data_4Y27 # _entry.id 4Y27 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4Y27 pdb_00004y27 10.2210/pdb4y27/pdb WWPDB D_1000206733 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-11-18 2 'Structure model' 2 0 2019-05-15 3 'Structure model' 2 1 2024-01-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Atomic model' 3 2 'Structure model' 'Data collection' 4 2 'Structure model' 'Derived calculations' 5 2 'Structure model' 'Polymer sequence' 6 2 'Structure model' 'Structure summary' 7 3 'Structure model' 'Data collection' 8 3 'Structure model' 'Database references' 9 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' atom_site_anisotrop 3 2 'Structure model' chem_comp 4 2 'Structure model' entity 5 2 'Structure model' entity_poly 6 2 'Structure model' ndb_struct_na_base_pair 7 2 'Structure model' ndb_struct_na_base_pair_step 8 2 'Structure model' pdbx_distant_solvent_atoms 9 2 'Structure model' pdbx_nonpoly_scheme 10 2 'Structure model' pdbx_seq_map_depositor_info 11 2 'Structure model' struct_conn 12 3 'Structure model' chem_comp_atom 13 3 'Structure model' chem_comp_bond 14 3 'Structure model' database_2 15 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.B_iso_or_equiv' 2 2 'Structure model' '_atom_site.Cartn_x' 3 2 'Structure model' '_atom_site.Cartn_y' 4 2 'Structure model' '_atom_site.Cartn_z' 5 2 'Structure model' '_atom_site.auth_atom_id' 6 2 'Structure model' '_atom_site.label_atom_id' 7 2 'Structure model' '_atom_site.occupancy' 8 2 'Structure model' '_atom_site.pdbx_auth_seq_id' 9 2 'Structure model' '_atom_site_anisotrop.U[1][1]' 10 2 'Structure model' '_atom_site_anisotrop.U[1][2]' 11 2 'Structure model' '_atom_site_anisotrop.U[1][3]' 12 2 'Structure model' '_atom_site_anisotrop.U[2][2]' 13 2 'Structure model' '_atom_site_anisotrop.U[2][3]' 14 2 'Structure model' '_atom_site_anisotrop.U[3][3]' 15 2 'Structure model' '_atom_site_anisotrop.pdbx_PDB_residue_no' 16 2 'Structure model' '_chem_comp.mon_nstd_flag' 17 2 'Structure model' '_chem_comp.type' 18 2 'Structure model' '_entity.pdbx_description' 19 2 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 20 2 'Structure model' '_pdbx_distant_solvent_atoms.auth_seq_id' 21 2 'Structure model' '_pdbx_nonpoly_scheme.auth_seq_num' 22 2 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code' 23 3 'Structure model' '_database_2.pdbx_DOI' 24 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4Y27 _pdbx_database_status.recvd_initial_deposition_date 2015-02-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'Unmodified SR' _pdbx_database_related.db_id 3DVZ _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ennifar, E.' 1 'Micura, R.' 2 'Fluer, S.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 112 _citation.language ? _citation.page_first E2561 _citation.page_last E2568 _citation.title 'Role of a ribosomal RNA phosphate oxygen during the EF-G-triggered GTP hydrolysis.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.1505231112 _citation.pdbx_database_id_PubMed 25941362 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Koch, M.' 1 ? primary 'Flur, S.' 2 ? primary 'Kreutz, C.' 3 ? primary 'Ennifar, E.' 4 ? primary 'Micura, R.' 5 ? primary 'Polacek, N.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '27-mer 23S Sarcin-Ricil Loop' 8756.308 1 ? ? ? ? 2 water nat water 18.015 143 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'UGCUCCUAGUACGA(OMG)(45A)GGACCGGAGUG' _entity_poly.pdbx_seq_one_letter_code_can UGCUCCUAGUACGAGAGGACCGGAGUG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 G n 1 3 C n 1 4 U n 1 5 C n 1 6 C n 1 7 U n 1 8 A n 1 9 G n 1 10 U n 1 11 A n 1 12 C n 1 13 G n 1 14 A n 1 15 OMG n 1 16 45A n 1 17 G n 1 18 G n 1 19 A n 1 20 C n 1 21 C n 1 22 G n 1 23 G n 1 24 A n 1 25 G n 1 26 U n 1 27 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 27 _pdbx_entity_src_syn.organism_scientific 'Escherichia coli' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 562 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 45A 'RNA linking' n "5'-O-[(S)-hydroxy(methyl)phosphoryl]adenosine" ? 