HEADER TRANSCRIPTION/DNA 12-FEB-15 4Y60 TITLE STRUCTURE OF SOX18-HMG/PROX1-DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR SOX-18; COMPND 3 CHAIN: C; COMPND 4 FRAGMENT: UNP RESIDUES 77-155; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*CP*AP*CP*TP*AP*GP*CP*AP*TP*TP*GP*TP*CP*TP*GP*GP*G)-3'); COMPND 9 CHAIN: A; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'- COMPND 13 D(*GP*CP*CP*CP*AP*GP*AP*CP*AP*AP*TP*GP*CP*TP*AP*GP*T)-3'); COMPND 14 CHAIN: B; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SOX18, SOX-18; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 15 ORGANISM_TAXID: 10090 KEYWDS TRANSCRIPTION FACTOR, SOX, PROTEIN-DNA, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.NARASIMHAN,N.PROKOPH,P.KOLATKAR,H.ROBINSON,R.JAUCH REVDAT 3 20-MAR-24 4Y60 1 JRNL REMARK REVDAT 2 06-APR-16 4Y60 1 JRNL REVDAT 1 02-MAR-16 4Y60 0 JRNL AUTH M.KLAUS,N.PROKOPH,M.GIRBIG,X.WANG,Y.H.HUANG,Y.SRIVASTAVA, JRNL AUTH 2 L.HOU,K.NARASIMHAN,P.R.KOLATKAR,M.FRANCOIS,R.JAUCH JRNL TITL STRUCTURE AND DECOY-MEDIATED INHIBITION OF THE JRNL TITL 2 SOX18/PROX1-DNA INTERACTION. JRNL REF NUCLEIC ACIDS RES. V. 44 3922 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 26939885 JRNL DOI 10.1093/NAR/GKW130 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 23869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1222 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.6496 - 3.6380 1.00 2597 155 0.1550 0.1843 REMARK 3 2 3.6380 - 2.8880 1.00 2550 137 0.1560 0.1751 REMARK 3 3 2.8880 - 2.5230 1.00 2509 136 0.1978 0.2134 REMARK 3 4 2.5230 - 2.2924 1.00 2506 134 0.1886 0.2318 REMARK 3 5 2.2924 - 2.1281 1.00 2530 117 0.1911 0.2119 REMARK 3 6 2.1281 - 2.0026 1.00 2468 155 0.2032 0.2303 REMARK 3 7 2.0026 - 1.9023 1.00 2481 124 0.2070 0.2225 REMARK 3 8 1.9023 - 1.8195 1.00 2490 145 0.2106 0.2381 REMARK 3 9 1.8195 - 1.7495 1.00 2516 119 0.2263 0.2681 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1419 REMARK 3 ANGLE : 1.904 2053 REMARK 3 CHIRALITY : 0.163 219 REMARK 3 PLANARITY : 0.007 150 REMARK 3 DIHEDRAL : 25.873 593 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN C AND RESID 0:7) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7358 -53.5221 -8.5248 REMARK 3 T TENSOR REMARK 3 T11: 0.4115 T22: 0.3670 REMARK 3 T33: 0.3283 T12: -0.0241 REMARK 3 T13: 0.0020 T23: -0.1016 REMARK 3 L TENSOR REMARK 3 L11: 4.6007 L22: 4.4914 REMARK 3 L33: 2.3345 L12: 0.0689 REMARK 3 L13: -0.6156 L23: 2.8899 REMARK 3 S TENSOR REMARK 3 S11: -0.2635 S12: 0.4416 S13: -0.4959 REMARK 3 S21: -0.9103 S22: 0.3855 S23: 0.0618 REMARK 3 S31: 0.6430 S32: 0.7896 S33: -0.2376 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN C AND RESID 8:15) REMARK 3 ORIGIN FOR THE GROUP (A): 46.9666 -42.1701 0.7304 REMARK 3 T TENSOR REMARK 3 T11: 0.1882 T22: 0.2425 REMARK 3 T33: 0.2280 T12: -0.0052 REMARK 3 T13: -0.0196 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 9.1318 L22: 2.5151 REMARK 3 L33: 3.1869 L12: 4.4591 REMARK 3 L13: 0.6810 L23: -0.7067 REMARK 3 S TENSOR REMARK 3 S11: 0.3050 S12: -0.4019 S13: -0.4001 REMARK 3 S21: 0.0141 S22: -0.3935 S23: -0.3529 REMARK 3 S31: 0.3090 S32: -0.1205 S33: 0.1021 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN C AND RESID 16:23) REMARK 3 ORIGIN FOR THE GROUP (A): 56.8974 -36.9179 -1.0854 REMARK 3 T TENSOR REMARK 3 T11: 0.3393 T22: 0.2721 REMARK 3 T33: 0.3664 T12: 0.0427 REMARK 3 T13: 0.0561 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 2.2142 L22: 7.4392 REMARK 3 L33: 8.4388 L12: 1.6885 REMARK 3 L13: 1.3514 L23: -1.6058 REMARK 3 