data_4Y60 # _entry.id 4Y60 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4Y60 pdb_00004y60 10.2210/pdb4y60/pdb WWPDB D_1000206393 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-03-02 2 'Structure model' 1 1 2016-04-06 3 'Structure model' 1 2 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' citation 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_id_CSD' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4Y60 _pdbx_database_status.recvd_initial_deposition_date 2015-02-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Narasimhan, K.' 1 'Prokoph, N.' 2 'Kolatkar, P.' 3 'Robinson, H.' 4 'Jauch, R.' 5 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 44 _citation.language ? _citation.page_first 3922 _citation.page_last 3935 _citation.title 'Structure and decoy-mediated inhibition of the SOX18/Prox1-DNA interaction.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkw130 _citation.pdbx_database_id_PubMed 26939885 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Klaus, M.' 1 ? primary 'Prokoph, N.' 2 ? primary 'Girbig, M.' 3 ? primary 'Wang, X.' 4 ? primary 'Huang, Y.H.' 5 ? primary 'Srivastava, Y.' 6 ? primary 'Hou, L.' 7 ? primary 'Narasimhan, K.' 8 ? primary 'Kolatkar, P.R.' 9 ? primary 'Francois, M.' 10 ? primary 'Jauch, R.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcription factor SOX-18' 9771.423 1 ? ? 'UNP RESIDUES 77-155' ? 2 polymer syn ;DNA (5'-D(*CP*AP*CP*TP*AP*GP*CP*AP*TP*TP*GP*TP*CP*TP*GP*GP*G)-3') ; 5218.383 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*GP*CP*CP*CP*AP*GP*AP*CP*AP*AP*TP*GP*CP*TP*AP*GP*T)-3') ; 5196.387 1 ? ? ? ? 4 water nat water 18.015 194 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GLRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNTAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQ GLRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNTAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQ C ? 2 polydeoxyribonucleotide no no '(DC)(DA)(DC)(DT)(DA)(DG)(DC)(DA)(DT)(DT)(DG)(DT)(DC)(DT)(DG)(DG)(DG)' CACTAGCATTGTCTGGG A ? 3 polydeoxyribonucleotide no no '(DG)(DC)(DC)(DC)(DA)(DG)(DA)(DC)(DA)(DA)(DT)(DG)(DC)(DT)(DA)(DG)(DT)' GCCCAGACAATGCTAGT B ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LEU n 1 3 ARG n 1 4 ILE n 1 5 ARG n 1 6 ARG n 1 7 PRO n 1 8 MET n 1 9 ASN n 1 10 ALA n 1 11 PHE n 1 12 MET n 1 13 VAL n 1 14 TRP n 1 15 ALA n 1 16 LYS n 1 17 ASP n 1 18 GLU n 1 19 ARG n 1 20 LYS n 1 21 ARG n 1 22 LEU n 1 23 ALA n 1 24 GLN n 1 25 GLN n 1 26 ASN n 1 27 PRO n 1 28 ASP n 1 29 LEU n 1 30 HIS n 1 31 ASN n 1 32 ALA n 1 33 VAL n 1 34 LEU n 1 35 SER n 1 36 LYS n 1 37 MET n 1 38 LEU n 1 39 GLY n 1 40 LYS n 1 41 ALA n 1 42 TRP n 1 43 LYS n 1 44 GLU n 1 45 LEU n 1 46 ASN n 1 47 THR n 1 48 ALA n 1 49 GLU n 1 50 LYS n 1 51 ARG n 1 52 PRO n 1 53 PHE n 1 54 VAL n 1 55 GLU n 1 56 GLU n 1 57 ALA n 1 58 GLU n 1 59 ARG n 1 60 LEU n 1 61 ARG n 1 62 VAL n 1 63 GLN n 1 64 HIS n 1 65 LEU n 1 66 ARG n 1 67 ASP n 1 68 HIS n 1 69 PRO n 1 70 ASN n 1 71 TYR n 1 72 LYS n 1 73 TYR n 1 74 ARG n 1 75 PRO n 1 76 ARG n 1 77 ARG n 1 78 LYS n 1 79 LYS n 1 80 GLN n 2 1 DC n 2 2 DA n 2 3 DC n 2 4 DT n 2 5 DA n 2 6 DG n 2 7 DC n 2 8 DA n 2 9 DT n 2 10 DT n 2 11 DG n 2 12 DT n 2 13 DC n 2 14 DT n 2 15 DG n 2 16 DG n 2 17 DG n 3 1 DG n 3 2 DC n 3 3 DC n 3 4 DC n 3 5 DA n 3 6 DG n 3 7 DA n 3 8 DC n 3 9 DA n 3 10 DA n 3 11 DT n 3 12 DG n 3 13 DC n 3 14 DT n 3 15 DA n 3 16 DG n 3 17 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 80 _entity_src_gen.gene_src_common_name Mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Sox18, Sox-18' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 17 'Mus musculus' ? 10090 ? 3 1 sample 1 17 'Mus musculus' ? 10090 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY C . n A 1 2 LEU 2 1 1 LEU LEU C . n A 1 3 ARG 3 2 2 ARG ARG C . n A 1 4 ILE 4 3 3 ILE ILE C . n A 1 5 ARG 5 4 4 ARG ARG C . n A 1 6 ARG 6 5 5 ARG ARG C . n A 1 7 PRO 7 6 6 PRO PRO C . n A 1 8 MET 8 7 7 MET MET C . n A 1 9 ASN 9 8 8 ASN ASN C . n A 1 10 ALA 10 9 9 ALA ALA C . n A 1 11 PHE 11 10 10 PHE PHE C . n A 1 12 MET 12 11 11 MET MET C . n A 1 13 VAL 13 12 12 VAL VAL C . n A 1 14 TRP 14 13 13 TRP TRP C . n A 1 15 ALA 15 14 14 ALA ALA C . n A 1 16 LYS 16 15 15 LYS LYS C . n A 1 17 ASP 17 16 16 ASP ASP C . n A 1 18 GLU 18 17 17 GLU GLU C . n A 1 19 ARG 19 18 18 ARG ARG C . n A 1 20 LYS 20 19 19 LYS LYS C . n A 1 21 ARG 21 20 20 ARG ARG C . n A 1 22 LEU 22 21 21 LEU LEU C . n A 1 23 ALA 23 22 22 ALA ALA C . n A 1 24 GLN 24 23 23 GLN GLN C . n A 1 25 GLN 25 24 24 GLN GLN C . n A 1 26 ASN 26 25 25 ASN ASN C . n A 1 27 PRO 27 26 26 PRO PRO C . n A 1 28 ASP 28 27 27 ASP ASP C . n A 1 29 LEU 29 28 28 LEU LEU C . n A 1 30 HIS 30 29 29 HIS HIS C . n A 1 31 ASN 31 30 30 ASN ASN C . n A 1 32 ALA 32 31 31 ALA ALA C . n A 1 33 VAL 33 32 32 VAL VAL C . n A 1 34 LEU 34 33 33 LEU LEU C . n A 1 35 SER 35 34 34 SER SER C . n A 1 36 LYS 36 35 35 LYS LYS C . n A 1 37 MET 37 36 36 MET MET C . n A 1 38 LEU 38 37 37 LEU LEU C . n A 1 39 GLY 39 38 38 GLY GLY C . n A 1 40 LYS 40 39 39 LYS LYS C . n A 1 41 ALA 41 40 40 ALA ALA C . n A 1 42 TRP 42 41 41 TRP TRP C . n A 1 43 LYS 43 42 42 LYS LYS C . n A 1 44 GLU 44 43 43 GLU GLU C . n A 1 45 LEU 45 44 44 LEU LEU C . n A 1 46 ASN 46 45 45 ASN ASN C . n A 1 47 THR 47 46 46 THR THR C . n A 1 48 ALA 48 47 47 ALA ALA C . n A 1 49 GLU 49 48 48 GLU GLU C . n A 1 50 LYS 50 49 49 LYS LYS C . n A 1 51 ARG 51 50 50 ARG ARG C . n A 1 52 PRO 52 51 51 PRO PRO C . n A 1 53 PHE 