'C11 H16 N5 O6 P' 345.248 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 OMG 'RNA linking' n "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O8 P' 377.247 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 2647 2647 U U A . n A 1 2 G 2 2648 2648 G G A . n A 1 3 C 3 2649 2649 C C A . n A 1 4 U 4 2650 2650 U U A . n A 1 5 C 5 2651 2651 C C A . n A 1 6 C 6 2652 2652 C C A . n A 1 7 U 7 2653 2653 U U A . n A 1 8 A 8 2654 2654 A A A . n A 1 9 G 9 2655 2655 G G A . n A 1 10 U 10 2656 2656 U U A . n A 1 11 A 11 2657 2657 A A A . n A 1 12 C 12 2658 2658 C C A . n A 1 13 G 13 2659 2659 G G A . n A 1 14 A 14 2660 2660 A A A . n A 1 15 OMG 15 2661 2661 OMG OME A . n A 1 16 45A 16 2662 2662 45A MPN A . n A 1 17 G 17 2663 2663 G G A . n A 1 18 G 18 2664 2664 G G A . n A 1 19 A 19 2665 2665 A A A . n A 1 20 C 20 2666 2666 C C A . n A 1 21 C 21 2667 2667 C C A . n A 1 22 G 22 2668 2668 G G A . n A 1 23 G 23 2669 2669 G G A . n A 1 24 A 24 2670 2670 A A A . n A 1 25 G 25 2671 2671 G G A . n A 1 26 U 26 2672 2672 U U A . n A 1 27 G 27 2673 2673 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 2701 72 HOH HOH A . B 2 HOH 2 2702 81 HOH HOH A . B 2 HOH 3 2703 30 HOH HOH A . B 2 HOH 4 2704 74 HOH HOH A . B 2 HOH 5 2705 96 HOH HOH A . B 2 HOH 6 2706 44 HOH HOH A . B 2 HOH 7 2707 25 HOH HOH A . B 2 HOH 8 2708 135 HOH HOH A . B 2 HOH 9 2709 10 HOH HOH A . B 2 HOH 10 2710 71 HOH HOH A . B 2 HOH 11 2711 130 HOH HOH A . B 2 HOH 12 2712 84 HOH HOH A . B 2 HOH 13 2713 134 HOH HOH A . B 2 HOH 14 2714 46 HOH HOH A . B 2 HOH 15 2715 61 HOH HOH A . B 2 HOH 16 2716 103 HOH HOH A . B 2 HOH 17 2717 23 HOH HOH A . B 2 HOH 18 2718 39 HOH HOH A . B 2 HOH 19 2719 107 HOH HOH A . B 2 HOH 20 2720 29 HOH HOH A . B 2 HOH 21 2721 90 HOH HOH A . B 2 HOH 22 2722 140 HOH HOH A . B 2 HOH 23 2723 102 HOH HOH A . B 2 HOH 24 2724 109 HOH HOH A . B 2 HOH 25 2725 85 HOH HOH A . B 2 HOH 26 2726 45 HOH HOH A . B 2 HOH 27 2727 58 HOH HOH A . B 2 HOH 28 2728 123 HOH HOH A . B 2 HOH 29 2729 87 HOH HOH A . B 2 HOH 30 2730 41 HOH HOH A . B 2 HOH 31 2731 56 HOH HOH A . B 2 HOH 32 2732 28 HOH HOH A . B 2 HOH 33 2733 24 HOH HOH A . B 2 HOH 34 2734 21 HOH HOH A . B 2 HOH 35 2735 48 HOH HOH A . B 2 HOH 36 2736 55 HOH HOH A . B 2 HOH 37 2737 80 HOH HOH A . B 2 HOH 38 2738 4 HOH HOH A . B 2 HOH 39 2739 116 HOH HOH A . B 2 HOH 40 2740 6 HOH HOH A . B 2 HOH 41 2741 47 HOH HOH A . B 2 HOH 42 2742 38 HOH HOH A . B 2 HOH 43 2743 3 HOH HOH A . B 2 HOH 44 2744 142 HOH HOH A . B 2 HOH 45 2745 35 HOH HOH A . B 2 HOH 46 2746 17 HOH HOH A . B 2 HOH 47 2747 115 HOH HOH A . B 2 HOH 48 2748 59 HOH HOH A . B 2 HOH 49 2749 67 HOH HOH A . B 2 HOH 50 2750 18 HOH HOH A . B 2 HOH 51 2751 88 HOH HOH A . B 2 HOH 52 2752 66 HOH HOH A . B 2 HOH 53 2753 82 HOH HOH A . B 2 HOH 54 2754 43 HOH HOH A . B 2 HOH 55 2755 101 HOH HOH A . B 2 HOH 56 2756 27 HOH HOH A . B 2 HOH 57 2757 143 HOH HOH A . B 2 HOH 58 2758 34 HOH HOH A . B 2 HOH 59 2759 114 HOH HOH A . B 2 HOH 60 2760 32 HOH HOH A . B 2 HOH 61 2761 63 HOH HOH A . B 2 HOH 62 2762 125 HOH HOH A . B 2 HOH 63 2763 94 HOH HOH A . B 2 HOH 64 2764 93 HOH HOH A . B 2 HOH 65 2765 13 HOH HOH A . B 2 HOH 66 2766 11 HOH HOH A . B 2 HOH 67 2767 77 HOH HOH A . B 2 HOH 68 2768 12 HOH HOH A . B 2 HOH 69 2769 79 HOH HOH A . B 2 HOH 70 2770 20 HOH HOH A . B 2 HOH 71 2771 37 HOH HOH A . B 2 HOH 72 2772 65 HOH HOH A . B 2 HOH 73 2773 22 HOH HOH A . B 2 HOH 74 2774 1 HOH HOH A . B 2 HOH 75 2775 5 HOH HOH A . B 2 HOH 76 2776 15 HOH HOH A . B 2 HOH 77 2777 42 HOH HOH A . B 2 HOH 78 2778 40 HOH HOH A . B 2 HOH 79 2779 92 HOH HOH A . B 2 HOH 80 2780 53 HOH HOH A . B 2 HOH 81 2781 57 HOH HOH A . B 2 HOH 82 2782 2 HOH HOH A . B 2 HOH 83 2783 31 HOH