HEADER IMMUNE SYSTEM 10-FEB-15 4Y4K TITLE CRYSTAL STRUCTURE OF THE MCD1D/EF77/INKTCR TERNARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIGEN-PRESENTING GLYCOPROTEIN CD1D1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ECTODOMAIN, UNP RESIDUES 19-297; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 21-119; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: CHIMERIC TCR VALPHA14JALPHA18 CHAIN (MOUSE VARIABLE, HUMAN COMPND 13 CONSTANT DOMAIN); COMPND 14 CHAIN: C; COMPND 15 SYNONYM: PROTEIN TRAV11D,HUMAN NKT TCR BETA CHAIN; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: CHIMERIC TCR VBETA8.2 CHAIN (MOUSE VARIABLE, HUMAN CONSTANT COMPND 19 DOMAIN); COMPND 20 CHAIN: D; COMPND 21 SYNONYM: BETA-CHAIN,T-CELL RECEPTOR BETA-2 CHAIN C REGION; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CD1D1, CD1.1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBACPHP10; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: B2M; SOURCE 16 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PBACP10PH; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: MOUSE, HUMAN; SOURCE 24 ORGANISM_TAXID: 10090, 9606; SOURCE 25 GENE: TRAV11, TRAV11D, B2M, HDCMA22P; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 27 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 28 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 29 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 30 EXPRESSION_SYSTEM_PLASMID: PET22B+; SOURCE 31 MOL_ID: 4; SOURCE 32 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 33 ORGANISM_COMMON: MOUSE, HUMAN; SOURCE 34 ORGANISM_TAXID: 10090, 9606; SOURCE 35 GENE: TRBC2, TCRBC2; SOURCE 36 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 37 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 38 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 39 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 40 EXPRESSION_SYSTEM_PLASMID: PET22B+ KEYWDS MHC-FOLD, IG-FOLD, GLYCOLIPID ANTIGEN PRESENTATION, T CELL RECEPTOR, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.M.ZAJONC,A.M.BIRKHOLZ REVDAT 6 27-SEP-23 4Y4K 1 HETSYN LINK REVDAT 5 29-JUL-20 4Y4K 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 11-DEC-19 4Y4K 1 REMARK REVDAT 3 13-SEP-17 4Y4K 1 REMARK REVDAT 2 27-JUL-16 4Y4K 1 REMARK REVDAT 1 27-MAY-15 4Y4K 0 JRNL AUTH A.BIRKHOLZ,M.NEMCOVIC,E.D.YU,E.GIRARDI,J.WANG,A.KHURANA, JRNL AUTH 2 N.PAUWELS,R.W.FRANCK,M.TSUJI,A.HOWELL,S.CALENBERGH, JRNL AUTH 3 M.KRONENBERG,D.M.ZAJONC JRNL TITL STRUCTURAL MODIFICATIONS OF ALPHAGALCER IN BOTH LIPID AND JRNL TITL 2 CARBOHYDRATE MOIETY INFLUENCE ACTIVATION OF MURINE AND HUMAN JRNL TITL 3 INKT CELLS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 95.