53 52 52 PHE PHE C . n A 1 54 VAL 54 53 53 VAL VAL C . n A 1 55 GLU 55 54 54 GLU GLU C . n A 1 56 GLU 56 55 55 GLU GLU C . n A 1 57 ALA 57 56 56 ALA ALA C . n A 1 58 GLU 58 57 57 GLU GLU C . n A 1 59 ARG 59 58 58 ARG ARG C . n A 1 60 LEU 60 59 59 LEU LEU C . n A 1 61 ARG 61 60 60 ARG ARG C . n A 1 62 VAL 62 61 61 VAL VAL C . n A 1 63 GLN 63 62 62 GLN GLN C . n A 1 64 HIS 64 63 63 HIS HIS C . n A 1 65 LEU 65 64 64 LEU LEU C . n A 1 66 ARG 66 65 65 ARG ARG C . n A 1 67 ASP 67 66 66 ASP ASP C . n A 1 68 HIS 68 67 67 HIS HIS C . n A 1 69 PRO 69 68 68 PRO PRO C . n A 1 70 ASN 70 69 69 ASN ASN C . n A 1 71 TYR 71 70 70 TYR TYR C . n A 1 72 LYS 72 71 71 LYS LYS C . n A 1 73 TYR 73 72 72 TYR TYR C . n A 1 74 ARG 74 73 73 ARG ARG C . n A 1 75 PRO 75 74 74 PRO PRO C . n A 1 76 ARG 76 75 75 ARG ARG C . n A 1 77 ARG 77 76 ? ? ? C . n A 1 78 LYS 78 77 ? ? ? C . n A 1 79 LYS 79 78 ? ? ? C . n A 1 80 GLN 80 79 ? ? ? C . n B 2 1 DC 1 0 0 DC Cd A . n B 2 2 DA 2 1 1 DA Ad A . n B 2 3 DC 3 2 2 DC Cd A . n B 2 4 DT 4 3 3 DT Td A . n B 2 5 DA 5 4 4 DA Ad A . n B 2 6 DG 6 5 5 DG Gd A . n B 2 7 DC 7 6 6 DC Cd A . n B 2 8 DA 8 7 7 DA Ad A . n B 2 9 DT 9 8 8 DT Td A . n B 2 10 DT 10 9 9 DT Td A . n B 2 11 DG 11 10 10 DG Gd A . n B 2 12 DT 12 11 11 DT Td A . n B 2 13 DC 13 12 12 DC Cd A . n B 2 14 DT 14 13 13 DT Td A . n B 2 15 DG 15 14 14 DG Gd A . n B 2 16 DG 16 15 15 DG Gd A . n B 2 17 DG 17 16 16 DG Gd A . n C 3 1 DG 1 0 0 DG Gd B . n C 3 2 DC 2 1 1 DC Cd B . n C 3 3 DC 3 2 2 DC Cd B . n C 3 4 DC 4 3 3 DC Cd B . n C 3 5 DA 5 4 4 DA Ad B . n C 3 6 DG 6 5 5 DG Gd B . n C 3 7 DA 7 6 6 DA Ad B . n C 3 8 DC 8 7 7 DC Cd B . n C 3 9 DA 9 8 8 DA Ad B . n C 3 10 DA 10 9 9 DA Ad B . n C 3 11 DT 11 10 10 DT Td B . n C 3 12 DG 12 11 11 DG Gd B . n C 3 13 DC 13 12 12 DC Cd B . n C 3 14 DT 14 13 13 DT Td B . n C 3 15 DA 15 14 14 DA Ad B . n C 3 16 DG 16 15 15 DG Gd B . n C 3 17 DT 17 16 16 DT Td B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 101 40 HOH HOH C . D 4 HOH 2 102 139 HOH HOH C . D 4 HOH 3 103 88 HOH HOH C . D 4 HOH 4 104 110 HOH HOH C . D 4 HOH 5 105 62 HOH HOH C . D 4 HOH 6 106 173 HOH HOH C . D 4 HOH 7 107 48 HOH HOH C . D 4 HOH 8 108 172 HOH HOH C . D 4 HOH 9 109 44 HOH HOH C . D 4 HOH 10 110 90 HOH HOH C . D 4 HOH 11 111 12 HOH HOH C . D 4 HOH 12 112 127 HOH HOH C . D 4 HOH 13 113 129 HOH HOH C . D 4 HOH 14 114 6 HOH HOH C . D 4 HOH 15 115 73 HOH HOH C . D 4 HOH 16 116 140 HOH HOH C . D 4 HOH 17 117 20 HOH HOH C . D 4 HOH 18 118 27 HOH HOH C . D 4 HOH 19 119 143 HOH HOH C . D 4 HOH 20 120 41 HOH HOH C . D 4 HOH 21 121 74 HOH HOH C . D 4 HOH 22 122 106 HOH HOH C . D 4 HOH 23 123 145 HOH HOH C . D 4 HOH 24 124 181 HOH HOH C . D 4 HOH 25 125 96 HOH HOH C . D 4 HOH 26 126 95 HOH HOH C . D 4 HOH 27 127 52 HOH HOH C . D 4 HOH 28 128 7 HOH HOH C . D 4 HOH 29 129 45 HOH HOH C . D 4 HOH 30 130 177 HOH HOH C . D 4 HOH 31 131 19 HOH HOH C . D 4 HOH 32 132 170 HOH HOH C . D 4 HOH 33 133 13 HOH HOH C . D 4 HOH 34 134 76 HOH HOH C . D 4 HOH 35 135 22 HOH HOH C . D 4 HOH 36 136 130 HOH HOH C . D 4 HOH 37 137 51 HOH HOH C . D 4 HOH 38 138 79 HOH HOH C . D 4 HOH 39 139 115 HOH HOH C . D 4 HOH 40 140 142 HOH HOH C . D 4 HOH 41 141 144 HOH HOH C . D 4 HOH 42 142 8 HOH HOH C . D 4 HOH 43 143 67 HOH HOH C . D 4 HOH 44 144 123 HOH HOH C . D 4 HOH 45 145 125 HOH HOH C . D 4 HOH 46 146 182 HOH HOH C . D 4 HOH 47 147 180 HOH HOH C . D 4 HOH 48 148 164 HOH HOH C . D 4 HOH 49 149 34 HOH HOH C . D 4 HOH 50 150 77 HOH HOH C . D 4 HOH 51 151 141 HOH HOH C . D 4 HOH 52 152 189 HOH HOH C . D 4 HOH 53 153 133 HOH HOH C . D 4 HOH 54 154 99 HOH HOH C . D 4 HOH 55 155 207 HOH HOH C . D 4 HOH 56 156 183 HOH HOH C . D 4 HOH 57 157 190 HOH HOH C . D 4 HOH 58 158 101 HOH HOH C . D 4 HOH 59 159 29 HOH HOH C . D 4 HOH 60 160 167 HOH HOH C . D 4 HOH 61 161 114 HOH HOH C . D 4 HOH 62 162 163 HOH HOH C . D 4 HOH 63 163 3 HOH HOH C . D 4 HOH 64 164 4 HOH HOH C . D 4 HOH 65 165 5 HOH HOH C . D 4 HOH 66 166 10 HOH HOH C . D 4 HOH 67 167 11 HOH HOH C . D 4 HOH 68 168 14 HOH HOH C . D 4 HOH 69 169 16 HOH HOH C . D 4 HOH 70 170 17 HOH HOH C . D 4 HOH 71 171 23 HOH HOH C . D 4 HOH 72 172 25 HOH HOH C . D 4 HOH 73 173 28 HOH HOH C . D 4 HOH 74 174 31 HOH HOH C . D 4 HOH 75 175 35 HOH HOH C . D 4 HOH 76 176 37 HOH HOH C . D 4 HOH 77 177 38 HOH HOH C . D 4 HOH 78 178 42 HOH HOH C . D 4 HOH 79 179 47 HOH HOH C . D 4 HOH 80 180 49 HOH HOH C . D 4 HOH 81 181 50 HOH HOH C . D 4 HOH 82 182 55 HOH HOH C . D 4 HOH 83 183 57 HOH HOH C . D 4 HOH 84 184 58 HOH HOH C . D 4 HOH 85 185 59 HOH HOH C . D 4 HOH 86 186 60 HOH HOH C . D 4 HOH 87 187 61 HOH HOH C . D 4 HOH 88 188 64 HOH HOH C . D 4 HOH 89 189 66 HOH HOH C . D 4 HOH 90 190 75 HOH HOH C . D 4 HOH 91 191 78 HOH HOH C . D 4 HOH 92 192 80 HOH HOH C . D 4 HOH 93 193 82 HOH HOH C . D 4 HOH 94 194 83 HOH HOH C . D 4 HOH 95 195 89 HOH HOH C . D 4 HOH 96 196 92 HOH HOH C . D 4 HOH 97 197 93 HOH HOH C . D 4 HOH 98 198 98 HOH HOH C . D 4 HOH 99 199 100 HOH HOH C . D 4 HOH 100 200 108 HOH HOH C . D 4 HOH 101 201 116 HOH HOH C . D 4 HOH 102 202 122 HOH HOH C . D 4 HOH 103 203 124 HOH HOH C . D 4 HOH 104 204 135 HOH HOH C . D 4 HOH 105 205 138 HOH HOH C . D 4 HOH 106 206 148 HOH HOH C . D 4 HOH 107 207 149 HOH HOH C . D 4 HOH 108 208 150 HOH HOH C . D 4 HOH 109 209 153 HOH HOH C . D 4 HOH 110 210 175 HOH HOH C . D 4 HOH 111 211 185 HOH HOH C . D 4 HOH 112 212 193 HOH HOH C . D 4 HOH 113 213 201 HOH HOH C . D 4 HOH 114 214 204 HOH HOH C . D 4 HOH 115 215 205 HOH HOH C . E 4 HOH 1 101 112 HOH