HOH A . B 2 HOH 84 2784 104 HOH HOH A . B 2 HOH 85 2785 64 HOH HOH A . B 2 HOH 86 2786 51 HOH HOH A . B 2 HOH 87 2787 52 HOH HOH A . B 2 HOH 88 2788 112 HOH HOH A . B 2 HOH 89 2789 113 HOH HOH A . B 2 HOH 90 2790 19 HOH HOH A . B 2 HOH 91 2791 126 HOH HOH A . B 2 HOH 92 2792 133 HOH HOH A . B 2 HOH 93 2793 91 HOH HOH A . B 2 HOH 94 2794 124 HOH HOH A . B 2 HOH 95 2795 16 HOH HOH A . B 2 HOH 96 2796 33 HOH HOH A . B 2 HOH 97 2797 49 HOH HOH A . B 2 HOH 98 2798 7 HOH HOH A . B 2 HOH 99 2799 108 HOH HOH A . B 2 HOH 100 2800 36 HOH HOH A . B 2 HOH 101 2801 78 HOH HOH A . B 2 HOH 102 2802 9 HOH HOH A . B 2 HOH 103 2803 89 HOH HOH A . B 2 HOH 104 2804 54 HOH HOH A . B 2 HOH 105 2805 14 HOH HOH A . B 2 HOH 106 2806 62 HOH HOH A . B 2 HOH 107 2807 60 HOH HOH A . B 2 HOH 108 2808 8 HOH HOH A . B 2 HOH 109 2809 26 HOH HOH A . B 2 HOH 110 2810 97 HOH HOH A . B 2 HOH 111 2811 76 HOH HOH A . B 2 HOH 112 2812 75 HOH HOH A . B 2 HOH 113 2813 68 HOH HOH A . B 2 HOH 114 2814 117 HOH HOH A . B 2 HOH 115 2815 127 HOH HOH A . B 2 HOH 116 2816 69 HOH HOH A . B 2 HOH 117 2817 83 HOH HOH A . B 2 HOH 118 2818 99 HOH HOH A . B 2 HOH 119 2819 138 HOH HOH A . B 2 HOH 120 2820 73 HOH HOH A . B 2 HOH 121 2821 122 HOH HOH A . B 2 HOH 122 2822 141 HOH HOH A . B 2 HOH 123 2823 118 HOH HOH A . B 2 HOH 124 2824 106 HOH HOH A . B 2 HOH 125 2825 128 HOH HOH A . B 2 HOH 126 2826 70 HOH HOH A . B 2 HOH 127 2827 98 HOH HOH A . B 2 HOH 128 2828 119 HOH HOH A . B 2 HOH 129 2829 129 HOH HOH A . B 2 HOH 130 2830 121 HOH HOH A . B 2 HOH 131 2831 137 HOH HOH A . B 2 HOH 132 2832 95 HOH HOH A . B 2 HOH 133 2833 111 HOH HOH A . B 2 HOH 134 2834 110 HOH HOH A . B 2 HOH 135 2835 105 HOH HOH A . B 2 HOH 136 2836 131 HOH HOH A . B 2 HOH 137 2837 50 HOH HOH A . B 2 HOH 138 2838 100 HOH HOH A . B 2 HOH 139 2839 120 HOH HOH A . B 2 HOH 140 2840 132 HOH HOH A . B 2 HOH 141 2841 86 HOH HOH A . B 2 HOH 142 2842 139 HOH HOH A . B 2 HOH 143 2843 136 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(phenix.refine: 1.8.4_1496)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # _cell.entry_id 4Y27 _cell.length_a 29.500 _cell.length_b 29.500 _cell.length_c 77.150 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y27 _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4Y27 _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.92 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 35.83 _exptl_crystal.description 'Square platelet' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Crystals were grown for two weeks at 20C by mixing one volume of RNA sample with one volume of a crystallization buffer made with ammonium sulfate 2.5 M, magnesium acetate 10 mM and 2-(N-morpholino)ethanesulfonic acid (MES) pH 5.6 50 mM. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 2M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-12-20 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.77491 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.77491 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4Y27 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.998 _reflns.d_resolution_low 30 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 35632 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.9 _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 35.15 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 0.998 _reflns_shell.d_res_low 1.02 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.01 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all 2556 _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 98.0 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 3.697 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4Y27 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 35630 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.500 _refine.ls_d_res_high 0.998 _refine.ls_percent_reflns_obs 99.85 _refine.ls_R_factor_obs 0.1361 