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 23746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1272 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1751 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6165 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 122 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : 0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.410 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.348 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 40.106 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.914 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.858 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6492 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5789 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8877 ; 1.466 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13272 ; 0.968 ; 3.005 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 805 ; 6.898 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 280 ;34.363 ;24.250 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 928 ;15.951 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;18.914 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 995 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7391 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1524 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3223 ; 0.860 ; 1.564 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3222 ; 0.860 ; 1.564 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4021 ; 1.558 ; 2.337 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 240 REMARK 3 ORIGIN FOR THE GROUP (A): -4.1706 13.7341 17.4260 REMARK 3 T TENSOR REMARK 3 T11: 0.0914 T22: 0.3536 REMARK 3 T33: 0.0549 T12: -0.0028 REMARK 3 T13: -0.0066 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 1.0114 L22: 0.9182 REMARK 3 L33: 0.0886 L12: 0.4067 REMARK 3 L13: -0.2445 L23: 0.0211 REMARK 3 S TENSOR REMARK 3 S11: -0.0203 S12: 0.0556 S13: -0.1241 REMARK 3 S21: 0.0173 S22: -0.0415 S23: 0.0841 REMARK 3 S31: -0.0097 S32: 0.0074 S33: 0.0618 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 97 REMARK 3 ORIGIN FOR THE GROUP (A): -22.8221 20.4256 20.6891 REMARK 3 T TENSOR REMARK 3 T11: 0.1241 T22: 0.3358 REMARK 3 T33: 0.1683 T12: 0.0153 REMARK 3 T13: 0.0061 T23: -0.0346 REMARK 3 L TENSOR REMARK 3 L11: 3.3151 L22: 1.5756 REMARK 3 L33: 0.5351 L12: 0.6257 REMARK 3 L13: -0.7413 L23: -0.7402 REMARK 3 S TENSOR REMARK 3 S11: -0.0589 S12: 0.2140 S13: 0.0603 REMARK 3 S21: 0.2375 S22: 0.0046 S23: 0.1773 REMARK 3 S31: -0.1087 S32: -0.0556 S33: 0.0543 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 203 REMARK 3 ORIGIN FOR THE GROUP (A): 43.1828 51.3664 27.2339 REMARK 3 T TENSOR REMARK 3 T11: 0.1276 T22: 0.4443 REMARK 3 T33: 0.0244 T12: -0.0141 REMARK 3 T13: -0.0334 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 0.5529 L22: 0.8693 REMARK 3 L33: 0.2918 L12: 0.5179 REMARK 3 L13: 0.0164 L23: -0.2910 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: -0.0067 S13: -0.0910 REMARK 3 S21: 0.0911 S22: -0.0287 S23: -0.0862 REMARK 3 S31: -0.0505 S32: 0.0730 S33: 0.0031 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 240 REMARK 