HEADER HYDROLASE 10-FEB-15 4Y3M TITLE ENDOTHIAPEPSIN IN COMPLEX WITH FRAGMENT 103 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOTHIAPEPSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARTATE PROTEASE; COMPND 5 EC: 3.4.23.22 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPHONECTRIA PARASITICA; SOURCE 3 ORGANISM_COMMON: CHESNUT BLIGHT FUNGUS; SOURCE 4 ORGANISM_TAXID: 5116 KEYWDS FRAGMENT SCREENING, HYDROLASE, INHIBITION EXPDTA X-RAY DIFFRACTION AUTHOR J.SCHIEBEL,A.HEINE,G.KLEBE REVDAT 2 10-JAN-24 4Y3M 1 REMARK REVDAT 1 17-FEB-16 4Y3M 0 JRNL AUTH J.SCHIEBEL,A.HEINE,G.KLEBE JRNL TITL CRYSTALLOGRAPHIC FRAGMENT SCREENING OF AN ENTIRE LIBRARY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.KOESTER,T.CRAAN,S.BRASS,C.HERHAUS,M.ZENTGRAF,L.NEUMANN, REMARK 1 AUTH 2 A.HEINE,G.KLEBE REMARK 1 TITL A SMALL NONRULE OF 3 COMPATIBLE FRAGMENT LIBRARY PROVIDES REMARK 1 TITL 2 HIGH HIT RATE OF ENDOTHIAPEPSIN CRYSTAL STRUCTURES WITH REMARK 1 TITL 3 VARIOUS FRAGMENT CHEMOTYPES. REMARK 1 REF J. MED. CHEM. V. 54 7784 2011 REMARK 1 REFN ISSN 1520-4804 REMARK 1 PMID 21972967 REMARK 1 DOI 10.1021/JM200642W REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1492 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 50416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2899 - 4.0593 1.00 2853 151 0.1721 0.1904 REMARK 3 2 4.0593 - 3.2223 1.00 2748 145 0.1469 0.1686 REMARK 3 3 3.2223 - 2.8151 1.00 2692 141 0.1357 0.1463 REMARK 3 4 2.8151 - 2.5578 1.00 2700 142 0.1311 0.1402 REMARK 3 5 2.5578 - 2.3744 1.00 2643 139 0.1302 0.1578 REMARK 3 6 2.3744 - 2.2345 1.00 2683 142 0.1251 0.1541 REMARK 3 7 2.2345 - 2.1226 1.00 2648 138 0.1226 0.1330 REMARK 3 8 2.1226 - 2.0302 1.00 2643 139 0.1264 0.1444 REMARK 3 9 2.0302 - 1.9520 1.00 2642 139 0.1304 0.1408 REMARK 3 10 1.9520 - 1.8847 1.00 2639 139 0.1374 0.1560 REMARK 3 11 1.8847 - 1.8257 1.00 2629 139 0.1450 0.1756 REMARK 3 12 1.8257 - 1.7735 1.00 2635 139 0.1484 0.1931 REMARK 3 13 1.7735 - 1.7268 1.00 2622 138 0.1592 0.1742 REMARK 3 14 1.7268 - 1.6847 1.00 2635 139 0.1655 0.1828 REMARK 3 15 1.6847 - 1.6464 1.00 2636 136 0.1668 0.1949 REMARK 3 16 1.6464 - 1.6114 1.00 2612 138 0.1717 0.2230 REMARK 3 17 1.6114 - 1.5791 1.00 2639 139 0.1783 0.2002 REMARK 3 18 1.5791 - 1.5493 0.99 2597 137 0.1794 0.2057 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2525 REMARK 3 ANGLE : 1.190 3459 REMARK 3 CHIRALITY : 0.048 408 REMARK 3 PLANARITY : 0.006 449 REMARK 3 DIHEDRAL : 11.473 835 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:62) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0825 7.0231 11.0724 REMARK 3 T TENSOR REMARK 3 T11: 0.0795 T22: 0.0764 REMARK 3 T33: 0.0833 T12: -0.0051 REMARK 3 T13: -0.0128 