HEADER TRANSFERASE 10-FEB-15 4Y34 TITLE CRYSTAL STRUCTURE OF COXSACKIEVIRUS B3 3D POLYMERASE IN COMPLEX WITH TITLE 2 GPC-N143 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3D POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COXSACKIEVIRUS B3; SOURCE 3 ORGANISM_TAXID: 12072; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS POLYMERASE, PICORNAVIRUS, COXSACKIEVIRUS, GPC-N143, INHIBITOR, KEYWDS 2 TRANSFERASE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.VIVES-ADRIAN,C.FERRER-ORTA,N.CERDAGUER REVDAT 3 10-JAN-24 4Y34 1 REMARK REVDAT 2 08-APR-15 4Y34 1 JRNL REVDAT 1 01-APR-15 4Y34 0 JRNL AUTH L.VAN DER LINDEN,L.VIVES-ADRIAN,B.SELISKO,C.FERRER-ORTA, JRNL AUTH 2 X.LIU,K.LANKE,R.ULFERTS,A.M.DE PALMA,F.TANCHIS,N.GORIS, JRNL AUTH 3 D.LEFEBVRE,K.DE CLERCQ,P.LEYSSEN,C.LACROIX,G.PURSTINGER, JRNL AUTH 4 B.COUTARD,B.CANARD,D.D.BOEHR,J.J.ARNOLD,C.E.CAMERON, JRNL AUTH 5 N.VERDAGUER,J.NEYTS,F.J.VAN KUPPEVELD JRNL TITL THE RNA TEMPLATE CHANNEL OF THE RNA-DEPENDENT RNA POLYMERASE JRNL TITL 2 AS A TARGET FOR DEVELOPMENT OF ANTIVIRAL THERAPY OF MULTIPLE JRNL TITL 3 GENERA WITHIN A VIRUS FAMILY. JRNL REF PLOS PATHOG. V. 11 04733 2015 JRNL REFN ESSN 1553-7374 JRNL PMID 25799064 JRNL DOI 10.1371/JOURNAL.PPAT.1004733 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 21638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1168 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1539 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3739 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.24000 REMARK 3 B22 (A**2) : 0.24000 REMARK 3 B33 (A**2) : -0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.455 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.283 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.205 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.984 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3942 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5341 ; 1.793 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 474 ; 6.415 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;37.833 ;23.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 671 ;19.026 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.870 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 567 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2966 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2337 ; 0.900 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3785 ; 1.753 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1605 ; 2.517 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1552 ; 4.204 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Y34 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206774. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21638 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 72.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.47100 REMARK 200 R SYM FOR SHELL (I) : 0.40000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 3DDK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM TRIS PH 7.5, 24.5% (W/V) REMARK 280 GLYCEROL, 1,29M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 144.21500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.31000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.31000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 