HOH A . E 4 HOH 2 102 54 HOH HOH A . E 4 HOH 3 103 211 HOH HOH A . E 4 HOH 4 104 171 HOH HOH A . E 4 HOH 5 105 174 HOH HOH A . E 4 HOH 6 106 216 HOH HOH A . E 4 HOH 7 107 2 HOH HOH A . E 4 HOH 8 108 9 HOH HOH A . E 4 HOH 9 109 15 HOH HOH A . E 4 HOH 10 110 18 HOH HOH A . E 4 HOH 11 111 26 HOH HOH A . E 4 HOH 12 112 36 HOH HOH A . E 4 HOH 13 113 56 HOH HOH A . E 4 HOH 14 114 63 HOH HOH A . E 4 HOH 15 115 71 HOH HOH A . E 4 HOH 16 116 81 HOH HOH A . E 4 HOH 17 117 84 HOH HOH A . E 4 HOH 18 118 85 HOH HOH A . E 4 HOH 19 119 86 HOH HOH A . E 4 HOH 20 120 87 HOH HOH A . E 4 HOH 21 121 102 HOH HOH A . E 4 HOH 22 122 105 HOH HOH A . E 4 HOH 23 123 113 HOH HOH A . E 4 HOH 24 124 118 HOH HOH A . E 4 HOH 25 125 126 HOH HOH A . E 4 HOH 26 126 136 HOH HOH A . E 4 HOH 27 127 147 HOH HOH A . E 4 HOH 28 128 154 HOH HOH A . E 4 HOH 29 129 155 HOH HOH A . E 4 HOH 30 130 169 HOH HOH A . E 4 HOH 31 131 179 HOH HOH A . E 4 HOH 32 132 186 HOH HOH A . E 4 HOH 33 133 187 HOH HOH A . E 4 HOH 34 134 191 HOH HOH A . E 4 HOH 35 135 192 HOH HOH A . E 4 HOH 36 136 195 HOH HOH A . E 4 HOH 37 137 199 HOH HOH A . E 4 HOH 38 138 200 HOH HOH A . F 4 HOH 1 101 69 HOH HOH B . F 4 HOH 2 102 152 HOH HOH B . F 4 HOH 3 103 121 HOH HOH B . F 4 HOH 4 104 39 HOH HOH B . F 4 HOH 5 105 196 HOH HOH B . F 4 HOH 6 106 30 HOH HOH B . F 4 HOH 7 107 212 HOH HOH B . F 4 HOH 8 108 109 HOH HOH B . F 4 HOH 9 109 43 HOH HOH B . F 4 HOH 10 110 94 HOH HOH B . F 4 HOH 11 111 128 HOH HOH B . F 4 HOH 12 112 161 HOH HOH B . F 4 HOH 13 113 206 HOH HOH B . F 4 HOH 14 114 111 HOH HOH B . F 4 HOH 15 115 21 HOH HOH B . F 4 HOH 16 116 151 HOH HOH B . F 4 HOH 17 117 70 HOH HOH B . F 4 HOH 18 118 117 HOH HOH B . F 4 HOH 19 119 158 HOH HOH B . F 4 HOH 20 120 202 HOH HOH B . F 4 HOH 21 121 120 HOH HOH B . F 4 HOH 22 122 33 HOH HOH B . F 4 HOH 23 123 1 HOH HOH B . F 4 HOH 24 124 24 HOH HOH B . F 4 HOH 25 125 32 HOH HOH B . F 4 HOH 26 126 46 HOH HOH B . F 4 HOH 27 127 53 HOH HOH B . F 4 HOH 28 128 65 HOH HOH B . F 4 HOH 29 129 68 HOH HOH B . F 4 HOH 30 130 72 HOH HOH B . F 4 HOH 31 131 103 HOH HOH B . F 4 HOH 32 132 104 HOH HOH B . F 4 HOH 33 133 119 HOH HOH B . F 4 HOH 34 134 131 HOH HOH B . F 4 HOH 35 135 146 HOH HOH B . F 4 HOH 36 136 156 HOH HOH B . F 4 HOH 37 137 160 HOH HOH B . F 4 HOH 38 138 176 HOH HOH B . F 4 HOH 39 139 178 HOH HOH B . F 4 HOH 40 140 184 HOH HOH B . F 4 HOH 41 141 197 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B DT 16 ? "C5'" ? C DT 17 "C5'" 2 1 Y 1 B DT 16 ? "C4'" ? C DT 17 "C4'" 3 1 Y 1 B DT 16 ? "O4'" ? C DT 17 "O4'" 4 1 Y 1 B DT 16 ? "C3'" ? C DT 17 "C3'" 5 1 Y 1 B DT 16 ? "O3'" ? C DT 17 "O3'" 6 1 Y 1 B DT 16 ? "C2'" ? C DT 17 "C2'" 7 1 Y 1 B DT 16 ? "C1'" ? C DT 17 "C1'" 8 1 Y 1 B DT 16 ? N1 ? C DT 17 N1 9 1 Y 1 B DT 16 ? C2 ? C DT 17 C2 10 1 Y 1 B DT 16 ? O2 ? C DT 17 O2 11 1 Y 1 B DT 16 ? N3 ? C DT 17 N3 12 1 Y 1 B DT 16 ? C4 ? C DT 17 C4 13 1 Y 1 B DT 16 ? O4 ? C DT 17 O4 14 1 Y 1 B DT 16 ? C5 ? C DT 17 C5 15 1 Y 1 B DT 16 ? C7 ? C DT 17 C7 16 1 Y 1 B DT 16 ? C6 ? C DT 17 C6 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(phenix.refine: 1.8_1069)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 5 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 4Y60 _cell.details ? _cell.formula_units_Z ? _cell.length_a 111.942 _cell.length_a_esd ? _cell.length_b 111.942 _cell.length_b_esd ? _cell.length_c 32.417 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y60 _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4Y60 _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.90 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 57.65 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M MMT buffer pH 5.0, 25% (w/v) PEG 1500' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 1' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-10-15 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.075 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.075 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_synchrotron_site NSLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4Y60 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.75 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 23871 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 24 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 19.94 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4Y60 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.75 _refine.ls_d_res_low 36.642 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 23869 _refine.ls_number_reflns_R_free 1222 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 100.00 _refine.ls_percent_reflns_R_free 5.12 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1750 _refine.ls_R_factor_R_free 0.1989 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1737 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 21.21 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.18 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 648 _refine_hist.pdbx_number_atoms_nucleic_acid 675 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 194 _refine_hist.number_atoms_total 1517 _refine_hist.d_res_high 1.75 _refine_hist.d_res_low 36.642 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 ? 1419 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.904 ? 2053 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 25.873 ? 593 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.163 ? 219 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 ? 