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.5527 L22: 1.3692 REMARK 3 L33: 1.4152 L12: -0.0173 REMARK 3 L13: 0.0018 L23: -0.2078 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: 0.0861 S13: -0.0051 REMARK 3 S21: -0.1470 S22: 0.0380 S23: 0.1668 REMARK 3 S31: -0.0011 S32: -0.0769 S33: 0.0081 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 63:81) REMARK 3 ORIGIN FOR THE GROUP (A): -19.1256 0.2820 0.6244 REMARK 3 T TENSOR REMARK 3 T11: 0.1318 T22: 0.1329 REMARK 3 T33: 0.0762 T12: -0.0002 REMARK 3 T13: -0.0046 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.8958 L22: 2.8142 REMARK 3 L33: 2.8536 L12: 0.5441 REMARK 3 L13: 0.4841 L23: -0.4174 REMARK 3 S TENSOR REMARK 3 S11: -0.0686 S12: 0.1923 S13: -0.0111 REMARK 3 S21: -0.1661 S22: 0.2064 S23: 0.0341 REMARK 3 S31: 0.1786 S32: -0.1070 S33: -0.1373 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 82:151) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5545 0.8305 6.9187 REMARK 3 T TENSOR REMARK 3 T11: 0.1215 T22: 0.0890 REMARK 3 T33: 0.0551 T12: -0.0072 REMARK 3 T13: 0.0047 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.9878 L22: 1.5264 REMARK 3 L33: 1.5561 L12: 0.0062 REMARK 3 L13: 0.2136 L23: -0.0126 REMARK 3 S TENSOR REMARK 3 S11: -0.0326 S12: 0.1119 S13: -0.0203 REMARK 3 S21: -0.1594 S22: 0.0273 S23: 0.0235 REMARK 3 S31: 0.1228 S32: 0.0618 S33: -0.0030 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 152:190) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0189 2.8549 26.1602 REMARK 3 T TENSOR REMARK 3 T11: 0.0561 T22: 0.0739 REMARK 3 T33: 0.0695 T12: -0.0044 REMARK 3 T13: 0.0064 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.6887 L22: 1.6148 REMARK 3 L33: 1.0198 L12: -0.3622 REMARK 3 L13: 0.1929 L23: -0.3076 REMARK 3 S TENSOR REMARK 3 S11: -0.0529 S12: -0.0005 S13: 0.0112 REMARK 3 S21: 0.0732 S22: -0.0110 S23: -0.1004 REMARK 3 S31: -0.0347 S32: 0.0728 S33: 0.0617 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 191:204) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5871 -13.0566 26.5192 REMARK 3 T TENSOR REMARK 3 T11: 0.0995 T22: 0.0635 REMARK 3 T33: 0.1046 T12: 0.0028 REMARK 3 T13: 0.0097 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.9167 L22: 0.7421 REMARK 3 L33: 5.1125 L12: 0.3368 REMARK 3 L13: -1.0462 L23: -1.8841 REMARK 3 S TENSOR REMARK 3 S11: 0.0233 S12: 0.0639 S13: -0.0439 REMARK 3 S21: -0.1266 S22: -0.0139 S23: 0.0307 REMARK 3 S31: 0.3244 S32: 0.0133 S33: 0.0060 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 205:242) REMARK 3 ORIGIN FOR THE GROUP (A): -21.9823 -13.0081 33.8716 REMARK 3 T TENSOR REMARK 3 T11: 0.0690 T22: 0.0489 REMARK 3 T33: 0.0717 T12: -0.0019 REMARK 3 T13: 0.0015 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.7339 L22: 1.3366 REMARK 