3 ORIGIN FOR THE GROUP (A): 34.7060 62.5606 13.5326 REMARK 3 T TENSOR REMARK 3 T11: 0.1096 T22: 0.3715 REMARK 3 T33: 0.0059 T12: 0.0018 REMARK 3 T13: -0.0016 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.9093 L22: 1.1507 REMARK 3 L33: 0.2784 L12: 0.7555 REMARK 3 L13: -0.2493 L23: -0.1941 REMARK 3 S TENSOR REMARK 3 S11: -0.0278 S12: -0.0979 S13: 0.0105 REMARK 3 S21: -0.0507 S22: 0.0075 S23: 0.0488 REMARK 3 S31: -0.0157 S32: 0.0284 S33: 0.0203 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4Y4K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000206854. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9767 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25092 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 95.695 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.17200 REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.59400 REMARK 200 R SYM FOR SHELL (I) : 0.59400 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2Q7Y AND 3QUZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 0.2M AMMONIUM CITRATE REMARK 280 DIBASIC, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295.5K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.54000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.54000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.48000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 95.53500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.48000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 95.53500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.54000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.48000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 95.53500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.54000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.48000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 95.53500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 GLN A 4 REMARK 465 GLN A 5 REMARK 465 SER A 198 REMARK 465 SER A 199 REMARK 465 ALA A 200 REMARK 465 HIS A 201 REMARK 465 GLY A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 HIS A 282 REMARK 465 HIS A 283 REMARK 465 HIS A 284 REMARK 465 HIS A 285 REMARK 465 ILE B 1 REMARK 465 ASP B 98 REMARK 465 MET B 99 REMARK 465 MET C -1 REMARK 465 LYS C 0 REMARK 465 SER C 182 REMARK 465 PRO C 204 REMARK 465 GLU C 205 REMARK 465 SER C 206 REMARK 465 SER C 207 REMARK 465 MET D 0 REMARK 465 GLU D 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 ARG A 11 CZ NH1 NH2 REMARK 470 ARG A 21 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 61 CG CD OE1 NE2 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 ASN A 110 CG OD1 ND2 REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 205 CG CD OE1 NE2 REMARK 470 LEU A 206 CG CD1 CD2 REMARK 470 ARG A 224 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 226 CG OD1 OD2 REMARK 470 GLN A 227 CG CD OE1 NE2 REMARK 470 GLN A 229 CG CD OE1 NE2 REMARK 470 GLN A 230 