.03 -97.76 REMARK 500 PRO A 71 87.48 -58.40 REMARK 500 GLU A 113 37.75 -99.46 REMARK 500 PRO A 115 48.53 -96.40 REMARK 500 GLN A 119 -39.28 -30.84 REMARK 500 LEU A 151 64.21 -110.26 REMARK 500 ALA A 415 73.58 8.99 REMARK 500 LYS A 481 -129.04 64.78 REMARK 500 ILE A 547 72.29 53.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 106 ASP A 107 -51.45 REMARK 500 GLU A 113 VAL A 114 -130.26 REMARK 500 GLY A 120 PRO A 121 -59.44 REMARK 500 REMARK 500 REMARK: NULL DBREF 4Y21 A 10 475 UNP Q62768 UN13A_RAT 942 1407 DBREF 4Y21 A 478 548 UNP Q62768 UN13A_RAT 1453 1523 SEQADV 4Y21 GLU A 476 UNP Q62768 LINKER SEQADV 4Y21 PHE A 477 UNP Q62768 LINKER SEQRES 1 A 539 GLY LYS GLU ARG PHE VAL LYS LEU LEU ASP GLN LEU HIS SEQRES 2 A 539 ASN SER LEU ARG ILE ASP LEU SER MET TYR ARG ASN ASN SEQRES 3 A 539 PHE PRO ALA SER SER PRO GLU ARG LEU GLN ASP LEU LYS SEQRES 4 A 539 SER THR VAL ASP LEU LEU THR SER ILE THR PHE PHE ARG SEQRES 5 A 539 MET LYS VAL GLN GLU LEU GLN SER PRO PRO ARG ALA SER SEQRES 6 A 539 GLN VAL VAL LYS ASP CYS VAL LYS ALA CYS LEU ASN SER SEQRES 7 A 539 THR TYR GLU TYR ILE PHE ASN ASN CYS HIS GLU LEU TYR SEQRES 8 A 539 GLY ARG GLU TYR GLN THR ASP PRO ALA LYS LYS GLY GLU SEQRES 9 A 539 VAL PRO PRO GLU GLU GLN GLY PRO SER ILE LYS ASN LEU SEQRES 10 A 539 ASP PHE TRP SER LYS LEU ILE THR LEU ILE VAL SER ILE SEQRES 11 A 539 ILE GLU GLU ASP LYS ASN SER TYR THR PRO CYS LEU ASN SEQRES 12 A 539 GLN PHE PRO GLN GLU LEU ASN VAL GLY LYS ILE SER ALA SEQRES 13 A 539 GLU VAL MET TRP SER LEU PHE ALA GLN ASP MET LYS TYR SEQRES 14 A 539 ALA MET GLU GLU HIS ASP LYS HIS ARG LEU CYS LYS SER SEQRES 15 A 539 ALA ASP TYR MET ASN LEU HIS PHE LYS VAL LYS TRP LEU SEQRES 16 A 539 TYR ASN GLU TYR VAL ALA GLU LEU PRO THR PHE LYS ASP SEQRES 17 A 539 ARG VAL PRO GLU TYR PRO ALA TRP PHE GLU PRO PHE VAL SEQRES 18 A 539 ILE GLN TRP LEU ASP GLU ASN GLU GLU VAL SER ARG ASP SEQRES 19 A 539 PHE LEU HIS GLY ALA LEU GLU ARG ASP LYS LYS ASP GLY SEQRES 20 A 539 PHE GLN GLN THR SER GLU HIS ALA LEU PHE SER CYS SER SEQRES 21 A 539 VAL VAL ASP VAL PHE SER GLN LEU ASN GLN SER PHE GLU SEQRES 22 A 539 ILE ILE LYS LYS LEU GLU CYS PRO ASP PRO GLN ILE VAL SEQRES 23 A 539 GLY HIS TYR MET ARG ARG PHE ALA LYS THR ILE SER ASN SEQRES 24 A 539 VAL LEU LEU GLN TYR ALA ASP ILE VAL SER LYS ASP PHE SEQRES 25 A 539 ALA SER TYR CYS SER LYS GLU LYS GLU LYS VAL PRO CYS SEQRES 26 A 539 ILE LEU MET ASN ASN THR GLN GLN LEU ARG VAL GLN LEU