3 L33: 1.9689 L12: 0.0954 REMARK 3 L13: -0.3605 L23: -1.0024 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: -0.0173 S13: -0.0003 REMARK 3 S21: 0.0311 S22: -0.0013 S23: -0.0215 REMARK 3 S31: 0.0604 S32: 0.0108 S33: 0.0178 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 243:258) REMARK 3 ORIGIN FOR THE GROUP (A): -36.1633 -10.0109 34.5014 REMARK 3 T TENSOR REMARK 3 T11: 0.0320 T22: 0.1229 REMARK 3 T33: 0.1196 T12: 0.0103 REMARK 3 T13: 0.0085 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 3.1384 L22: 7.2950 REMARK 3 L33: 7.0633 L12: -1.0553 REMARK 3 L13: -1.3563 L23: 0.9939 REMARK 3 S TENSOR REMARK 3 S11: -0.1205 S12: -0.0812 S13: -0.0304 REMARK 3 S21: 0.1248 S22: 0.1330 S23: 0.1153 REMARK 3 S31: 0.1752 S32: -0.0638 S33: -0.0035 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 259:330) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6190 -5.8704 30.5513 REMARK 3 T TENSOR REMARK 3 T11: 0.0636 T22: 0.0438 REMARK 3 T33: 0.0719 T12: 0.0091 REMARK 3 T13: 0.0067 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.4560 L22: 0.4548 REMARK 3 L33: 0.5762 L12: 0.4829 REMARK 3 L13: -0.0964 L23: -0.2647 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: 0.0025 S13: 0.0075 REMARK 3 S21: -0.0299 S22: -0.0008 S23: 0.0039 REMARK 3 S31: 0.0484 S32: -0.0057 S33: 0.0233 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Y3M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206794. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50445 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 45.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3PCW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 ACETATE, 24-30% PEG 4000, CRYSTALS OBTAINED BY STREAK-SEEDING, REMARK 280 PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.59750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.02550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.26400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.02550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.59750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.26400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 63 CE NZ REMARK 470 LYS A 68 CD CE NZ REMARK 470 LYS A 110 CE NZ REMARK 470 LYS A 111 CE NZ REMARK 470 LYS A 142 CE NZ REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 LYS A 243 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 129 -167.51 -80.