150 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.7495 1.8195 . . 119 2516 100.00 . . . 0.2681 . 0.2263 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8195 1.9023 . . 145 2490 100.00 . . . 0.2381 . 0.2106 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9023 2.0026 . . 124 2481 100.00 . . . 0.2225 . 0.2070 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0026 2.1281 . . 155 2468 100.00 . . . 0.2303 . 0.2032 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1281 2.2924 . . 117 2530 100.00 . . . 0.2119 . 0.1911 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2924 2.5230 . . 134 2506 100.00 . . . 0.2318 . 0.1886 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5230 2.8880 . . 136 2509 100.00 . . . 0.2134 . 0.1978 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8880 3.6380 . . 137 2550 100.00 . . . 0.1751 . 0.1560 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6380 36.6496 . . 155 2597 100.00 . . . 0.1843 . 0.1550 . . . . . . . . . . # _struct.entry_id 4Y60 _struct.title 'Structure of SOX18-HMG/PROX1-DNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4Y60 _struct_keywords.text 'Transcription factor, SOX, protein-DNA, TRANSCRIPTION-DNA complex' _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SOX18_MOUSE P43680 ? 1 LRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNTAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQ 77 2 PDB 4Y60 4Y60 ? 2 ? 1 3 PDB 4Y60 4Y60 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4Y60 C 2 ? 80 ? P43680 77 ? 155 ? 1 79 2 2 4Y60 A 1 ? 17 ? 4Y60 0 ? 16 ? 0 16 3 3 4Y60 B 1 ? 17 ? 4Y60 0 ? 16 ? 0 16 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4Y60 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id C _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P43680 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4070 ? 1 MORE -17 ? 1 'SSA (A^2)' 10440 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 9 ? ASN A 26 ? ASN C 8 ASN C 25 1 ? 18 HELX_P HELX_P2 AA2 HIS A 30 ? LEU A 45 ? HIS C 29 LEU C 44 1 ? 16 HELX_P HELX_P3 AA3 ASN A 46 ? HIS A 68 ? ASN C 45 HIS C 67 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 16 N1 ? ? A DC 2 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 16 O6 ? ? A DC 2 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 16 N2 ? ? A DC 2 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 15 N1 ? ? A DT 3 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 15 N6 ? ? A DT 3 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DA 5 N1 ? ? ? 1_555 C DT 14 N3 ? ? A DA 4 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 5 N6 ? ? ? 1_555 C DT 14 O4 ? ? A DA 4 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 13 N3 ? ? A DG 5 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 13 O2 ? ? A DG 5 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 13 N4 ? ? A DG 5 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 7 N3 ? ? ? 1_555 C DG 12 N1 ? ? A DC 6 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 7 N4 ? ? ? 1_555 C DG 12 O6 ? ? A DC 6 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 7 O2 ? ? ? 1_555 C DG 12 N2 ? ? A DC 6 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 11 N3 ? ? A DA 7 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 11 O4 ? ? A DA 7 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 10 N1 ? ? A DT 8 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 10 N6 ? ? A DT 8 B DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 9 N1 ? ? A DT 9 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 9 N6 ? ? A DT 9 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 8 N3 ? ? A DG 10 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 8 O2 ? ? A DG 10 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 8 N4 ? ? A DG 10 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 7 N1 ? ? A DT 11 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 7 N6 ? ? A DT 11 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DC 13 N3 ? ? ? 1_555 C DG 6 N1 ? ? A DC 12 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DC 13 N4 ? ? ? 1_555 C DG 6 O6 ? ? A DC 12 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DC 13 O2 ? ? ? 1_555 C DG 6 N2 ? ? A DC 12 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DT 14 N3 ? ? ? 1_555 C DA 5 N1 ? ? A DT 13 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DT 14 O4 ? ? ? 1_555 C DA 5 N6 ? ? A DT 13 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DG 15 N1 ? ? ? 1_555 C DC 4 N3 ? ? A DG 14 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DG 15 N2 ? ? ? 1_555 C DC 4 O2 ? ? A DG 14 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DG 15 O6 ? ? ? 1_555 C DC 4 N4 ? ? A DG 14 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DG 16 N1 ? ? ? 1_555 C DC 3 N3 ? ? A DG 15 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DG 16 N2 ? ? ? 1_555 C DC 3 O2 ? ? A DG 15 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DG 16 O6 ? ? ? 1_555 C DC 3 N4 ? ? A DG 15 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DG 17 N1 ? ? ? 1_555 C DC 2 N3 ? ? A DG 16 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DG 17 N2 ? ? ? 1_555 C DC 2 O2 ? ? A DG 16 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B DG 17 O6 ? ? ? 1_555 C DC 2 N4 ? ? A DG 16 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NE2 C GLN 24 ? ? O C HOH 101 ? ? 2.18 2 1 O A HOH 127 ? ? O A HOH 128 ? ? 