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1353 _refine.ls_R_factor_R_free 0.1488 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.97 _refine.ls_number_reflns_R_free 1770 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 0.70 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.30 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model 3DVZ _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.11 _refine.pdbx_overall_phase_error 16.75 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 580 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 143 _refine_hist.number_atoms_total 723 _refine_hist.d_res_high 0.998 _refine_hist.d_res_low 29.500 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.016 ? ? 647 'X-RAY DIFFRACTION' ? f_angle_d 1.579 ? ? 1003 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 11.910 ? ? 299 'X-RAY DIFFRACTION' ? f_chiral_restr 0.090 ? ? 132 'X-RAY DIFFRACTION' ? f_plane_restr 0.019 ? ? 27 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 0.9983 1.0253 2567 0.3114 98.00 0.3267 . . 129 . . . . 'X-RAY DIFFRACTION' . 1.0253 1.0554 2605 0.2436 100.00 0.2697 . . 135 . . . . 'X-RAY DIFFRACTION' . 1.0554 1.0895 2591 0.2025 100.00 0.2227 . . 138 . . . . 'X-RAY DIFFRACTION' . 1.0895 1.1284 2612 0.1744 100.00 0.2181 . . 129 . . . . 'X-RAY DIFFRACTION' . 1.1284 1.1736 2585 0.1579 100.00 0.1652 . . 139 . . . . 'X-RAY DIFFRACTION' . 1.1736 1.2270 2628 0.1421 100.00 0.1587 . . 141 . . . . 'X-RAY DIFFRACTION' . 1.2270 1.2917 2588 0.1352 100.00 0.1614 . . 139 . . . . 'X-RAY DIFFRACTION' . 1.2917 1.3726 2591 0.1345 100.00 0.1523 . . 133 . . . . 'X-RAY DIFFRACTION' . 1.3726 1.4786 2615 0.1334 100.00 0.1420 . . 137 . . . . 'X-RAY DIFFRACTION' . 1.4786 1.6274 2601 0.1196 100.00 0.1430 . . 137 . . . . 'X-RAY DIFFRACTION' . 1.6274 1.8629 2613 0.1163 100.00 0.1462 . . 136 . . . . 'X-RAY DIFFRACTION' . 1.8629 2.3469 2623 0.1358 100.00 0.1473 . . 136 . . . . 'X-RAY DIFFRACTION' . 2.3469 29.5129 2641 0.1254 100.00 0.1313 . . 141 . . . . # _struct.entry_id 4Y27 _struct.title 'E.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4Y27 _struct_keywords.text 'RNA, modification, ribosome' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4Y27 _struct_ref.pdbx_db_accession 4Y27 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4Y27 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 27 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4Y27 _struct_ref_seq.db_align_beg 2647 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 2673 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2647 _struct_ref_seq.pdbx_auth_seq_align_end 2673 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 550 ? 1 MORE 1 ? 1 'SSA (A^2)' 4810 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A A 14 "O3'" ? ? ? 1_555 A OMG 15 P ? ? A A 2660 A OMG 2661 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale2 covale both ? A OMG 15 "O3'" ? ? ? 1_555 A 45A 16 P ? ? A OMG 2661 A 45A 2662 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale3 covale one ? A 45A 16 "O3'" ? ? ? 1_555 A G 17 P ? ? A 45A 2662 A G 2663 1_555 ? ? ? ? ? ? ? 1.642 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 26 O2 ? ? A G 2648 A U 2672 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog2 hydrog ? ? A G 2 O6 ? ? ? 1_555 A U 26 N3 ? ? A G 2648 A U 2672 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 25 N1 ? ? A C 2649 A G 2671 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 25 O6 ? ? A C 2649 A G 2671 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 25 N2 ? ? A C 2649 A G 2671 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 24 N1 ? ? A U 2650 A A 2670 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 24 N6 ? ? A U 2650 A A 2670 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 23 N1 ? ? A C 2651 A G 2669 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 23 O6 ? ? A C 2651 A G 2669 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 23 N2 ? ? A C 2651 A G 2669 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 22 N1 ? ? A C 2652 A G 2668 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 22 O6 ? ? A C 2652 A G 2668 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 22 N2 ? ? A C 2652 A G 2668 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 7 O2 ? ? ? 