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2111 DISTANCE = 5.98 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 45Y A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PB5 RELATED DB: PDB REMARK 900 RELATED ID: 3PGI RELATED DB: PDB REMARK 900 RELATED ID: 4Y35 RELATED DB: PDB REMARK 900 RELATED ID: 4Y36 RELATED DB: PDB REMARK 900 RELATED ID: 4Y37 RELATED DB: PDB REMARK 900 RELATED ID: 4Y39 RELATED DB: PDB REMARK 900 RELATED ID: 4Y3A RELATED DB: PDB REMARK 900 RELATED ID: 4Y3D RELATED DB: PDB REMARK 900 RELATED ID: 4Y3E RELATED DB: PDB REMARK 900 RELATED ID: 4Y3F RELATED DB: PDB REMARK 900 RELATED ID: 4Y3G RELATED DB: PDB REMARK 900 RELATED ID: 4Y3H RELATED DB: PDB REMARK 900 RELATED ID: 4Y3L RELATED DB: PDB REMARK 900 RELATED ID: 4Y3N RELATED DB: PDB REMARK 900 RELATED ID: 4Y3P RELATED DB: PDB REMARK 900 RELATED ID: 4Y3Q RELATED DB: PDB REMARK 900 RELATED ID: 4Y3R RELATED DB: PDB REMARK 900 RELATED ID: 4Y3S RELATED DB: PDB REMARK 900 RELATED ID: 4Y3T RELATED DB: PDB REMARK 900 RELATED ID: 4Y3W RELATED DB: PDB REMARK 900 RELATED ID: 4Y3X RELATED DB: PDB REMARK 900 RELATED ID: 4Y3Z RELATED DB: PDB REMARK 900 RELATED ID: 4Y41 RELATED DB: PDB REMARK 900 RELATED ID: 4Y43 RELATED DB: PDB REMARK 900 RELATED ID: 4Y44 RELATED DB: PDB REMARK 900 RELATED ID: 4Y45 RELATED DB: PDB REMARK 900 RELATED ID: 4Y47 RELATED DB: PDB REMARK 900 RELATED ID: 4Y4A RELATED DB: PDB REMARK 900 RELATED ID: 4Y4B RELATED DB: PDB REMARK 900 RELATED ID: 4Y4C RELATED DB: PDB REMARK 900 RELATED ID: 4Y4E RELATED DB: PDB REMARK 900 RELATED ID: 4Y4T RELATED DB: PDB REMARK 900 RELATED ID: 4Y4U RELATED DB: PDB REMARK 900 RELATED ID: 4Y4W RELATED DB: PDB REMARK 900 RELATED ID: 4Y4X RELATED DB: PDB REMARK 900 RELATED ID: 4Y4Z RELATED DB: PDB REMARK 900 RELATED ID: 4Y50 RELATED DB: PDB REMARK 900 RELATED ID: 4Y51 RELATED DB: PDB REMARK 900 RELATED ID: 4Y53 RELATED DB: PDB REMARK 900 RELATED ID: 4Y54 RELATED DB: PDB REMARK 900 RELATED ID: 4Y56 RELATED DB: PDB REMARK 900 RELATED ID: 4Y57 RELATED DB: PDB REMARK 900 RELATED ID: 4Y58 RELATED DB: PDB REMARK 900 RELATED ID: 4Y5A RELATED DB: PDB REMARK 900 RELATED ID: 4Y5B RELATED DB: PDB REMARK 900 RELATED ID: 4Y5C RELATED DB: PDB REMARK 900 RELATED ID: 4Y5E RELATED DB: PDB REMARK 900 RELATED ID: 4Y5G RELATED DB: PDB REMARK 900 RELATED ID: 4Y5K RELATED DB: PDB REMARK 900 RELATED ID: 4Y5L RELATED DB: PDB REMARK 900 RELATED ID: 4Y5M RELATED DB: PDB REMARK 900 RELATED ID: 4Y5N RELATED DB: PDB REMARK 900 RELATED ID: 4Y5P RELATED DB: PDB REMARK 900 RELATED ID: 4YCK RELATED DB: PDB REMARK 900 RELATED ID: 4YCT RELATED DB: PDB REMARK 900 RELATED ID: 4YCY RELATED DB: PDB REMARK 900 RELATED ID: 4YD3 RELATED DB: PDB REMARK 900 RELATED ID: 4YD4 RELATED DB: PDB REMARK 900 RELATED ID: 4YD5 RELATED DB: PDB REMARK 900 RELATED ID: 4YD6 RELATED DB: PDB REMARK 900 RELATED ID: 4YD7 RELATED DB: PDB REMARK 900 RELATED ID: 4Y48 RELATED DB: PDB REMARK 900 RELATED ID: 4Y4J RELATED DB: PDB REMARK 900 RELATED ID: 4Y4G RELATED DB: PDB REMARK 900 RELATED ID: 4Y4D RELATED DB: PDB REMARK 900 RELATED ID: 4Y38 