2.18 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 DC _pdbx_validate_rmsd_bond.auth_seq_id_1 12 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 DC _pdbx_validate_rmsd_bond.auth_seq_id_2 12 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.382 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.037 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 110.14 108.30 1.84 0.30 N 2 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.96 108.30 3.66 0.30 N 3 1 "O3'" A DC 2 ? ? P A DT 3 ? ? OP2 A DT 3 ? ? 79.83 105.20 -25.37 2.20 Y 4 1 "O3'" A DC 2 ? ? P A DT 3 ? ? OP1 A DT 3 ? ? 86.63 105.20 -18.57 2.20 Y 5 1 OP1 A DT 3 ? ? P A DT 3 ? ? OP2 A DT 3 ? ? 130.92 119.60 11.32 1.50 N 6 1 C5 A DT 8 ? ? C4 A DT 8 ? ? O4 A DT 8 ? ? 120.25 124.90 -4.65 0.70 N 7 1 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 103.24 108.00 -4.76 0.70 N 8 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 103.11 108.00 -4.89 0.70 N 9 1 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 103.61 108.00 -4.39 0.70 N 10 1 "O4'" B DG 0 ? ? "C1'" B DG 0 ? ? N9 B DG 0 ? ? 110.80 108.30 2.50 0.30 N 11 1 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 101.18 108.00 -6.82 0.70 N 12 1 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 103.46 108.00 -4.54 0.70 N 13 1 P B DG 5 ? ? "O5'" B DG 5 ? ? "C5'" B DG 5 ? ? 110.77 120.90 -10.13 1.60 N 14 1 "C1'" B DG 5 ? ? "O4'" B DG 5 ? ? "C4'" B DG 5 ? ? 102.81 110.10 -7.29 1.00 N 15 1 "O4'" B DG 5 ? ? "C1'" B DG 5 ? ? N9 B DG 5 ? ? 110.60 108.30 2.30 0.30 N 16 1 "C1'" B DT 10 ? ? "O4'" B DT 10 ? ? "C4'" B DT 10 ? ? 103.78 110.10 -6.32 1.00 N 17 1 "O4'" B DT 10 ? ? "C1'" B DT 10 ? ? N1 B DT 10 ? ? 103.28 108.00 -4.72 0.70 N 18 1 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? N1 B DT 13 ? ? 101.23 108.00 -6.77 0.70 N 19 1 "C1'" B DA 14 ? ? "O4'" B DA 14 ? ? "C4'" B DA 14 ? ? 104.03 110.10 -6.07 1.00 N 20 1 "C3'" B DA 14 ? ? "C2'" B DA 14 ? ? "C1'" B DA 14 ? ? 94.19 102.40 -8.21 0.80 N 21 1 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? N9 B DG 15 ? ? 110.63 108.30 2.33 0.30 N # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 43.7358 -53.5221 -8.5248 0.4115 ? -0.0241 ? 0.0020 ? 0.3670 ? -0.1016 ? 0.3283 ? 4.6007 ? 0.0689 ? -0.6156 ? 4.4914 ? 2.8899 ? 2.3345 ? -0.2635 ? 0.4416 ? -0.4959 ? -0.9103 ? 0.3855 ? 0.0618 ? 0.6430 ? 0.7896 ? -0.2376 ? 2 'X-RAY DIFFRACTION' ? refined 46.9666 -42.1701 0.7304 0.1882 ? -0.0052 ? -0.0196 ? 0.2425 ? -0.0268 ? 0.2280 ? 9.1318 ? 4.4591 ? 0.6810 ? 2.5151 ? -0.7067 ? 3.1869 ? 0.3050 ? -0.4019 ? -0.4001 ? 0.0141 ? -0.3935 ? -0.3529 ? 0.3090 ? -0.1205 ? 0.1021 ? 3 'X-RAY DIFFRACTION' ? refined 56.8974 -36.9179 -1.0854 0.3393 ? 0.0427 ? 0.0561 ? 0.2721 ? 0.0258 ? 0.3664 ? 2.2142 ? 1.6885 ? 1.3514 ? 7.4392 ? -1.6058 ? 8.4388 ? 0.5097 ? 0.2949 ? 0.7611 ? -0.2843 ? -0.5559 ? 0.0127 ? -0.8095 ? 0.0751 ? -0.0699 ? 4 'X-RAY DIFFRACTION' ? refined 63.4311 -41.6563 2.8042 0.2469 ? 0.0247 ? 0.0106 ? 0.3476 ? 0.0049 ? 0.3327 ? 7.0257 ? 6.7111 ? -1.9235 ? 6.5008 ? -2.3562 ? 7.0542 ? 0.0960 ? 0.0517 ? -0.3484 ? -0.1695 ? -0.1599 ? -0.4680 ? -0.0344 ? 0.5978 ? 0.0857 ? 5 'X-RAY DIFFRACTION' ? refined 52.3525 -41.1721 9.0612 0.2798 ? -0.0236 ? 0.0130 ? 0.2619 ? -0.0045 ? 0.2034 ? 9.6784 ? -5.1897 ? 0.7452 ? 7.0216 ? 1.0350 ? 3.5740 ? -0.3370 ? -0.7734 ? -0.2842 ? 0.7507 ? 0.1616 ? 0.0979 ? 0.1796 ? -0.0981 ? 0.1244 ? 6 'X-RAY DIFFRACTION' ? refined 43.8997 -32.7515 9.6205 0.2995 ? -0.0481 ? 0.0070 ? 0.3750 ? -0.1193 ? 0.3186 ? 4.5841 ? -3.7796 ? -1.2268 ? 4.5995 ? -1.1139 ? 3.3746 ? 0.0075 ? -1.2089 ? 0.9701 ? 0.7502 ? -0.1450 ? -0.3643 ? -0.2086 ? 0.2445 ? 0.2940 ? 7 'X-RAY DIFFRACTION' ? refined 35.5592 -43.4400 -4.3259 0.2425 ? -0.0131 ? -0.0408 ? 0.3491 ? -0.0289 ? 0.3366 ? 2.5298 ? 2.8219 ? 2.2177 ? 4.9143 ? 4.9613 ? 7.2477 ? -0.1401 ? 0.0190 ? 0.1294 ? -0.5558 ? -0.2929 ? 0.8470 ? -0.0681 ? -0.6314 ? 0.4715 ? 8 'X-RAY DIFFRACTION' ? refined 38.5565 -61.2848 -3.6421 0.6741 ? -0.1183 ? 0.0022 ? 0.4030 ? -0.0816 ? 0.5522 ? 6.6185 ? -6.8088 ? 5.3404 ? 7.5208 ? -6.1884 ? 5.2356 ? 0.8516 ? 0.4083 ? -2.1684 ? 0.0537 ? 0.4616 ? 1.0350 ? 1.7943 ? -0.1539 ? -1.3199 ? 9 'X-RAY DIFFRACTION' ? refined 64.4751 -60.3535 -13.5233 0.4543 ? 0.0963 ? -0.0581 ? 0.8875 ? 0.0524 ? 0.5164 ? 8.0968 ? -0.0921 ? -3.1980 ? 2.8489 ? -1.2059 ? 3.0672 ? -0.1480 ? 0.6880 ? 2.7291 ? -0.9215 ? 0.3211 ? 0.5219 ? 1.2278 ? -1.2954 ? -0.1537 ? 10 'X-RAY DIFFRACTION' ? refined 59.2438 -56.3979 1.8433 0.5297 ? 0.0476 ? 0.0921 ? 0.4597 ? 0.0400 ? 0.5072 ? 5.1386 ? -5.3261 ? -5.2443 ? 5.5731 ? 5.5853 ? 5.7754 ? -0.2769 ? 0.6582 ? -0.7013 ? 0.8720 ? -0.1012 ? -0.4736 ? 1.8328 ? -0.7257 ? 0.4447 ? 11 'X-RAY DIFFRACTION' ? refined 43.9990 -50.0072 6.4153 0.2170 ? -0.0486 ? 0.0343 ? 0.3093 ? -0.0182 ? 0.2497 ? 4.2634 ? 2.5825 ? -1.5629 ? 9.9443 ? 1.1750 ? 5.8445 ? 0.2893 ? -0.4281 ? -0.2635 ? 0.4140 ? -0.6385 ? 0.3521 ? 0.2495 ? -0.1770 ? 0.3029 ? 12 'X-RAY DIFFRACTION' ? refined 36.0281 -66.0708 7.8025 0.6065 ? -0.1384 ? 0.1240 ? 0.4839 ? -0.0115 ? 0.4939 ? 5.1106 ? 1.9826 ? -3.2205 ? 5.5875 ? -5.7615 ? 6.7929 ? -0.5192 ? -0.0466 ? -0.6770 ? -1.1497 ? 0.4597 ? 0.6068 ? 1.9723 ? 0.3210 ? -0.0972 ? 13 'X-RAY DIFFRACTION' ? refined 33.2235 -60.7392 14.9938 0.4052 ? -0.0506 ? 0.0904 ? 0.5641 ? 0.0219 ? 0.4951 ? 7.7633 ? 1.0531 ? -2.2499 ? 3.9534 ? 3.1368 ? 3.8142 ? -1.0377 ? 0.1136 ? 0.0159 ? -0.7557 ? 0.6458 ? 0.0217 ? 0.0992 ? 0.5757 ? 0.3262 ? 14 'X-RAY DIFFRACTION' ? refined 45.7169 -60.2586 6.7221 0.3088 ? 0.0431 ? 0.0744 ? 0.3916 ? 0.0259 ? 0.4010 ? 7.7431 ? 2.3717 ? -5.9992 ? 2.9687 ? -2.2969 ? 