CG CD OE1 NE2 REMARK 470 ARG A 234 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 252 CG OD1 OD2 REMARK 470 GLU A 254 CG CD OE1 OE2 REMARK 470 ARG A 264 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 273 CG CD OE1 NE2 REMARK 470 ILE A 275 CG1 CG2 CD1 REMARK 470 ILE A 276 CG1 CG2 CD1 REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 GLN B 29 CG CD OE1 NE2 REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 ARG B 81 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 ARG B 97 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 4 CG CD OE1 OE2 REMARK 470 GLN C 8 CG CD OE1 NE2 REMARK 470 LYS C 41 CG CD CE NZ REMARK 470 GLN C 108 CG CD OE1 NE2 REMARK 470 GLN C 116 CG CD OE1 NE2 REMARK 470 LYS C 129 CG CD CE NZ REMARK 470 SER C 130 OG REMARK 470 SER C 131 OG REMARK 470 SER C 143 OG REMARK 470 SER C 150 OG REMARK 470 LYS C 151 CG CD CE NZ REMARK 470 ASP C 152 CG OD1 OD2 REMARK 470 SER C 153 OG REMARK 470 LYS C 160 CG CD CE NZ REMARK 470 SER C 167 OG REMARK 470 SER C 179 OG REMARK 470 LYS C 181 CG CD CE NZ REMARK 470 ASP C 183 CG OD1 OD2 REMARK 470 ASN C 192 CG OD1 ND2 REMARK 470 GLU C 197 CG CD OE1 OE2 REMARK 470 LYS D 129 CG CD CE NZ REMARK 470 GLN D 172 CG CD OE1 NE2 REMARK 470 GLN D 177 OE1 NE2 REMARK 470 ASN D 181 CG OD1 ND2 REMARK 470 GLU D 216 CG CD OE1 OE2 REMARK 470 ASN D 217 CG OD1 ND2 REMARK 470 ASP D 223 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 153 OG1 THR A 156 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 89 143.65 -32.20 REMARK 500 PRO A 108 151.91 -40.32 REMARK 500 LYS A 180 -54.02 -29.28 REMARK 500 GLU A 228 104.03 -45.45 REMARK 500 ASP B 59 21.31 -77.04 REMARK 500 TRP B 60 15.25 58.88 REMARK 500 SER B 86 0.88 -67.39 REMARK 500 LYS C 41 -158.24 -99.03 REMARK 500 ALA C 78 79.11 41.94 REMARK 500 ALA C 85 176.79 177.16 REMARK 500 ASP C 119 55.76 -161.70 REMARK 500 SER C 131 -9.46 -59.59 REMARK 500 LYS C 160 151.46 -45.18 REMARK 500 CYS C 161 106.92 -166.39 REMARK 500 SER C 179 158.72 171.44 REMARK 500 ASN C 192 16.54 -66.58 REMARK 500 PRO C 202 -171.17 -64.91 REMARK 500 THR D 39 129.54 -31.36 REMARK 500 ILE D 46 -64.48 -101.30 REMARK 500 ASP D 95 -147.87 -94.12 REMARK 500 PRO D 127 137.41 -36.56 REMARK 500 ASP D 150 38.41 -80.46 REMARK 500 HIS D 151 79.35 -108.07 REMARK 500 SER D 165 127.16 -32.13 REMARK 500 ASP D 170 134.22 -38.82 REMARK 500 ASP D 182 74.79 -151.90 REMARK 500 ASN D 217 52.07 -95.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Y4F RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXES WITH DIFFERENT GLYCOLIPID ANTIGENS REMARK 900 RELATED ID: 4Y4H RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXES WITH DIFFERENT GLYCOLIPID ANTIGENS REMARK 900 RELATED ID: 4Y16 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXES WITH DIFFERENT GLYCOLIPID ANTIGENS REMARK 900 RELATED ID: 4Y2D RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXES WITH DIFFERENT GLYCOLIPID ANTIGENS REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHIMERIC TCR VALPHA14JALPHA18 CHAIN (CHAIN C) IS MADE OF: MOUSE REMARK 999 VARIABLE DOMAIN REMARK 999 (MKTQVEQSPQSLVVRQGENCVLQCNYSVTPDNHLRWFKQDTGKGLVSLTVLVDQKDKTSNGRYSATL REMARK 999 DKDAKHSTLHITATLLDDTATYICVVGDRGSALGRLHFGAGTQLIVI) AND HUMAN CONSTANT REMARK 999 DOMAIN (PDIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKS REMARK 999 NSAVAWSNKSDFACANAFNNSIIPEDTFFPSPESS) CHIMERIC TCR VBETA8.2 CHAIN REMARK 999 (CHAIN D) IS MADE OF: MOUSE VARIABLE DOMAIN REMARK 999 (MEAAVTQSPRNKVAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKA REMARK 999 SRPSQENFSLILELATPSQTSVYFCASGDEGYTQYFGPGTRLLVLEDLRNVTPPKVSLFEPSK) AND REMARK 999 HUMAN CONSTANT DOMAIN REMARK 999 REMARK 999 (AEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSAT DBREF 4Y4K A 1 279 UNP P11609 CD1D1_MOUSE 19 297 DBREF 4Y4K B 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 4Y4K C -1 207 PDB 4Y4K 4Y4K -1 207 DBREF 4Y4K D 0 240 PDB 4Y4K 4Y4K 0 240 SEQADV 4Y4K HIS A 201 UNP P11609 ASP 219 VARIANT SEQADV 4Y4K HIS A 280 UNP P11609 EXPRESSION TAG SEQADV 4Y4K HIS A 281 UNP P11609 EXPRESSION TAG SEQADV 4Y4K HIS A 282 UNP P11609 EXPRESSION TAG SEQADV 4Y4K HIS A 283 UNP P11609 EXPRESSION TAG SEQADV 4Y4K HIS A 284 UNP P11609 EXPRESSION TAG SEQADV 4Y4K HIS A 285 UNP P11609 EXPRESSION TAG SEQRES 1 A 285 SER GLU ALA GLN GLN LYS ASN TYR THR PHE ARG CYS LEU SEQRES 2 A 285 GLN MET SER SER PHE ALA ASN ARG SER TRP SER ARG THR SEQRES 3 A 285 ASP SER VAL VAL TRP LEU GLY ASP LEU GLN THR HIS ARG SEQRES 4 A 285 TRP SER ASN ASP SER ALA THR ILE SER PHE THR LYS PRO SEQRES 5 A 285 TRP SER GLN GLY LYS LEU SER ASN GLN GLN TRP GLU LYS SEQRES 6 A 285 LEU GLN HIS MET PHE GLN VAL TYR ARG VAL SER PHE THR SEQRES 7 A 285 ARG ASP ILE GLN GLU LEU VAL LYS MET MET SER PRO LYS SEQRES 8 A 285 GLU ASP TYR PRO ILE GLU ILE GLN LEU SER ALA GLY CYS SEQRES 9 A 285 GLU MET TYR PRO GLY ASN ALA SER GLU SER PHE LEU HIS SEQRES 10 A 285 VAL ALA PHE GLN GLY LYS TYR VAL VAL ARG PHE TRP GLY SEQRES 11 A 285 THR SER TRP GLN THR VAL PRO GLY ALA PRO SER TRP LEU SEQRES 12 A 285 ASP LEU PRO ILE LYS VAL LEU ASN ALA ASP GLN GLY THR SEQRES 13 A 285 SER ALA THR VAL GLN MET LEU LEU ASN ASP THR CYS PRO SEQRES 14 A 285 LEU PHE VAL ARG GLY LEU LEU GLU ALA GLY LYS SER ASP SEQRES 15 A 285 LEU GLU LYS GLN GLU LYS PRO VAL ALA TRP LEU SER SER SEQRES 16 A 285 VAL PRO SER SER ALA HIS GLY HIS ARG GLN LEU VAL CYS SEQRES 17 A 285 HIS VAL SER GLY PHE TYR PRO LYS PRO VAL TRP VAL MET SEQRES 18 A 285 TRP MET ARG GLY ASP GLN GLU GLN GLN GLY THR HIS ARG SEQRES 19 A 285 GLY ASP PHE LEU PRO ASN ALA ASP GLU THR TRP TYR LEU SEQRES 20 A 285 GLN ALA THR LEU ASP VAL GLU ALA GLY GLU GLU ALA GLY SEQRES 21 A 285 LEU ALA CYS ARG VAL LYS HIS SER SER LEU GLY GLY GLN SEQRES 22 A 285 ASP ILE ILE LEU TYR TRP HIS HIS HIS HIS HIS HIS SEQRES 1 B 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 B 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 B 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 