RELATED DB: PDB REMARK 900 RELATED ID: 4Y3Y RELATED DB: PDB REMARK 900 RELATED ID: 4Y3J RELATED DB: PDB DBREF 4Y3M A 1 330 UNP P11838 CARP_CRYPA 90 419 SEQRES 1 A 330 SER THR GLY SER ALA THR THR THR PRO ILE ASP SER LEU SEQRES 2 A 330 ASP ASP ALA TYR ILE THR PRO VAL GLN ILE GLY THR PRO SEQRES 3 A 330 ALA GLN THR LEU ASN LEU ASP PHE ASP THR GLY SER SER SEQRES 4 A 330 ASP LEU TRP VAL PHE SER SER GLU THR THR ALA SER GLU SEQRES 5 A 330 VAL ASP GLY GLN THR ILE TYR THR PRO SER LYS SER THR SEQRES 6 A 330 THR ALA LYS LEU LEU SER GLY ALA THR TRP SER ILE SER SEQRES 7 A 330 TYR GLY ASP GLY SER SER SER SER GLY ASP VAL TYR THR SEQRES 8 A 330 ASP THR VAL SER VAL GLY GLY LEU THR VAL THR GLY GLN SEQRES 9 A 330 ALA VAL GLU SER ALA LYS LYS VAL SER SER SER PHE THR SEQRES 10 A 330 GLU ASP SER THR ILE ASP GLY LEU LEU GLY LEU ALA PHE SEQRES 11 A 330 SER THR LEU ASN THR VAL SER PRO THR GLN GLN LYS THR SEQRES 12 A 330 PHE PHE ASP ASN ALA LYS ALA SER LEU ASP SER PRO VAL SEQRES 13 A 330 PHE THR ALA ASP LEU GLY TYR HIS ALA PRO GLY THR TYR SEQRES 14 A 330 ASN PHE GLY PHE ILE ASP THR THR ALA TYR THR GLY SER SEQRES 15 A 330 ILE THR TYR THR ALA VAL SER THR LYS GLN GLY PHE TRP SEQRES 16 A 330 GLU TRP THR SER THR GLY TYR ALA VAL GLY SER GLY THR SEQRES 17 A 330 PHE LYS SER THR SER ILE ASP GLY ILE ALA ASP THR GLY SEQRES 18 A 330 THR THR LEU LEU TYR LEU PRO ALA THR VAL VAL SER ALA SEQRES 19 A 330 TYR TRP ALA GLN VAL SER GLY ALA LYS SER SER SER SER SEQRES 20 A 330 VAL GLY GLY TYR VAL PHE PRO CYS SER ALA THR LEU PRO SEQRES 21 A 330 SER PHE THR PHE GLY VAL GLY SER ALA ARG ILE VAL ILE SEQRES 22 A 330 PRO GLY ASP TYR ILE ASP PHE GLY PRO ILE SER THR GLY SEQRES 23 A 330 SER SER SER CYS PHE GLY GLY ILE GLN SER SER ALA GLY SEQRES 24 A 330 ILE GLY ILE ASN ILE PHE GLY ASP VAL ALA LEU LYS ALA SEQRES 25 A 330 ALA PHE VAL VAL PHE ASN GLY ALA THR THR PRO THR LEU SEQRES 26 A 330 GLY PHE ALA SER LYS HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET PGE A 404 10 HET 45Y A 405 12 HET PEG A 406 7 HET ACT A 407 4 HET ACT A 408 4 HETNAM GOL GLYCEROL HETNAM PGE TRIETHYLENE GLYCOL HETNAM 45Y 2-(4-FLUOROPHENYL)ACETOHYDRAZIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 3(C3 H8 O3) FORMUL 5 PGE C6 H14 O4 FORMUL 6 45Y C8 H9 F N2 O FORMUL 7 PEG C4 H10 O3 FORMUL 8 ACT 2(C2 H3 O2 1-) FORMUL 10 HOH *294(H2 O) HELIX 1 AA1 THR A 49 VAL A 53 5 5 HELIX 2 AA2 THR A 60 SER A 64 5 5 HELIX 3 AA3 SER A 113 ASP A 119 1 7 HELIX 4 AA4 PHE A 130 ASN A 134 5 5 HELIX 5 AA5 THR A 143 LYS A 149 1 7 HELIX 6 AA6 ALA A 150 LEU A 152 5 3 HELIX 7 AA7 PRO A 228 ALA A 237 1 10 HELIX 8 AA8 PRO A 274 TYR A 277 5 4 HELIX 9 AA9 GLY A 306 LYS A 311 1 6 SHEET 1 AA1 9 LYS A 68 SER A 78 0 SHEET 2 AA1 9 SER A 84 VAL A 96 -1 O VAL A 89 N LEU A 70 SHEET 3 AA1 