4.7086 ? -0.2031 ? -0.9018 ? 0.1204 ? 0.1308 ? -0.0470 ? 0.2031 ? 0.6969 ? 1.2059 ? 0.2998 ? 15 'X-RAY DIFFRACTION' ? refined 52.7785 -49.0363 -3.8176 0.2374 ? -0.0026 ? 0.0278 ? 0.3108 ? 0.0232 ? 0.2355 ? 2.0662 ? -0.2185 ? 1.7407 ? 2.6208 ? 0.8060 ? 2.7175 ? 0.0831 ? 1.0614 ? -0.0988 ? -0.3591 ? -0.0525 ? -0.1211 ? 0.3308 ? 0.2819 ? -0.1071 ? 16 'X-RAY DIFFRACTION' ? refined 67.6150 -55.1307 -3.2853 0.3064 ? 0.1736 ? 0.0077 ? 0.5094 ? -0.0121 ? 0.4579 ? 3.1310 ? -3.0011 ? 1.2684 ? 4.7905 ? 0.7676 ? 2.5867 ? 0.0635 ? 0.7850 ? 0.0299 ? 0.9881 ? 0.0161 ? -1.0556 ? 0.5412 ? 0.6418 ? -0.3077 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? '(chain C and resid 0:7)' 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? '(chain C and resid 8:15)' 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? '(chain C and resid 16:23)' 4 'X-RAY DIFFRACTION' 4 ? ? ? ? ? ? ? ? ? '(chain C and resid 24:33)' 5 'X-RAY DIFFRACTION' 5 ? ? ? ? ? ? ? ? ? '(chain C and resid 34:42)' 6 'X-RAY DIFFRACTION' 6 ? ? ? ? ? ? ? ? ? '(chain C and resid 43:48)' 7 'X-RAY DIFFRACTION' 7 ? ? ? ? ? ? ? ? ? '(chain C and resid 49:68)' 8 'X-RAY DIFFRACTION' 8 ? ? ? ? ? ? ? ? ? '(chain C and resid 69:75)' 9 'X-RAY DIFFRACTION' 9 ? ? ? ? ? ? ? ? ? '(chain A and resid 0:3)' 10 'X-RAY DIFFRACTION' 10 ? ? ? ? ? ? ? ? ? '(chain A and resid 4:7)' 11 'X-RAY DIFFRACTION' 11 ? ? ? ? ? ? ? ? ? '(chain A and resid 8:12)' 12 'X-RAY DIFFRACTION' 12 ? ? ? ? ? ? ? ? ? '(chain A and resid 13:16)' 13 'X-RAY DIFFRACTION' 13 ? ? ? ? ? ? ? ? ? '(chain B and resid 0:3)' 14 'X-RAY DIFFRACTION' 14 ? ? ? ? ? ? ? ? ? '(chain B and resid 4:7)' 15 'X-RAY DIFFRACTION' 15 ? ? ? ? ? ? ? ? ? '(chain B and resid 8:11)' 16 'X-RAY DIFFRACTION' 16 ? ? ? ? ? ? ? ? ? '(chain B and resid 12:15)' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C ARG 76 ? A ARG 77 2 1 Y 1 C LYS 77 ? A LYS 78 3 1 Y 1 C LYS 78 ? A LYS 79 4 1 Y 1 C GLN 79 ? A GLN 80 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HIS N N N N 266 HIS CA C N S 267 HIS C C N N 268 HIS O O N N 269 HIS CB C N N 270 HIS CG C Y N 271 HIS ND1 N Y N 272 HIS CD2 C Y N 273 HIS CE1 C Y N 274 HIS NE2 N Y N 275 HIS OXT O N N 276 HIS H H N N 277 HIS H2 H N N 278 HIS HA H N N 279 HIS HB2 H N N 280 HIS HB3 H N N 281 HIS HD1 H N N 282 HIS HD2 H N N 283 HIS HE1 H N N 284 HIS HE2 H N N 285 HIS HXT H N N 286 HOH O O N N 287 HOH H1 H N N 288 HOH H2 H N N 289 ILE N N N N 290 ILE CA C N S 291 ILE C C N N 292 ILE O O N N 293 ILE CB C N S 294 ILE CG1 C N N 295 ILE CG2 C N N 296 ILE CD1 C N N 297 ILE OXT O N N 298 ILE H H N N 299 ILE H2 H N N 300 ILE HA H N N 301 ILE HB H N N 302 ILE HG12 H N N 303 ILE HG13 H N N 304 ILE HG21 H N N 305 ILE HG22 H N N 306 ILE HG23 H N N 307 ILE HD11 H N N 308 ILE HD12 H N N 309 ILE HD13 H N N 310 ILE HXT H N N 311 LEU N N N N 312 LEU CA C N S 313 LEU C C N N 314 LEU O O N N 315 LEU CB C N N 316 LEU CG C N N 317 LEU CD1 C N N 318 LEU CD2 C N N 319 LEU OXT O N N 320 LEU H H N N 321 LEU H2 H N N 322 LEU HA H N N 323 LEU HB2 H N N 324 LEU HB3 H N N 325 LEU HG H N N 326 LEU HD11 H N N 327 LEU HD12 H N N 328 LEU HD13 H N N 329 LEU HD21 H N N 330 LEU HD22 H N N 331 LEU HD23 H N N 332 LEU HXT H N N 333 LYS N N N N 334 LYS CA C N S 335 LYS C C N N 336 LYS O O N N 337 LYS CB C N N 338 LYS CG C N N 339 LYS CD C N N 340 LYS CE C N N 341 LYS NZ N N N 342 LYS OXT O N N 343 LYS H H N N 344 LYS H2 H N N 345 LYS HA H N N 346 LYS HB2 H N N 347 LYS HB3 H N N 348 LYS HG2 H N N 349 LYS HG3 H N N 350 LYS HD2 H N N 351 LYS HD3 H N N 352 LYS HE2 H N N 353 LYS HE3 H N N 354 LYS HZ1 H N N 355 LYS HZ2 H N N 356 LYS HZ3 H N N 357 LYS HXT H N N 358 MET N N N N 359 MET CA C N S 360 MET C C N N 361 MET O O N N 362 MET CB C N N 363 MET CG C N N 364 MET SD S N N 365 MET CE C N N 366 MET OXT O N N 367 MET H H N N 368 MET H2 H N N 369 MET HA H N N 370 MET HB2 H N N 371 MET HB3 H N N 372 MET HG2 H N N 373 MET HG3 H N N 374 MET HE1 H N N 375 MET HE2 H N N 376 MET HE3 H N N 377 MET HXT H N N 378 PHE N N N N 379 PHE CA C N S 380 PHE C C N N 381 PHE O O N N 382 PHE CB C N N 383 PHE CG C Y N 384 PHE CD1 C Y N 385 PHE CD2 C Y N 386 PHE CE1 C Y N 387 PHE CE2 C Y N 388 PHE CZ C Y N 389 PHE OXT O N N 390 PHE H H N N 391 PHE H2 H N N 392 PHE HA H N N 393 PHE HB2 H N N 394 PHE HB3 H N N 395 PHE HD1 H N N 396 PHE HD2 H N N 397 PHE HE1 H N N 398 PHE HE2 H N N 399 PHE HZ H N N 400 PHE HXT H N N 401 PRO N N N N 402 PRO CA C N S 403 PRO C C N N 404 PRO O O N N 405 PRO CB C N N 406 PRO CG C N N 407 PRO CD C N N 408 PRO OXT O N N 409 PRO H H N N 410 PRO HA H N N 411 PRO HB2 H N N 412 PRO HB3 H N N 413 PRO HG2 H N N 414 PRO HG3 H N N 415 PRO HD2 H N N 416 PRO HD3 H N N 417 PRO HXT H N N 418 SER N N N N 419 SER CA C N S 420 SER C C N N 421 SER O O N N 422 SER CB C N N 423 SER OG O N N 424 SER OXT O N N 425 SER H H N N 426 SER H2 H N N 427 SER HA H N N 428 SER HB2 H N N 429 SER HB3 H N N 430 SER HG H N N 431 SER HXT H N N 432 THR N N N N 433 THR CA C N S 434 THR C C N N 435 THR O O N N 436 THR CB C N R 437 THR OG1 O N N 438 THR CG2 C N N 439 THR OXT O N N 440 THR H H N N 441 THR H2 H N N 442 THR HA H N N 443 THR HB H N N 444 THR HG1 H N N 445 THR HG21 H N N 446 THR HG22 H N N 447 THR HG23 H N N 448 THR HXT H N N 449 TRP N N N N 450 TRP CA C N S 451 TRP C C N N 452 TRP O O N N 453 TRP CB C N N 454 TRP CG C Y N 455 TRP CD1 C Y N 456 TRP CD2 C Y N 457 TRP NE1 N Y N 458 TRP CE2 C Y N 459 TRP CE3 C Y N 460 TRP CZ2 C Y N 461 TRP CZ3 C Y N 462 TRP CH2 C Y N 463 TRP OXT O N N 464 TRP H H N N 465 TRP H2 H N N 466 TRP HA H N N 