216.32250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.31000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.31000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.10750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.31000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.31000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 216.32250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.31000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.31000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 72.10750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 144.21500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 220 O HIS A 467 0.53 REMARK 500 CE LYS A 220 O HIS A 467 1.38 REMARK 500 NZ LYS A 220 C HIS A 467 1.63 REMARK 500 NH2 ARG A 416 O4 SO4 A 503 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 111 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP A 111 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 HIS A 466 N - CA - CB ANGL. DEV. = -18.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 104 163.78 179.99 REMARK 500 ARG A 277 -121.75 51.52 REMARK 500 TYR A 314 76.27 -113.80 REMARK 500 LYS A 360 40.12 34.45 REMARK 500 PHE A 364 72.56 -69.80 REMARK 500 LYS A 376 15.75 59.73 REMARK 500 ASP A 407 100.63 -161.31 REMARK 500 PHE A 462 35.00 -87.43 REMARK 500 HIS A 465 -152.69 86.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 45Z A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 510 DBREF 4Y34 A 1 462 UNP Q5UEA2 Q5UEA2_9ENTO 1724 2185 SEQADV 4Y34 ILE A 252 UNP Q5UEA2 LEU 1975 CONFLICT SEQADV 4Y34 HIS A 463 UNP Q5UEA2 EXPRESSION TAG SEQADV 4Y34 HIS A 464 UNP Q5UEA2 EXPRESSION TAG SEQADV 4Y34 HIS A 465 UNP Q5UEA2 EXPRESSION TAG SEQADV 4Y34 HIS A 466 UNP Q5UEA2 EXPRESSION TAG SEQADV 4Y34 HIS A 467 UNP Q5UEA2 EXPRESSION TAG SEQRES 1 A 467 GLY GLU ILE GLU PHE ILE GLU SER SER LYS ASP ALA GLY SEQRES 2 A 467 PHE PRO VAL ILE ASN THR PRO SER LYS THR LYS LEU GLU SEQRES 3 A 467 PRO SER VAL PHE HIS GLN VAL PHE GLU GLY ASN LYS GLU SEQRES 4 A 467 PRO ALA VAL LEU ARG SER GLY ASP PRO ARG LEU LYS ALA SEQRES 5 A 467 ASN PHE GLU GLU ALA ILE PHE SER LYS TYR ILE GLY ASN SEQRES 6 A 467 VAL ASN THR HIS VAL ASP GLU TYR MET LEU GLU ALA VAL SEQRES 7 A 467 ASP HIS TYR ALA GLY GLN LEU ALA THR LEU ASP ILE SER SEQRES 8 A 467 THR GLU PRO MET LYS LEU GLU ASP ALA VAL TYR GLY THR SEQRES 9 A 467 GLU GLY LEU GLU ALA LEU ASP LEU THR THR SER ALA GLY SEQRES 10 A 467 TYR PRO TYR VAL ALA LEU GLY ILE LYS LYS ARG ASP ILE SEQRES 11 A 467 LEU SER LYS LYS THR LYS ASP LEU THR LYS LEU LYS GLU SEQRES 12 A 467 CYS MET ASP LYS TYR GLY LEU ASN LEU PRO MET VAL THR SEQRES 13 A 467 TYR VAL LYS ASP GLU LEU ARG SER ILE GLU LYS VAL ALA SEQRES 14 A 467 LYS GLY LYS SER ARG LEU ILE GLU ALA SER SER LEU ASN SEQRES 15 A 467 ASP SER VAL ALA MET ARG GLN THR PHE GLY ASN LEU TYR SEQRES 16 A 467 LYS THR PHE HIS LEU ASN PRO GLY VAL VAL THR GLY SER SEQRES 17 A 467 ALA VAL GLY CYS ASP PRO ASP LEU PHE TRP SER LYS ILE SEQRES 18 A 467 PRO VAL MET LEU ASP GLY HIS LEU ILE ALA PHE ASP TYR SEQRES 19 A 467 SER GLY TYR ASP ALA SER LEU SER PRO VAL TRP PHE ALA SEQRES 20 A 467 CYS LEU LYS MET ILE LEU GLU LYS LEU GLY TYR THR HIS SEQRES 21 A 467 LYS GLU THR ASN TYR ILE ASP TYR LEU CYS ASN SER HIS SEQRES 22 A 467 HIS LEU TYR ARG ASP LYS HIS TYR PHE VAL ARG GLY GLY SEQRES 23 A 467 MET PRO SER GLY CYS SER GLY THR SER ILE PHE ASN SER SEQRES 24 A 467 MET ILE ASN ASN ILE ILE ILE ARG THR LEU MET LEU LYS SEQRES 25 A 467 VAL TYR LYS GLY ILE ASP LEU ASP GLN PHE ARG MET ILE SEQRES 26 A 467 ALA TYR GLY ASP ASP VAL ILE ALA SER TYR PRO TRP PRO SEQRES 27 A 467 ILE ASP ALA SER LEU LEU ALA GLU ALA GLY LYS GLY TYR SEQRES 