SEQRES 27 A 539 GLU LYS MET PHE GLU ALA MET GLY GLY LYS GLU LEU ASP SEQRES 28 A 539 ALA GLU ALA SER GLY THR LEU LYS GLU LEU GLN VAL LYS SEQRES 29 A 539 LEU ASN ASN VAL LEU ASP GLU LEU SER HIS VAL PHE ALA SEQRES 30 A 539 THR SER PHE GLN PRO HIS ILE GLU GLU CYS VAL ARG GLN SEQRES 31 A 539 MET GLY ASP ILE LEU SER GLN VAL LYS GLY THR GLY ASN SEQRES 32 A 539 VAL PRO ALA SER ALA CYS SER SER VAL ALA GLN ASP ALA SEQRES 33 A 539 ASP ASN VAL LEU GLN PRO ILE MET ASP LEU LEU ASP SER SEQRES 34 A 539 ASN LEU THR LEU PHE ALA LYS ILE CYS GLU LYS THR VAL SEQRES 35 A 539 LEU LYS ARG VAL LEU LYS GLU LEU TRP LYS LEU VAL MET SEQRES 36 A 539 ASN THR MET GLU ARG THR ILE VAL LEU PRO PRO GLU PHE SEQRES 37 A 539 SER LYS LEU LYS ASP HIS MET VAL ARG GLU GLU ALA LYS SEQRES 38 A 539 SER LEU THR PRO LYS GLN CYS ALA VAL VAL GLU LEU ALA SEQRES 39 A 539 LEU ASP THR ILE LYS GLN TYR PHE HIS ALA GLY GLY VAL SEQRES 40 A 539 GLY LEU LYS LYS THR PHE LEU GLU LYS SER PRO ASP LEU SEQRES 41 A 539 GLN SER LEU ARG TYR ALA LEU SER LEU TYR THR GLN ALA SEQRES 42 A 539 THR ASP LEU LEU ILE LYS HELIX 1 AA1 GLY A 10 SER A 30 1 21 HELIX 2 AA2 MET A 31 PHE A 36 1 6 HELIX 3 AA3 SER A 40 VAL A 64 1 25 HELIX 4 AA4 ARG A 72 ASN A 95 1 24 HELIX 5 AA5 ASN A 95 TYR A 104 1 10 HELIX 6 AA6 LEU A 126 SER A 146 1 21 HELIX 7 AA7 SER A 146 LEU A 151 1 6 HELIX 8 AA8 ASN A 159 ARG A 187 1 29 HELIX 9 AA9 LYS A 190 VAL A 209 1 20 HELIX 10 AB1 LEU A 212 ASP A 217 1 6 HELIX 11 AB2 GLU A 221 HIS A 246 1 26 HELIX 12 AB3 ALA A 248 ASP A 255 1 8 HELIX 13 AB4 SER A 267 LEU A 287 1 21 HELIX 14 AB5 ASP A 291 ALA A 322 1 32 HELIX 15 AB6 SER A 323 CYS A 325 5 3 HELIX 16 AB7 SER A 326 LYS A 329 5 4 HELIX 17 AB8 GLU A 330 MET A 354 1 25 HELIX 18 AB9 ASP A 360 SER A 388 1 29 HELIX 19 AC1 PHE A 389 GLN A 406 1 18 HELIX 20 AC2 SER A 420 ALA A 444 1 25 HELIX 21 AC3 LYS A 445 CYS A 447 5 3 HELIX 22 AC4 GLU A 448 ILE A 471 1 24 HELIX 23 AC5 THR A 493 ALA A 513 1 21 HELIX 24 AC6 LYS A 519 SER A 526 1 8 HELIX 25 AC7 SER A 526 THR A 540 1 15 SHEET 1 AA1 2 PHE A 477 LEU A 480 0 SHEET 2 AA1 2 HIS A 483 ARG A 486 -1 O VAL A 485 N SER A 478 CISPEP 1 GLY A 112 GLU A 113 0 -23.98 CISPEP 2 PRO A 116 GLU A 117 0 4.93 CISPEP 3 ARG A 218 VAL A 219 0 -4.64 CRYST1 114.062 270.921 47.735 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008767 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003691 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020949 0.00000