B 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 B 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 B 99 ALA CYS ARG VAL LYS HIS ALA SER MET ALA GLU PRO LYS SEQRES 8 B 99 THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 C 209 MET LYS THR GLN VAL GLU GLN SER PRO GLN SER LEU VAL SEQRES 2 C 209 VAL ARG GLN GLY GLU ASN CYS VAL LEU GLN CYS ASN TYR SEQRES 3 C 209 SER VAL THR PRO ASP ASN HIS LEU ARG TRP PHE LYS GLN SEQRES 4 C 209 ASP THR GLY LYS GLY LEU VAL SER LEU THR VAL LEU VAL SEQRES 5 C 209 ASP GLN LYS ASP LYS THR SER ASN GLY ARG TYR SER ALA SEQRES 6 C 209 THR LEU ASP LYS ASP ALA LYS HIS SER THR LEU HIS ILE SEQRES 7 C 209 THR ALA THR LEU LEU ASP ASP THR ALA THR TYR ILE CYS SEQRES 8 C 209 VAL VAL GLY ASP ARG GLY SER ALA LEU GLY ARG LEU HIS SEQRES 9 C 209 PHE GLY ALA GLY THR GLN LEU ILE VAL ILE PRO ASP ILE SEQRES 10 C 209 GLN ASN PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER SEQRES 11 C 209 LYS SER SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE SEQRES 12 C 209 ASP SER GLN THR ASN VAL SER GLN SER LYS ASP SER ASP SEQRES 13 C 209 VAL TYR ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER SEQRES 14 C 209 MET ASP PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN SEQRES 15 C 209 LYS SER ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER SEQRES 16 C 209 ILE ILE PRO GLU ASP THR PHE PHE PRO SER PRO GLU SER SEQRES 17 C 209 SER SEQRES 1 D 241 MET GLU ALA ALA VAL THR GLN SER PRO ARG ASN LYS VAL SEQRES 2 D 241 ALA VAL THR GLY GLY LYS VAL THR LEU SER CYS ASN GLN SEQRES 3 D 241 THR ASN ASN HIS ASN ASN MET TYR TRP TYR ARG GLN ASP SEQRES 4 D 241 THR GLY HIS GLY LEU ARG LEU ILE HIS TYR SER TYR GLY SEQRES 5 D 241 ALA GLY SER THR GLU LYS GLY ASP ILE PRO ASP GLY TYR SEQRES 6 D 241 LYS ALA SER ARG PRO SER GLN GLU ASN PHE SER LEU ILE SEQRES 7 D 241 LEU GLU LEU ALA THR PRO SER GLN THR SER VAL TYR PHE SEQRES 8 D 241 CYS ALA SER GLY ASP GLU GLY TYR THR GLN TYR PHE GLY SEQRES 9 D 241 PRO GLY THR ARG LEU LEU VAL LEU GLU ASP LEU ARG ASN SEQRES 10 D 241 VAL THR PRO PRO LYS VAL SER LEU PHE GLU PRO SER LYS SEQRES 11 D 241 ALA GLU ILE SER HIS THR GLN LYS ALA THR LEU VAL CYS SEQRES 12 D 241 LEU ALA THR GLY PHE TYR PRO ASP HIS VAL GLU LEU SER SEQRES 13 D 241 TRP TRP VAL ASN GLY LYS GLU VAL HIS SER GLY VAL CYS SEQRES 14 D 241 THR ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN SEQRES 15 D 241 ASP SER ARG TYR SER LEU SER SER ARG LEU ARG VAL SER SEQRES 16 D 241 ALA THR PHE TRP GLN ASN PRO ARG ASN HIS PHE ARG CYS SEQRES 17 D 241 GLN VAL GLN PHE TYR GLY LEU SER GLU ASN ASP GLU TRP SEQRES 18 D 241 THR GLN ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SER SEQRES 19 D 241 ALA GLU ALA TRP GLY ARG ALA HET NAG E 1 14 HET NAG E 2 14 HET FUC E 3 10 HET NAG A 301 14 HET NAG A 305 14 HET 49Y A 306 56 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM 49Y (4Z)-9-[(1R,2R)-2-DECYLCYCLOPROPYL]-N-[(2S,3S,4S)-1- HETNAM 2 49Y (ALPHA-D-GALACTOPYRANOSYLOXY)-3,4-DIHYDROXYOCTADECAN- HETNAM 3 49Y 2-YL]NON-4-ENAMIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 5 NAG 4(C8 H15 N O6) FORMUL 5 FUC C6 H12 O5 FORMUL 8 49Y C46 H87 N O9 HELIX 1 AA1 SER A 59 SER A 89 1 31 HELIX 2 AA2 PRO A 140 TRP A 142 5 3 HELIX 3 AA3 LEU A 143 ASN A 151 1 9 HELIX 4 AA4 ASP A 153 ASP A 166 1 14 HELIX 5 AA5 ASP A 166 GLU A 184 1 19 HELIX 6 AA6 LEU C 80 THR C 84 5 5 HELIX 7 AA7 ALA C 185 PHE C 190 1 6 HELIX 8 AA8 THR D 82 THR D 86 5 5 HELIX 9 AA9 SER D 128 GLN D 136 1 9 HELIX 10 AB1 ALA D 195 ASN D 200 1 6 SHEET 1 AA1 8 SER A 48 PHE A 49 0 SHEET 2 AA1 8 LEU A 35 TRP A 40 -1 N ARG A 39 O SER A 48 SHEET 3 AA1 8 SER A 24 LEU A 32 -1 N VAL A 30 O THR A 37 SHEET 4 AA1 8 PHE A 10 PHE A 18 -1 N ARG A 11 O TRP A 31 SHEET 5 AA1 8 ILE A 96 TYR A 107 -1 O ALA A 102 N CYS A 12 SHEET 6 AA1 8 ALA A 111 PHE A 120 -1 O HIS A 117 N SER A 101 SHEET 7 AA1 8 LYS A 123 TRP A 129 -1 O VAL A 126 N VAL A 118 SHEET 8 AA1 8 SER A 132 THR A 135 -1 O SER A 132 N TRP A 129 SHEET 1 AA2 4 VAL A 190 VAL A 196 0 SHEET 2 AA2 4 GLN A 205 PHE A 213 -1 O GLN A 205 N VAL A 196 SHEET 3 AA2 4 TRP A 245 ASP A 252 -1 O ALA A 249 N CYS A 208 SHEET 4 AA2 4 HIS A 233 ARG A 234 -1 N HIS A 233 O THR A 250 SHEET 1 AA3 4 VAL A 190 VAL A 196 0 SHEET 2 AA3 4 GLN A 205 PHE A 213 -1 O GLN A 205 N VAL A 196 SHEET 3 AA3 4 TRP A 245 ASP A 252 -1 O ALA A 249 N CYS A 208 SHEET 4 AA3 4 LEU A 238 PRO A 239 -1 N LEU A 238 O TYR A 246 SHEET 1 AA4 4 GLN A 227 GLU A 228 0 SHEET 2 AA4 4 TRP A 219 ARG A 224 -1 N ARG A 224 O GLN A 227 SHEET 3 AA4 4 LEU A 261 LYS A 266 -1 O ALA A 262 N MET A 223 SHEET 4 AA4 4 ILE A 275 TYR A 278 -1 O ILE A 275 N VAL A 265 SHEET 1 AA5 4 GLN B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O ALA B 66 N CYS B 25 SHEET 4 AA5 4 GLU B 50 MET B 51 -1 N GLU B 50 O HIS B 67 SHEET 1 AA6 4 GLN B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O ALA B 66 N CYS B 25 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 LYS B 44 LYS B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O LYS B 44 SHEET 3 AA7 4 TYR B 78 LYS B 83 -1 O ALA B 79 N LEU B 40 SHEET 4 AA7 4 LYS B 91 TYR B 94 -1 O VAL B 93 N CYS B 80 SHEET 1 AA8 5 VAL C 3 SER C 6 0 SHEET 2 AA8 5 CYS C 18 TYR C 24 -1 O ASN C 23 N GLU C 4 SHEET 3 AA8 5 HIS C 71 ILE C 76 -1 O LEU C 74 N LEU C 20 SHEET 4 AA8 5 TYR C 61 ASP C 66 -1 N ASP C 66 O HIS C 71 SHEET 5 AA8 5 LYS C 53 ASN C 58 -1 N ASN C 58 O TYR C 61 SHEET 1 AA9 5 SER C 9 ARG C 13 0 SHEET 2 AA9 5 THR C 107 ILE C 112 1 O ILE C 112 N VAL C 12 SHEET 3 AA9 5 ALA C 85 GLY C 92 -1 N ALA C 85 O LEU C 109 SHEET 4 AA9 5 HIS C 31 GLN C 37 -1 N ARG C 33 O VAL C 90 SHEET 5 AA9 5 VAL C 44 LEU C 49 -1 O VAL C 44 N LYS C 36 SHEET 1 AB1 4 SER C 9 ARG C 13 0 SHEET 2 AB1 4 THR C 107 ILE C 112 1 O ILE C 112 N VAL C 12 SHEET 3 AB1 4 ALA C 85 GLY C 92 -1 N ALA C 85 O LEU C 109 SHEET 4 AB1 4 LEU C 101 PHE C 103 -1 O HIS C 102 N VAL C 91 SHEET 1 AB2 8 VAL C 155 ILE C 157 0 SHEET 2 AB2 8 PHE C 170 SER C 