28 A 467 GLY LEU ILE MET THR PRO ALA ASP LYS GLY GLU CYS PHE SEQRES 29 A 467 ASN GLU VAL THR TRP THR ASN VAL THR PHE LEU LYS ARG SEQRES 30 A 467 TYR PHE ARG ALA ASP GLU GLN TYR PRO PHE LEU VAL HIS SEQRES 31 A 467 PRO VAL MET PRO MET LYS ASP ILE HIS GLU SER ILE ARG SEQRES 32 A 467 TRP THR LYS ASP PRO LYS ASN THR GLN ASP HIS VAL ARG SEQRES 33 A 467 SER LEU CYS LEU LEU ALA TRP HIS ASN GLY GLU HIS GLU SEQRES 34 A 467 TYR GLU GLU PHE ILE ARG LYS ILE ARG SER VAL PRO VAL SEQRES 35 A 467 GLY ARG CYS LEU THR LEU PRO ALA PHE SER THR LEU ARG SEQRES 36 A 467 ARG LYS TRP LEU ASP SER PHE HIS HIS HIS HIS HIS HET 45Z A 501 31 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET GOL A 505 6 HET SO4 A 506 5 HET GOL A 507 6 HET GOL A 508 6 HET GOL A 509 6 HET SO4 A 510 5 HETNAM 45Z 2,2'-[(4-FLUOROBENZENE-1,2-DIYL)BIS(OXY)]BIS(5- HETNAM 2 45Z NITROBENZONITRILE) HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 45Z C20 H9 F N4 O6 FORMUL 3 SO4 5(O4 S 2-) FORMUL 6 GOL 4(C3 H8 O3) FORMUL 12 HOH *56(H2 O) HELIX 1 AA1 LYS A 10 GLY A 13 5 4 HELIX 2 AA2 ASN A 53 LYS A 61 1 9 HELIX 3 AA3 ASP A 71 THR A 87 1 17 HELIX 4 AA4 LYS A 96 GLY A 103 1 8 HELIX 5 AA5 LYS A 126 ILE A 130 5 5 HELIX 6 AA6 LEU A 138 GLY A 149 1 12 HELIX 7 AA7 SER A 164 LYS A 170 1 7 HELIX 8 AA8 SER A 180 ASN A 201 1 22 HELIX 9 AA9 ASP A 213 TRP A 218 1 6 HELIX 10 AB1 LYS A 220 LEU A 225 1 6 HELIX 11 AB2 GLY A 236 LEU A 241 1 6 HELIX 12 AB3 SER A 242 LEU A 256 1 15 HELIX 13 AB4 THR A 259 CYS A 270 1 12 HELIX 14 AB5 GLY A 293 TYR A 314 1 22 HELIX 15 AB6 ASP A 318 PHE A 322 5 5 HELIX 16 AB7 ASP A 340 GLY A 350 1 11 HELIX 17 AB8 PRO A 394 ARG A 403 1 10 HELIX 18 AB9 ASP A 407 LYS A 409 5 3 HELIX 19 AC1 ASN A 410 TRP A 423 1 14 HELIX 20 AC2 GLY A 426 ARG A 438 1 13 HELIX 21 AC3 VAL A 440 CYS A 445 1 6 HELIX 22 AC4 ALA A 450 PHE A 462 1 13 SHEET 1 AA1 5 GLU A 2 SER A 8 0 SHEET 2 AA1 5 LYS A 279 ARG A 284 -1 O ARG A 284 N GLU A 2 SHEET 3 AA1 5 ASN A 271 LEU A 275 -1 N HIS A 274 O TYR A 281 SHEET 4 AA1 5 MET A 154 VAL A 158 1 N MET A 154 O LEU A 275 SHEET 5 AA1 5 LEU A 175 ALA A 178 -1 O ALA A 178 N VAL A 155 SHEET 1 AA2 2 GLU A 26 PRO A 27 0 SHEET 2 AA2 2 TRP A 404 THR A 405 -1 O THR A 405 N GLU A 26 SHEET 1 AA3 2 GLU A 39 PRO A 40 0 SHEET 2 AA3 2 LEU A 162 ARG A 163 -1 O ARG A 163 N GLU A 39 SHEET 1 AA4 4 ARG A 323 TYR A 327 0 SHEET 2 AA4 4 ASP A 330 TYR A 335 -1 O SER A 334 N ARG A 323 SHEET 3 AA4 4 HIS A 228 TYR A 234 -1 N HIS A 228 O TYR A 335 SHEET 4 AA4 4 MET A 355 THR A 356 -1 O THR A 356 N ASP A 233 SHEET 1 AA5 2 TYR A 378 ALA A 381 0 SHEET 2 AA5 2 VAL A 389 VAL A 392 -1 O HIS A 390 N ARG A 380 CISPEP 1 TYR A 118 PRO A 119 0 2.03 SITE 1 AC1 13 LEU A 110 ASP A 111 THR A 114 ARG A 188 SITE 2 AC1 13 TYR A 195 HIS A 199 GLY A 290 CYS A 291 SITE 3 AC1 13 SER A 292 GLY A 293 THR A 294 SER A 295 SITE 4 AC1 13 TYR A 327 SITE 1 AC2 2 ARG A 174 GLY A 236 SITE 1 AC3 3 ARG A 416 PRO A 449 HOH A 624 SITE 1 AC4 4 GLN A 384 TYR A 385 LYS A 409 ARG A 455 SITE 1 AC5 4 LYS A 38 ARG A 163 SER A 164 HOH A 651 SITE 1 AC6 4 LYS A 38 LYS A 376 ASP A 397 GOL A 508 SITE 1 AC7 4 THR A 405 LYS A 406 ASP A 407 HIS A 414 SITE 1 AC8 2 SER A 401 SO4 A 506 SITE 1 AC9 6 VAL A 29 TYR A 385 LEU A 388 PRO A 408 SITE 2 AC9 6 LEU A 459 HIS A 463 SITE 1 AD1 3 GLY A 426 GLU A 427 HIS A 428 CRYST1 74.620 74.620 288.430 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013401 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013401 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003467 0.00000