467 TRP HB2 H N N 468 TRP HB3 H N N 469 TRP HD1 H N N 470 TRP HE1 H N N 471 TRP HE3 H N N 472 TRP HZ2 H N N 473 TRP HZ3 H N N 474 TRP HH2 H N N 475 TRP HXT H N N 476 TYR N N N N 477 TYR CA C N S 478 TYR C C N N 479 TYR O O N N 480 TYR CB C N N 481 TYR CG C Y N 482 TYR CD1 C Y N 483 TYR CD2 C Y N 484 TYR CE1 C Y N 485 TYR CE2 C Y N 486 TYR CZ C Y N 487 TYR OH O N N 488 TYR OXT O N N 489 TYR H H N N 490 TYR H2 H N N 491 TYR HA H N N 492 TYR HB2 H N N 493 TYR HB3 H N N 494 TYR HD1 H N N 495 TYR HD2 H N N 496 TYR HE1 H N N 497 TYR HE2 H N N 498 TYR HH H N N 499 TYR HXT H N N 500 VAL N N N N 501 VAL CA C N S 502 VAL C C N N 503 VAL O O N N 504 VAL CB C N N 505 VAL CG1 C N N 506 VAL CG2 C N N 507 VAL OXT O N N 508 VAL H H N N 509 VAL H2 H N N 510 VAL HA H N N 511 VAL HB H N N 512 VAL HG11 H N N 513 VAL HG12 H N N 514 VAL HG13 H N N 515 VAL HG21 H N N 516 VAL HG22 H N N 517 VAL HG23 H N N 518 VAL HXT H N N 519 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 HOH O H1 sing N N 286 HOH O H2 sing N N 287 ILE N CA sing N N 288 ILE N H sing N N 289 ILE N H2 sing N N 290 ILE CA C sing N N 291 ILE CA CB sing N N 292 ILE CA HA sing N N 293 ILE C O doub N N 294 ILE C OXT sing N N 295 ILE CB CG1 sing N N 296 ILE CB CG2 sing N N 297 ILE CB HB sing N N 298 ILE CG1 CD1 sing N N 299 ILE CG1 HG12 sing N N 300 ILE CG1 HG13 sing N N 301 ILE CG2 HG21 sing N N 302 ILE CG2 HG22 sing N N 303 ILE CG2 HG23 sing N N 304 ILE CD1 HD11 sing N N 305 ILE CD1 HD12 sing N N 306 ILE CD1 HD13 sing N N 307 ILE OXT HXT sing N N 308 LEU N CA sing N N 309 LEU N H sing N N 310 LEU N H2 sing N N 311 LEU CA C sing N N 312 LEU CA CB sing N N 313 LEU CA HA sing N N 314 LEU C O doub N N 315 LEU C OXT sing N N 316 LEU CB CG sing N N 317 LEU CB HB2 sing N N 318 LEU CB HB3 sing N N 319 LEU CG CD1 sing N N 320 LEU CG CD2 sing N N 321 LEU CG HG sing N N 322 LEU CD1 HD11 sing N N 323 LEU CD1 HD12 sing N N 324 LEU CD1 HD13 sing N N 325 LEU CD2 HD21 sing N N 326 LEU CD2 HD22 sing N N 327 LEU CD2 HD23 sing N N 328 LEU OXT HXT sing N N 329 LYS N CA sing N N 330 LYS N H sing N N 331 LYS N H2 sing N N 332 LYS CA C sing N N 333 LYS CA CB sing N N 334 LYS CA HA sing N N 335 LYS C O doub N N 336 LYS C OXT sing N N 337 LYS CB CG sing N N 338 LYS CB HB2 sing N N 339 LYS CB HB3 sing N N 340 LYS CG CD sing N N 341 LYS CG HG2 sing N N 342 LYS CG HG3 sing N N 343 LYS CD CE sing N N 344 LYS CD HD2 sing N N 345 LYS CD HD3 sing N N 346 LYS CE NZ sing N N 347 LYS CE HE2 sing N N 348 LYS CE HE3 sing N N 349 LYS NZ HZ1 sing N N 350 LYS NZ HZ2 sing N N 351 LYS NZ HZ3 sing N N 352 LYS OXT HXT sing N N 353 MET N CA sing N N 354 MET N H sing N N 355 MET N H2 sing N N 356 MET CA C sing N N 357 MET CA CB sing N N 358 MET CA HA sing N N 359 MET C O doub N N 360 MET C OXT sing N N 361 MET CB CG sing N N 362 MET CB HB2 sing N N 363 MET CB HB3 sing N N 364 MET CG SD sing N N 365 MET CG HG2 sing N N 366 MET CG HG3 sing N N 367 MET SD CE sing N N 368 MET CE HE1 sing N N 369 MET CE HE2 sing N N 370 MET CE HE3 sing N N 371 MET OXT HXT sing N N 372 PHE N CA sing N N 373 PHE N H sing N N 374 PHE N H2 sing N N 375 PHE CA C sing N N 376 PHE CA CB sing N N 377 PHE CA HA sing N N 378 PHE C O doub N N 379 PHE C OXT sing N N 380 PHE CB CG sing N N 381 PHE CB HB2 sing N N 382 PHE CB HB3 sing N N 383 PHE CG CD1 doub Y N 384 PHE CG CD2 sing Y N 385 PHE CD1 CE1 sing Y N 386 PHE CD1 HD1 sing N N 387 PHE CD2 CE2 doub Y N 388 PHE CD2 HD2 sing N N 389 PHE CE1 CZ doub Y N 390 PHE CE1 HE1 sing N N 391 PHE CE2 CZ sing Y N 392 PHE CE2 HE2 sing N N 393 PHE CZ HZ sing N N 394 PHE OXT HXT sing N N 395 PRO N CA sing N N 396 PRO N CD sing N N 397 PRO N H sing N N 398 PRO CA C sing N N 399 PRO CA CB sing N N 400 PRO CA HA sing N N 401 PRO C O doub N N 402 PRO C OXT sing N N 403 PRO CB CG sing N N 404 PRO CB HB2 sing N N 405 PRO CB HB3 sing N N 406 PRO CG CD sing N N 407 PRO CG HG2 sing N N 408 PRO CG HG3 sing N N 409 PRO CD HD2 sing N N 410 PRO CD HD3 sing N N 411 PRO OXT HXT sing N N 412 SER N CA sing N N 413 SER N H sing N N 414 SER N H2 sing N N 415 SER CA C sing N N 416 SER CA CB sing N N 417 SER CA HA sing N N 418 SER C O doub N N 419 SER C OXT sing N N 420 SER CB OG sing N N 421 SER CB HB2 sing N N 422 SER CB HB3 sing N N 423 SER OG HG sing N N 424 SER OXT HXT sing N N 425 THR N CA sing N N 426 THR N H sing N N 427 THR N H2 sing N N 428 THR CA C sing N N 429 THR CA CB sing N N 430 THR CA HA sing N N 431 THR C O doub N N 432 THR C OXT sing N N 433 THR CB OG1 sing N N 434 THR CB CG2 sing N N 435 THR CB HB sing N N 436 THR OG1 HG1 sing N N 437 THR CG2 HG21 sing N N 438 THR CG2 HG22 sing N N 439 THR CG2 HG23 sing N N 440 THR OXT HXT sing N N 441 TRP N CA sing N N 442 TRP N H sing N N 443 TRP N H2 sing N N 444 TRP CA C sing N N 445 TRP CA CB sing N N 446 TRP CA HA sing N N 447 TRP C O doub N N 448 TRP C OXT sing N N 449 TRP CB CG sing N N 450 TRP CB HB2 sing N N 451 TRP CB HB3 sing N N 452 TRP CG CD1 doub Y N 453 TRP CG CD2 sing Y N 454 TRP CD1 NE1 sing Y N 455 TRP CD1 HD1 sing N N 456 TRP CD2 CE2 doub Y N 457 TRP CD2 CE3 sing Y N 458 TRP NE1 CE2 sing Y N 459 TRP NE1 HE1 sing N N 460 TRP CE2 CZ2 sing Y N 461 TRP CE3 CZ3 doub Y N 462 TRP CE3 HE3 sing N N 463 TRP CZ2 CH2 doub Y N 464 TRP CZ2 HZ2 sing N N 465 TRP CZ3 CH2 sing Y N 466 TRP CZ3 HZ3 sing N N 467 TRP CH2 HH2 sing N N 468 TRP OXT HXT sing N N 469 TYR N CA sing N N 470 TYR N H sing N N 471 TYR N H2 sing N N 472 TYR CA C sing N N 473 TYR CA CB sing N N 474 TYR CA HA sing N N 475 TYR C O doub N N 476 TYR C OXT sing