1_555 A C 21 N4 ? ? A U 2653 A C 2667 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog15 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 19 N7 ? ? A U 2656 A A 2665 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog16 hydrog ? ? A U 10 O2 ? ? ? 1_555 A A 19 N6 ? ? A U 2656 A A 2665 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog17 hydrog ? ? A A 11 N6 ? ? ? 1_555 A G 18 N3 ? ? A A 2657 A G 2664 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog18 hydrog ? ? A A 11 N7 ? ? ? 1_555 A G 18 N2 ? ? A A 2657 A G 2664 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog19 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 17 N1 ? ? A C 2658 A G 2663 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 17 O6 ? ? A C 2658 A G 2663 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 17 N2 ? ? A C 2658 A G 2663 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 13 N2 ? ? ? 1_555 A 45A 16 N7 ? ? A G 2659 A 45A 2662 1_555 ? ? ? ? ? ? 'G-45A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "HO2'" _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 U _pdbx_validate_symm_contact.auth_seq_id_1 2653 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 HN21 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 OMG _pdbx_validate_symm_contact.auth_seq_id_2 2661 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_565 _pdbx_validate_symm_contact.dist 1.33 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" A 45A 2662 ? ? P A G 2663 ? ? "O5'" A G 2663 ? ? 74.80 104.00 -29.20 1.90 Y 2 1 "O5'" A G 2663 ? ? P A G 2663 ? ? OP2 A G 2663 ? ? 118.46 110.70 7.76 1.20 N # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2843 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.59 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 45A P P N N 1 45A "O4'" O N N 2 45A "C4'" C N R 3 45A "C3'" C N S 4 45A "C2'" C N R 5 45A "O3'" O N N 6 45A C6 C Y N 7 45A "C1'" C N R 8 45A C4 C Y N 9 45A N3 N Y N 10 45A C2 C Y N 11 45A N1 N Y N 12 45A C31 C N N 13 45A OP2 O N N 14 45A "O5'" O N N 15 45A "C5'" C N N 16 45A "O2'" O N N 17 45A N9 N Y N 18 45A C5 C Y N 19 45A N7 N Y N 20 45A C8 C Y N 21 45A N6 N N N 22 45A O1 O N N 23 45A "H4'" H N N 24 45A "H3'" H N N 25 45A "H2'" H N N 26 45A H1 H N N 27 45A "H1'" H N N 28 45A H2 H N N 29 45A H32 H N N 30 45A H33 H N N 31 45A H31 H N N 32 45A "H5'1" H N N 33 45A "H5'2" H N N 34 45A "HO2'" H N N 35 45A H8 H N N 36 45A H61 H N N 37 45A H62 H N N 38 45A H3 H N N 39 A OP3 O N N 40 A P P N N 41 A OP1 O N N 42 A OP2 O N N 43 A "O5'" O N N 44 A "C5'" C N N 45 A "C4'" C N R 46 A "O4'" O N N 47 A "C3'" C N S 48 A "O3'" O N N 49 A "C2'" C N R 50 A "O2'" O N N 51 A "C1'" C N R 52 A N9 N Y N 53 A C8 C Y N 54 A N7 N Y N 55 A C5 C Y N 56 A C6 C Y N 57 A N6 N N N 58 A N1 N Y N 59 A C2 C Y N 60 A N3 N Y N 61 A C4 C Y N 62 A HOP3 H N N 63 A HOP2 H N N 64 A "H5'" H N N 65 A "H5''" H N N 66 A "H4'" H N N 67 A "H3'" H N N 68 A "HO3'" H N N 69 A "H2'" H N N 70 A "HO2'" H N N 71 A "H1'" H N N 72 A H8 H N N 73 A H61 H N N 74 A H62 H N N 75 A H2 H N N 76 C OP3 O N N 77 C P P N N 78 C OP1 O N N 79 C OP2 O N N 80 C "O5'" O N N 81 C "C5'" C N N 82 C "C4'" C N R 83 C "O4'" O N N 84 C "C3'" C N S 85 C "O3'" O N N 86 C "C2'" C N R 87 C "O2'" O N N 88 C "C1'" C N R 89 C N1 N N N 90 C C2 C N N 91 C O2 O N N 92 C N3 N N N 93 C C4 C N N 94 C N4 N N N 95 C C5 C N N 96 C C6 C N N 97 C HOP3 H N N 98 C HOP2 H N N 99 C "H5'" H N N 100 C "H5''" H N N 101 C "H4'" H N N 102 C "H3'" H N N 103 C "HO3'" H N N 104 C "H2'" H N N 105 C "HO2'" H N N 106 C "H1'" H N N 107 C H41 H N N 108 C H42 H N N 109 C H5 H N N 110 C H6 H N N 111 G OP3 O N N 112 G P P N N 113 G OP1 O N N 114 G OP2 O N N 115 G "O5'" O N N 116 G "C5'" C N N 117 G "C4'" C N R 118 G "O4'" O N N 119 G "C3'" C N S 120 G "O3'" O N N 121 G "C2'" C N R 122 G "O2'" O N N 123 G "C1'" C N R 124 G N9 N Y N 125 G C8 C Y N 126 G N7 N Y N 127 G C5 C Y N 128 G C6 C N N 129 G O6 O N N 130 G N1 N N N 131 G C2 C N N 132 G N2 N N N 133 G N3 N N N 134 G C4 C Y N 135 G HOP3 H N N 136 G HOP2 H N N 137 G "H5'" H N N 138 G "H5''" H N N 139 G "H4'" H N N 140 G "H3'" H N N 141 G "HO3'" H N N 142 G "H2'" H N N 143 G "HO2'" H N N 144 G "H1'" H N N 145 G H8 H N N 146 G H1 H N N 147 G H21 H N N 148 G H22 H N N 149 HOH O O N N 150 HOH H1 H N N 151 HOH H2 H N N 152 OMG P P N N 153 OMG OP1 O N N 154 OMG OP2 O N N 155 OMG OP3 O N N 156 OMG "O5'" O N N 157 OMG "C5'" C N N 158 OMG "C4'" C N R 159 OMG "O4'" O N N 160 OMG "C3'" C N R 161 OMG "O3'" O N N 162 OMG "C2'" C N R 163 OMG "O2'" O N N 164 OMG CM2 C N N 165 OMG "C1'" C N R 166 OMG N9 N Y N 167 OMG C8 C Y N 168 OMG N7 N Y N 169 OMG C5 C Y N 170 OMG C6 C N N 171 OMG O6 O N N 172 OMG N1 N N N 173 OMG C2 C N N 174 OMG N2 N N N 175 OMG N3 N N N 176 OMG C4 C Y N 177 OMG HOP2 H N N 178 OMG HOP3 H N N 179 OMG "H5'" H N N 180 OMG "H5''" H N N 181 OMG "H4'" H N N 182 OMG "H3'" H N N 183 OMG "HO3'" H N N 184 OMG "H2'" H N N 185 OMG HM21 H N N 186 OMG HM22 H N N 187 OMG HM23 H N N 188 OMG "H1'" H N N 189 OMG H8 H N N 190 OMG HN1 H N N 191 OMG HN21 H N N 192 OMG HN22 H N N 193 U OP3 O N N 194 U P P N N 195 U OP1 O N N 196 U OP2 O N N 197 U "O5'" O N N 198 U "C5'" C N N 199 U "C4'" C N R 200 U "O4'" O N N 201 U "C3'" C N S 202 U "O3'" O N N 203 U "C2'" C N R 204 U "O2'" O N N 205 U "C1'" C N R 206 U N1 N N N 207 U C2 C N N 208 U O2 O N N 209 U N3 N N N 210 U C4 C N N 211 U O4 O N N 212 U C5 C N N 213 U C6 C N N 214 U HOP3 H N N 215 U HOP2 H N N 216 U "H5'" H N N 217 U "H5''" H N N 218 U "H4'" H N N 219 U "H3'" H N N 220 U "HO3'" H N N 221 U "H2'" H N N 222 U "HO2'" H N N 223 U "H1'" H N N 224 U H3 H N N 225 U H5 H N N 226 U H6 H N N 227 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 45A C31 P sing N N 1 45A "O3'" "C3'" sing N N 2 45A "C5'" "C4'" sing N N 3 45A "C5'" "O5'" sing N N 4 45A "C3'" "C4'" sing N N 5 45A "C3'" "C2'" sing N N 6 45A "C4'" "O4'" sing N N 7 45A P "O5'" sing N N 8 45A P OP2 doub N N 9 45A "O2'" "C2'" sing N N 10 45A "C2'" "C1'" sing N N 11 45A "O4'" "C1'" sing N N 12 45A "C1'" N9 sing N N 13 45A C8 N9 sing Y N 14 45A C8 N7 doub Y N 15 45A N9 C4 sing Y N 16 45A N7 C5 sing Y N 17 45A C4 N3 doub Y N 18 45A C4 C5 sing Y N 19 45A N3 C2 sing Y N 20 45A C5 C6 doub Y N 21 45A C2 N1 doub Y N 22 45A C6 N1 sing Y N 23 45A C6 N6 sing N N 24 45A P O1 sing N N 25 45A "C4'" "H4'" sing N N 26 45A "C3'" "H3'" sing N N 27 45A "C2'" "H2'" sing N N 28 45A "O3'" H1 sing N N 29 45A "C1'" "H1'" sing N N 30 45A C2 H2 sing N N 31 45A C31 H32 sing N N 32 45A C31 H33 sing N N 33 45A C31 H31 sing N N 34 45A "C5'" "H5'1" sing N N 35 45A "C5'" "H5'2" sing N N 36 45A "O2'" "HO2'" sing N N 37 45A C8 H8 sing N N 38 45A N6 H61 sing N N 39 45A N6 H62 sing N N 40 45A O1 H3 sing N N 41 A OP3 P sing N N 42 A OP3 HOP3 sing N N 43 A P OP1 doub N N 44 A P OP2 sing N N 45 A P "O5'" sing N N 46 A OP2 HOP2 sing N N 47 A "O5'" "C5'" sing N N 48 A "C5'" "C4'" sing N N 49 A "C5'" "H5'" sing N N 50 A "C5'" "H5''" sing N N 51 A "C4'" "O4'" sing N N 52 A "C4'" "C3'" sing N N 53 A "C4'" "H4'" sing N N 54 A "O4'" "C1'" sing N N 55 A "C3'" "O3'" sing N N 56 A "C3'" "C2'" sing N N 57 A "C3'" "H3'" sing N N 58 A "O3'" "HO3'" sing N N 59 A "C2'" "O2'" sing N N 60 A "C2'" "C1'" sing N N 61 A "C2'" "H2'" sing N N 62 A "O2'" "HO2'" sing N N 63 A "C1'" N9 sing N N 64 A "C1'" "H1'" sing N N 65 A N9 C8 sing Y N 66 A N9 C4 sing Y N 67 A C8 