179 -1 O TRP C 178 N TYR C 156 SHEET 3 AB2 8 SER C 134 THR C 139 -1 N CYS C 136 O ALA C 177 SHEET 4 AB2 8 ALA C 121 ASP C 127 -1 N ALA C 121 O THR C 139 SHEET 5 AB2 8 LYS D 121 GLU D 126 -1 O GLU D 126 N ARG C 126 SHEET 6 AB2 8 LYS D 137 PHE D 147 -1 O VAL D 141 N PHE D 125 SHEET 7 AB2 8 TYR D 185 SER D 194 -1 O VAL D 193 N ALA D 138 SHEET 8 AB2 8 VAL D 167 THR D 169 -1 N CYS D 168 O ARG D 190 SHEET 1 AB3 8 CYS C 161 MET C 165 0 SHEET 2 AB3 8 PHE C 170 SER C 179 -1 O PHE C 170 N MET C 165 SHEET 3 AB3 8 SER C 134 THR C 139 -1 N CYS C 136 O ALA C 177 SHEET 4 AB3 8 ALA C 121 ASP C 127 -1 N ALA C 121 O THR C 139 SHEET 5 AB3 8 LYS D 121 GLU D 126 -1 O GLU D 126 N ARG C 126 SHEET 6 AB3 8 LYS D 137 PHE D 147 -1 O VAL D 141 N PHE D 125 SHEET 7 AB3 8 TYR D 185 SER D 194 -1 O VAL D 193 N ALA D 138 SHEET 8 AB3 8 LEU D 174 LYS D 175 -1 N LEU D 174 O SER D 186 SHEET 1 AB4 4 THR D 5 SER D 7 0 SHEET 2 AB4 4 VAL D 19 ASN D 24 -1 O ASN D 24 N THR D 5 SHEET 3 AB4 4 ASN D 73 LEU D 78 -1 O LEU D 78 N VAL D 19 SHEET 4 AB4 4 LYS D 65 SER D 67 -1 N LYS D 65 O ILE D 77 SHEET 1 AB5 6 ASN D 10 VAL D 14 0 SHEET 2 AB5 6 THR D 106 LEU D 111 1 O LEU D 111 N ALA D 13 SHEET 3 AB5 6 SER D 87 GLY D 94 -1 N TYR D 89 O THR D 106 SHEET 4 AB5 6 ASN D 31 GLN D 37 -1 N TYR D 35 O PHE D 90 SHEET 5 AB5 6 LEU D 43 SER D 49 -1 O ILE D 46 N TRP D 34 SHEET 6 AB5 6 GLU D 56 LYS D 57 -1 O GLU D 56 N TYR D 48 SHEET 1 AB6 4 ASN D 10 VAL D 14 0 SHEET 2 AB6 4 THR D 106 LEU D 111 1 O LEU D 111 N ALA D 13 SHEET 3 AB6 4 SER D 87 GLY D 94 -1 N TYR D 89 O THR D 106 SHEET 4 AB6 4 TYR D 101 PHE D 102 -1 O TYR D 101 N SER D 93 SHEET 1 AB7 4 LYS D 161 VAL D 163 0 SHEET 2 AB7 4 VAL D 152 VAL D 158 -1 N TRP D 156 O VAL D 163 SHEET 3 AB7 4 HIS D 204 PHE D 211 -1 O GLN D 208 N SER D 155 SHEET 4 AB7 4 GLN D 230 TRP D 237 -1 O VAL D 232 N VAL D 209 SSBOND 1 CYS A 104 CYS A 168 1555 1555 2.09 SSBOND 2 CYS A 208 CYS A 263 1555 1555 2.03 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.05 SSBOND 4 CYS C 22 CYS C 89 1555 1555 2.04 SSBOND 5 CYS C 136 CYS C 186 1555 1555 2.04 SSBOND 6 CYS C 161 CYS D 168 1555 1555 2.06 SSBOND 7 CYS D 23 CYS D 91 1555 1555 2.01 SSBOND 8 CYS D 142 CYS D 207 1555 1555 2.00 LINK ND2 ASN A 20 C1 NAG A 305 1555 1555 1.47 LINK ND2 ASN A 42 C1 NAG A 301 1555 1555 1.45 LINK ND2 ASN A 165 C1 NAG E 1 1555 1555 1.46 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O6 NAG E 1 C1 FUC E 3 1555 1555 1.47 CISPEP 1 SER A 89 PRO A 90 0 5.55 CISPEP 2 TYR A 94 PRO A 95 0 -6.51 CISPEP 3 TYR A 214 PRO A 215 0 5.29 CISPEP 4 HIS B 31 PRO B 32 0 -2.52 CISPEP 5 HIS B 31 PRO B 32 0 2.64 CISPEP 6 SER C 6 PRO C 7 0 -5.41 CISPEP 7 THR C 27 PRO C 28 0 -12.34 CISPEP 8 SER D 7 PRO D 8 0 -9.43 CISPEP 9 TYR D 148 PRO D 149 0 -5.29 CRYST1 78.960 191.070 151.080 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012665 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005234 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006619 0.00000