N N 477 TYR CB CG sing N N 478 TYR CB HB2 sing N N 479 TYR CB HB3 sing N N 480 TYR CG CD1 doub Y N 481 TYR CG CD2 sing Y N 482 TYR CD1 CE1 sing Y N 483 TYR CD1 HD1 sing N N 484 TYR CD2 CE2 doub Y N 485 TYR CD2 HD2 sing N N 486 TYR CE1 CZ doub Y N 487 TYR CE1 HE1 sing N N 488 TYR CE2 CZ sing Y N 489 TYR CE2 HE2 sing N N 490 TYR CZ OH sing N N 491 TYR OH HH sing N N 492 TYR OXT HXT sing N N 493 VAL N CA sing N N 494 VAL N H sing N N 495 VAL N H2 sing N N 496 VAL CA C sing N N 497 VAL CA CB sing N N 498 VAL CA HA sing N N 499 VAL C O doub N N 500 VAL C OXT sing N N 501 VAL CB CG1 sing N N 502 VAL CB CG2 sing N N 503 VAL CB HB sing N N 504 VAL CG1 HG11 sing N N 505 VAL CG1 HG12 sing N N 506 VAL CG1 HG13 sing N N 507 VAL CG2 HG21 sing N N 508 VAL CG2 HG22 sing N N 509 VAL CG2 HG23 sing N N 510 VAL OXT HXT sing N N 511 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4Y60 'double helix' 4Y60 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 3 1_555 C DG 16 1_555 0.240 -0.184 -0.152 0.669 -11.720 1.694 1 A_DC2:DG15_B A 2 ? B 15 ? 19 1 1 B DT 4 1_555 C DA 15 1_555 0.458 -0.554 -0.126 -0.747 -9.295 -4.598 2 A_DT3:DA14_B A 3 ? B 14 ? 20 1 1 B DA 5 1_555 C DT 14 1_555 -0.071 -0.292 -0.136 1.967 -10.114 2.719 3 A_DA4:DT13_B A 4 ? B 13 ? 20 1 1 B DG 6 1_555 C DC 13 1_555 -0.191 -0.117 0.010 -4.524 -11.880 0.268 4 A_DG5:DC12_B A 5 ? B 12 ? 19 1 1 B DC 7 1_555 C DG 12 1_555 0.064 -0.185 -0.306 4.516 6.763 -1.595 5 A_DC6:DG11_B A 6 ? B 11 ? 19 1 1 B DA 8 1_555 C DT 11 1_555 0.153 -0.039 0.044 8.973 5.196 4.505 6 A_DA7:DT10_B A 7 ? B 10 ? 20 1 1 B DT 9 1_555 C DA 10 1_555 -0.338 0.024 -0.056 27.283 17.353 -1.831 7 A_DT8:DA9_B A 8 ? B 9 ? 20 1 1 B DT 10 1_555 C DA 9 1_555 -0.052 -0.115 0.210 -11.974 -13.954 4.651 8 A_DT9:DA8_B A 9 ? B 8 ? 20 1 1 B DG 11 1_555 C DC 8 1_555 -0.012 -0.021 -0.078 -10.686 -4.446 -1.229 9 A_DG10:DC7_B A 10 ? B 7 ? 19 1 1 B DT 12 1_555 C DA 7 1_555 -0.126 -0.149 0.002 -4.316 -11.673 1.333 10 A_DT11:DA6_B A 11 ? B 6 ? 20 1 1 B DC 13 1_555 C DG 6 1_555 0.184 -0.276 -0.008 -0.321 -12.857 0.208 11 A_DC12:DG5_B A 12 ? B 5 ? 19 1 1 B DT 14 1_555 C DA 5 1_555 -0.069 -0.223 0.055 0.305 -12.506 1.956 12 A_DT13:DA4_B A 13 ? B 4 ? 20 1 1 B DG 15 1_555 C DC 4 1_555 -0.110 -0.217 0.359 12.948 -8.702 2.382 13 A_DG14:DC3_B A 14 ? B 3 ? 19 1 1 B DG 16 1_555 C DC 3 1_555 0.021 -0.121 0.682 14.040 -12.904 2.106 14 A_DG15:DC2_B A 15 ? B 2 ? 19 1 1 B DG 17 1_555 C DC 2 1_555 -0.433 -0.148 0.048 -6.727 -20.586 1.300 15 A_DG16:DC1_B A 16 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 3 1_555 C DG 16 1_555 B DT 4 1_555 C DA 15 1_555 0.039 -0.430 3.435 3.706 5.083 36.501 -1.389 0.457 3.336 8.041 -5.863 37.021 1 AA_DC2DT3:DA14DG15_BB A 2 ? B 15 ? A 3 ? B 14 ? 1 B DT 4 1_555 C DA 15 1_555 B DA 5 1_555 C DT 14 1_555 -0.385 0.153 3.402 -0.651 8.212 27.931 -1.583 0.616 3.319 16.562 1.313 29.097 2 AA_DT3DA4:DT13DA14_BB A 3 ? B 14 ? A 4 ? B 13 ? 1 B DA 5 1_555 C DT 14 1_555 B DG 6 1_555 C DC 13 1_555 0.058 -0.539 3.511 -3.020 6.293 33.867 -1.936 -0.593 3.342 10.663 5.117 34.558 3 AA_DA4DG5:DC12DT13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 B DG 6 1_555 C DC 13 1_555 B DC 7 1_555 C DG 12 1_555 0.412 0.267 3.201 3.054 2.015 33.735 0.139 -0.223 3.235 3.460 -5.243 33.927 4 AA_DG5DC6:DG11DC12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 B DC 7 1_555 C DG 12 1_555 B DA 8 1_555 C DT 11 1_555 0.103 1.406 3.702 -0.358 23.877 15.159 -4.823 -0.326 3.184 58.038 0.870 28.226 5 AA_DC6DA7:DT10DG11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 B DA 8 1_555 C DT 11 1_555 B DT 9 1_555 C DA 10 1_555 -0.233 0.029 3.258 1.541 10.289 18.151 -4.302 1.298 2.831 29.662 -4.443 20.899 6 AA_DA7DT8:DA9DT10_BB A 7 ? B 10 ? A 8 ? B 9 ? 1 B DT 9 1_555 C DA 10 1_555 B DT 10 1_555 C DA 9 1_555 0.014 1.109 5.597 0.666 53.112 29.144 -4.276 0.053 3.772 63.277 -0.794 60.073 7 AA_DT8DT9:DA8DA9_BB A 8 ? B 9 ? A 9 ? B 8 ? 1 B DT 10 1_555 C DA 9 1_555 B DG 11 1_555 C DC 8 1_555 0.181 0.550 3.250 1.344 3.654 34.019 0.357 -0.095 3.294 6.220 -2.288 34.234 8 AA_DT9DG10:DC7DA8_BB A 9 ? B 8 ? A 10 ? B 7 ? 1 B DG 11 1_555 C DC 8 1_555 B DT 12 1_555 C DA 7 1_555 -0.332 -0.214 3.235 -1.762 6.765 28.910 -1.816 0.283 3.120 13.306 3.466 29.726 9 AA_DG10DT11:DA6DC7_BB A 10 ? B 7 ? A 11 ? B 6 ? 1 B DT 12 1_555 C DA 7 1_555 B DC 13 1_555 C DG 6 1_555 0.784 -0.080 3.139 0.559 1.326 39.968 -0.264 -1.085 3.145 1.939 -0.818 39.993 10 AA_DT11DC12:DG5DA6_BB A 11 ? B 6 ? A 12 ? B 5 ? 1 B DC 13 1_555 C DG 6 1_555 B DT 14 1_555 C DA 5 1_555 -0.830 -0.309 3.394 0.564 3.890 28.467 -1.523 1.804 3.307 7.863 -1.140 28.732 11 AA_DC12DT13:DA4DG5_BB A 12 ? B 5 ? A 13 ? B 4 ? 1 B DT 14 1_555 C DA 5 1_555 B DG 15 1_555 C DC 4 1_555 -0.410 0.902 3.116 -1.269 11.334 29.985 -0.423 0.513 3.249 20.976 2.348 32.034 12 AA_DT13DG14:DC3DA4_BB A 13 ? B 4 ? A 14 ? B 3 ? 1 B DG 15 1_555 C DC 4 1_555 B DG 16 1_555 C DC 3 1_555 0.315 -0.011 3.275 -1.001 4.868 32.006 -0.878 -0.741 3.227 8.762 1.802 32.380 13 AA_DG14DG15:DC2DC3_BB A 14 ? B 3 ? A 15 ? B 2 ? 1 B DG 16 1_555 C DC 3 1_555 B DG 17 1_555 C DC 2 1_555 -0.021 -0.656 3.653 5.723 6.750 39.856 -1.761 0.725 3.466 9.757 -8.272 40.788 14 AA_DG15DG16:DC1DC2_BB A 15 ? B 2 ? A 16 ? B 1 ? # _atom_sites.entry_id 4Y60 _atom_sites.fract_transf_matrix[1][1] 0.008933 _atom_sites.fract_transf_matrix[1][2] 0.005158 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010315 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030848 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_