N7 doub Y N 68 A C8 H8 sing N N 69 A N7 C5 sing Y N 70 A C5 C6 sing Y N 71 A C5 C4 doub Y N 72 A C6 N6 sing N N 73 A C6 N1 doub Y N 74 A N6 H61 sing N N 75 A N6 H62 sing N N 76 A N1 C2 sing Y N 77 A C2 N3 doub Y N 78 A C2 H2 sing N N 79 A N3 C4 sing Y N 80 C OP3 P sing N N 81 C OP3 HOP3 sing N N 82 C P OP1 doub N N 83 C P OP2 sing N N 84 C P "O5'" sing N N 85 C OP2 HOP2 sing N N 86 C "O5'" "C5'" sing N N 87 C "C5'" "C4'" sing N N 88 C "C5'" "H5'" sing N N 89 C "C5'" "H5''" sing N N 90 C "C4'" "O4'" sing N N 91 C "C4'" "C3'" sing N N 92 C "C4'" "H4'" sing N N 93 C "O4'" "C1'" sing N N 94 C "C3'" "O3'" sing N N 95 C "C3'" "C2'" sing N N 96 C "C3'" "H3'" sing N N 97 C "O3'" "HO3'" sing N N 98 C "C2'" "O2'" sing N N 99 C "C2'" "C1'" sing N N 100 C "C2'" "H2'" sing N N 101 C "O2'" "HO2'" sing N N 102 C "C1'" N1 sing N N 103 C "C1'" "H1'" sing N N 104 C N1 C2 sing N N 105 C N1 C6 sing N N 106 C C2 O2 doub N N 107 C C2 N3 sing N N 108 C N3 C4 doub N N 109 C C4 N4 sing N N 110 C C4 C5 sing N N 111 C N4 H41 sing N N 112 C N4 H42 sing N N 113 C C5 C6 doub N N 114 C C5 H5 sing N N 115 C C6 H6 sing N N 116 G OP3 P sing N N 117 G OP3 HOP3 sing N N 118 G P OP1 doub N N 119 G P OP2 sing N N 120 G P "O5'" sing N N 121 G OP2 HOP2 sing N N 122 G "O5'" "C5'" sing N N 123 G "C5'" "C4'" sing N N 124 G "C5'" "H5'" sing N N 125 G "C5'" "H5''" sing N N 126 G "C4'" "O4'" sing N N 127 G "C4'" "C3'" sing N N 128 G "C4'" "H4'" sing N N 129 G "O4'" "C1'" sing N N 130 G "C3'" "O3'" sing N N 131 G "C3'" "C2'" sing N N 132 G "C3'" "H3'" sing N N 133 G "O3'" "HO3'" sing N N 134 G "C2'" "O2'" sing N N 135 G "C2'" "C1'" sing N N 136 G "C2'" "H2'" sing N N 137 G "O2'" "HO2'" sing N N 138 G "C1'" N9 sing N N 139 G "C1'" "H1'" sing N N 140 G N9 C8 sing Y N 141 G N9 C4 sing Y N 142 G C8 N7 doub Y N 143 G C8 H8 sing N N 144 G N7 C5 sing Y N 145 G C5 C6 sing N N 146 G C5 C4 doub Y N 147 G C6 O6 doub N N 148 G C6 N1 sing N N 149 G N1 C2 sing N N 150 G N1 H1 sing N N 151 G C2 N2 sing N N 152 G C2 N3 doub N N 153 G N2 H21 sing N N 154 G N2 H22 sing N N 155 G N3 C4 sing N N 156 HOH O H1 sing N N 157 HOH O H2 sing N N 158 OMG P OP1 doub N N 159 OMG P OP2 sing N N 160 OMG P OP3 sing N N 161 OMG P "O5'" sing N N 162 OMG OP2 HOP2 sing N N 163 OMG OP3 HOP3 sing N N 164 OMG "O5'" "C5'" sing N N 165 OMG "C5'" "C4'" sing N N 166 OMG "C5'" "H5'" sing N N 167 OMG "C5'" "H5''" sing N N 168 OMG "C4'" "O4'" sing N N 169 OMG "C4'" "C3'" sing N N 170 OMG "C4'" "H4'" sing N N 171 OMG "O4'" "C1'" sing N N 172 OMG "C3'" "O3'" sing N N 173 OMG "C3'" "C2'" sing N N 174 OMG "C3'" "H3'" sing N N 175 OMG "O3'" "HO3'" sing N N 176 OMG "C2'" "O2'" sing N N 177 OMG "C2'" "C1'" sing N N 178 OMG "C2'" "H2'" sing N N 179 OMG "O2'" CM2 sing N N 180 OMG CM2 HM21 sing N N 181 OMG CM2 HM22 sing N N 182 OMG CM2 HM23 sing N N 183 OMG "C1'" N9 sing N N 184 OMG "C1'" "H1'" sing N N 185 OMG N9 C8 sing Y N 186 OMG N9 C4 sing Y N 187 OMG C8 N7 doub Y N 188 OMG C8 H8 sing N N 189 OMG N7 C5 sing Y N 190 OMG C5 C6 sing N N 191 OMG C5 C4 doub Y N 192 OMG C6 O6 doub N N 193 OMG C6 N1 sing N N 194 OMG N1 C2 sing N N 195 OMG N1 HN1 sing N N 196 OMG C2 N2 sing N N 197 OMG C2 N3 doub N N 198 OMG N2 HN21 sing N N 199 OMG N2 HN22 sing N N 200 OMG N3 C4 sing N N 201 U OP3 P sing N N 202 U OP3 HOP3 sing N N 203 U P OP1 doub N N 204 U P OP2 sing N N 205 U P "O5'" sing N N 206 U OP2 HOP2 sing N N 207 U "O5'" "C5'" sing N N 208 U "C5'" "C4'" sing N N 209 U "C5'" "H5'" sing N N 210 U "C5'" "H5''" sing N N 211 U "C4'" "O4'" sing N N 212 U "C4'" "C3'" sing N N 213 U "C4'" "H4'" sing N N 214 U "O4'" "C1'" sing N N 215 U "C3'" "O3'" sing N N 216 U "C3'" "C2'" sing N N 217 U "C3'" "H3'" sing N N 218 U "O3'" "HO3'" sing N N 219 U "C2'" "O2'" sing N N 220 U "C2'" "C1'" sing N N 221 U "C2'" "H2'" sing N N 222 U "O2'" "HO2'" sing N N 223 U "C1'" N1 sing N N 224 U "C1'" "H1'" sing N N 225 U N1 C2 sing N N 226 U N1 C6 sing N N 227 U C2 O2 doub N N 228 U C2 N3 sing N N 229 U N3 C4 sing N N 230 U N3 H3 sing N N 231 U C4 O4 doub N N 232 U C4 C5 sing N N 233 U C5 C6 doub N N 234 U C5 H5 sing N N 235 U C6 H6 sing N N 236 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4Y27 'double helix' 4Y27 'a-form double helix' 4Y27 'hairpin loop' 4Y27 'mismatched base pair' 4Y27 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A U 26 1_555 -2.371 -0.584 0.115 2.324 -9.913 0.707 1 A_G2648:U2672_A A 2648 ? A 2672 ? 