9 TYR A 17 ILE A 23 -1 N GLN A 22 O SER A 95 SHEET 4 AA1 9 GLY A 3 PRO A 9 -1 N THR A 8 O ILE A 18 SHEET 5 AA1 9 GLY A 167 PHE A 171 -1 O GLY A 167 N THR A 7 SHEET 6 AA1 9 VAL A 156 ASP A 160 -1 N THR A 158 O ASN A 170 SHEET 7 AA1 9 PHE A 314 ASN A 318 -1 O PHE A 317 N PHE A 157 SHEET 8 AA1 9 THR A 324 ALA A 328 -1 O GLY A 326 N VAL A 316 SHEET 9 AA1 9 THR A 184 ALA A 187 -1 N THR A 184 O PHE A 327 SHEET 1 AA213 LYS A 68 SER A 78 0 SHEET 2 AA213 SER A 84 VAL A 96 -1 O VAL A 89 N LEU A 70 SHEET 3 AA213 LEU A 99 VAL A 112 -1 O VAL A 106 N TYR A 90 SHEET 4 AA213 LEU A 41 VAL A 43 1 N LEU A 41 O GLU A 107 SHEET 5 AA213 GLY A 124 GLY A 127 -1 O LEU A 125 N TRP A 42 SHEET 6 AA213 GLN A 28 ASP A 35 1 N ASP A 33 O GLY A 124 SHEET 7 AA213 TYR A 17 ILE A 23 -1 N ILE A 23 O GLN A 28 SHEET 8 AA213 GLY A 3 PRO A 9 -1 N THR A 8 O ILE A 18 SHEET 9 AA213 GLY A 167 PHE A 171 -1 O GLY A 167 N THR A 7 SHEET 10 AA213 VAL A 156 ASP A 160 -1 N THR A 158 O ASN A 170 SHEET 11 AA213 PHE A 314 ASN A 318 -1 O PHE A 317 N PHE A 157 SHEET 12 AA213 THR A 324 ALA A 328 -1 O GLY A 326 N VAL A 316 SHEET 13 AA213 THR A 184 ALA A 187 -1 N THR A 184 O PHE A 327 SHEET 1 AA3 7 ALA A 269 ILE A 273 0 SHEET 2 AA3 7 PHE A 262 VAL A 266 -1 N PHE A 262 O ILE A 273 SHEET 3 AA3 7 GLU A 196 VAL A 204 -1 N ALA A 203 O THR A 263 SHEET 4 AA3 7 LYS A 210 ALA A 218 -1 O LYS A 210 N TYR A 202 SHEET 5 AA3 7 ASN A 303 PHE A 305 1 O PHE A 305 N ILE A 217 SHEET 6 AA3 7 LEU A 225 LEU A 227 -1 N TYR A 226 O ILE A 304 SHEET 7 AA3 7 ILE A 294 SER A 296 1 O GLN A 295 N LEU A 225 SHEET 1 AA4 4 LYS A 243 SER A 245 0 SHEET 2 AA4 4 GLY A 250 PRO A 254 -1 O GLY A 250 N SER A 245 SHEET 3 AA4 4 SER A 289 GLY A 292 -1 O CYS A 290 N PHE A 253 SHEET 4 AA4 4 ASP A 279 PRO A 282 -1 N GLY A 281 O PHE A 291 SSBOND 1 CYS A 255 CYS A 290 1555 1555 2.04 CISPEP 1 THR A 25 PRO A 26 0 -6.62 CISPEP 2 SER A 137 PRO A 138 0 5.16 SITE 1 AC1 7 VAL A 272 PRO A 274 TYR A 277 ALA A 312 SITE 2 AC1 7 SER A 329 LYS A 330 HOH A1581 SITE 1 AC2 9 THR A 8 SER A 297 ALA A 298 GLY A 301 SITE 2 AC2 9 ILE A 302 HOH A 867 HOH A1038 HOH A1071 SITE 3 AC2 9 HOH A1172 SITE 1 AC3 5 THR A 6 GLY A 167 THR A 168 ALA A 298 SITE 2 AC3 5 HOH A1317 SITE 1 AC4 5 SER A 78 TYR A 79 GLY A 80 LEU A 133 SITE 2 AC4 5 45Y A 405 SITE 1 AC5 9 ASP A 35 GLY A 37 GLY A 80 PHE A 194 SITE 2 AC5 9 ASP A 219 THR A 222 ILE A 302 PGE A 404 SITE 3 AC5 9 HOH A 537 SITE 1 AC6 2 ASP A 15 LEU A 224 SITE 1 AC7 3 CYS A 255 ASP A 279 CYS A 290 SITE 1 AC8 4 SER A 233 ALA A 237 ALA A 242 HOH A2198 CRYST1 45.195 72.528 104.051 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022126 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013788 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009611 0.00000