28 1 1 A C 3 1_555 A G 25 1_555 0.216 -0.208 0.097 6.904 -15.320 -1.771 2 A_C2649:G2671_A A 2649 ? A 2671 ? 19 1 1 A U 4 1_555 A A 24 1_555 -0.077 -0.085 0.014 5.966 -11.450 -2.140 3 A_U2650:A2670_A A 2650 ? A 2670 ? 20 1 1 A C 5 1_555 A G 23 1_555 0.243 -0.109 0.046 5.193 -17.367 1.752 4 A_C2651:G2669_A A 2651 ? A 2669 ? 19 1 1 A C 6 1_555 A G 22 1_555 0.235 -0.149 0.012 -3.655 -10.069 -2.363 5 A_C2652:G2668_A A 2652 ? A 2668 ? 19 1 1 A U 7 1_555 A C 21 1_555 5.898 -2.205 -0.334 -2.263 -11.960 -14.886 6 A_U2653:C2667_A A 2653 ? A 2667 ? ? ? 1 A U 10 1_555 A A 19 1_555 4.117 -1.810 -0.831 7.407 -20.175 -103.013 7 A_U2656:A2665_A A 2656 ? A 2665 ? 24 4 1 A A 11 1_555 A G 18 1_555 -6.828 -4.284 -0.161 -1.199 5.462 -3.131 8 A_A2657:G2664_A A 2657 ? A 2664 ? 11 9 1 A C 12 1_555 A G 17 1_555 0.153 -0.109 -0.161 6.420 1.340 0.306 9 A_C2658:G2663_A A 2658 ? A 2663 ? 19 1 1 A G 13 1_555 A 45A 16 1_555 7.254 -5.233 0.606 17.529 -3.871 -18.464 10 A_G2659:45A2662_A A 2659 ? A 2662 ? ? 10 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A U 26 1_555 A C 3 1_555 A G 25 1_555 -0.089 -1.199 3.121 -0.996 4.077 40.918 -2.121 0.026 2.995 5.814 1.420 41.124 1 AA_G2648C2649:G2671U2672_AA A 2648 ? A 2672 ? A 2649 ? A 2671 ? 1 A C 3 1_555 A G 25 1_555 A U 4 1_555 A A 24 1_555 -0.531 -1.733 3.169 -2.921 7.075 29.701 -4.557 0.477 2.732 13.521 5.582 30.650 2 AA_C2649U2650:A2670G2671_AA A 2649 ? A 2671 ? A 2650 ? A 2670 ? 1 A U 4 1_555 A A 24 1_555 A C 5 1_555 A G 23 1_555 0.767 -1.348 3.155 0.218 4.793 35.251 -2.863 -1.226 2.956 7.870 -0.358 35.566 3 AA_U2650C2651:G2669A2670_AA A 2650 ? A 2670 ? A 2651 ? A 2669 ? 1 A C 5 1_555 A G 23 1_555 A C 6 1_555 A G 22 1_555 -0.733 -1.992 3.349 -0.072 8.733 31.968 -4.888 1.275 2.727 15.498 0.127 33.109 4 AA_C2651C2652:G2668G2669_AA A 2651 ? A 2669 ? A 2652 ? A 2668 ? 1 A C 6 1_555 A G 22 1_555 A U 7 1_555 A C 21 1_555 -0.560 -0.963 3.456 7.390 8.805 54.032 -1.574 1.053 3.179 9.570 -8.032 55.151 5 AA_C2652U2653:C2667G2668_AA A 2652 ? A 2668 ? A 2653 ? A 2667 ? 1 A U 7 1_555 A C 21 1_555 A U 10 1_555 A A 19 1_555 0.634 -0.956 6.306 5.974 -2.874 32.019 -0.724 0.900 6.376 -5.141 -10.687 32.681 6 AA_U2653U2656:A2665C2667_AA A 2653 ? A 2667 ? A 2656 ? A 2665 ? 1 A U 10 1_555 A A 19 1_555 A A 11 1_555 A G 18 1_555 5.093 -1.375 3.578 -2.247 -0.857 -11.067 8.511 21.765 4.401 4.378 -11.475 -11.325 7 AA_U2656A2657:G2664A2665_AA A 2656 ? A 2665 ? A 2657 ? A 2664 ? 1 A A 11 1_555 A G 18 1_555 A C 12 1_555 A G 17 1_555 -0.132 -1.260 3.227 -2.718 3.048 58.493 -1.441 -0.003 3.166 3.115 2.778 58.623 8 AA_A2657C2658:G2663G2664_AA A 2657 ? A 2664 ? A 2658 ? A 2663 ? 1 A C 12 1_555 A G 17 1_555 A G 13 1_555 A 45A 16 1_555 -2.383 -1.202 3.030 -5.991 5.567 52.953 -1.666 2.288 3.131 6.202 6.673 53.535 9 AA_C2658G2659:45A2662G2663_AA A 2658 ? A 2663 ? A 2659 ? A 2662 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Swiss National Science Foundation' Switzerland 31003A_143388/1 1 'Austrian Science Foundation' Austria P21641 2 'Austrian Science Foundation' Austria I1040 3 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3DVZ _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 4Y27 _atom_sites.fract_transf_matrix[1][1] 0.033898 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.033898 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012962 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_