S TENSOR REMARK 3 S11: 0.5097 S12: 0.2949 S13: 0.7611 REMARK 3 S21: -0.2843 S22: -0.5559 S23: 0.0127 REMARK 3 S31: -0.8095 S32: 0.0751 S33: -0.0699 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN C AND RESID 24:33) REMARK 3 ORIGIN FOR THE GROUP (A): 63.4311 -41.6563 2.8042 REMARK 3 T TENSOR REMARK 3 T11: 0.2469 T22: 0.3476 REMARK 3 T33: 0.3327 T12: 0.0247 REMARK 3 T13: 0.0106 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 7.0257 L22: 6.5008 REMARK 3 L33: 7.0542 L12: 6.7111 REMARK 3 L13: -1.9235 L23: -2.3562 REMARK 3 S TENSOR REMARK 3 S11: 0.0960 S12: 0.0517 S13: -0.3484 REMARK 3 S21: -0.1695 S22: -0.1599 S23: -0.4680 REMARK 3 S31: -0.0344 S32: 0.5978 S33: 0.0857 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN C AND RESID 34:42) REMARK 3 ORIGIN FOR THE GROUP (A): 52.3525 -41.1721 9.0612 REMARK 3 T TENSOR REMARK 3 T11: 0.2798 T22: 0.2619 REMARK 3 T33: 0.2034 T12: -0.0236 REMARK 3 T13: 0.0130 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 9.6784 L22: 7.0216 REMARK 3 L33: 3.5740 L12: -5.1897 REMARK 3 L13: 0.7452 L23: 1.0350 REMARK 3 S TENSOR REMARK 3 S11: -0.3370 S12: -0.7734 S13: -0.2842 REMARK 3 S21: 0.7507 S22: 0.1616 S23: 0.0979 REMARK 3 S31: 0.1796 S32: -0.0981 S33: 0.1244 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN C AND RESID 43:48) REMARK 3 ORIGIN FOR THE GROUP (A): 43.8997 -32.7515 9.6205 REMARK 3 T TENSOR REMARK 3 T11: 0.2995 T22: 0.3750 REMARK 3 T33: 0.3186 T12: -0.0481 REMARK 3 T13: 0.0070 T23: -0.1193 REMARK 3 L TENSOR REMARK 3 L11: 4.5841 L22: 4.5995 REMARK 3 L33: 3.3746 L12: -3.7796 REMARK 3 L13: -1.2268 L23: -1.1139 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: -1.2089 S13: 0.9701 REMARK 3 S21: 0.7502 S22: -0.1450 S23: -0.3643 REMARK 3 S31: -0.2086 S32: 0.2445 S33: 0.2940 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN C AND RESID 49:68) REMARK 3 ORIGIN FOR THE GROUP (A): 35.5592 -43.4400 -4.3259 REMARK 3 T TENSOR REMARK 3 T11: 0.2425 T22: 0.3491 REMARK 3 T33: 0.3366 T12: -0.0131 REMARK 3 T13: -0.0408 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 2.5298 L22: 4.9143 REMARK 3 L33: 7.2477 L12: 2.8219 REMARK 3 L13: 2.2177 L23: 4.9613 REMARK 3 S TENSOR REMARK 3 S11: -0.1401 S12: 0.0190 S13: 0.1294 REMARK 3 S21: -0.5558 S22: -0.2929 S23: 0.8470 REMARK 3 S31: -0.0681 S32: -0.6314 S33: 0.4715 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN C AND RESID 69:75) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5565 -61.2848 -3.6421 REMARK 3 T TENSOR REMARK 3 T11: 0.6741 T22: 0.4030 REMARK 3 T33: 0.5522 T12: -0.1183 REMARK 3 T13: 0.0022 T23: -0.0816 REMARK 3 L TENSOR REMARK 3 L11: 6.6185 L22: 7.5208 REMARK 3 L33: 5.2356 L12: -6.8088 REMARK 3 L13: 5.3404 L23: -6.1884 REMARK 3 S TENSOR REMARK 3 S11: 0.8516 S12: 0.4083 S13: -2.1684 REMARK 3 S21: 0.0537 S22: 0.4616 S23: 1.0350 REMARK 3 S31: 1.7943 S32: -0.1539 S33: -1.3199 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 0:3) REMARK 3 ORIGIN FOR THE GROUP (A): 64.4751 -60.3535 -13.5233 REMARK 3 T TENSOR REMARK 3 T11: 0.4543 T22: 0.8875 REMARK 3 T33: 0.5164 T12: 0.0963 REMARK 3 T13: -0.0581 T23: 0.0524 REMARK 3 L TENSOR REMARK 3 L11: 8.0968 L22: 2.8489 REMARK 3 L33: 3.0672 L12: -0.0921 REMARK 3 L13: -3.1980 L23: -1.2059 REMARK 3 S TENSOR REMARK 3 S11: -0.1480 S12: 0.6880 S13: 2.7291 REMARK 3 S21: -0.9215 S22: 0.3211 S23: 0.5219 REMARK 3 S31: 1.2278 S32: -1.2954 S33: -0.1537 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 4:7) REMARK 3 ORIGIN FOR THE GROUP (A): 59.2438 -56.3979 1.8433 REMARK 3 T TENSOR REMARK 3 T11: 0.5297 T22: 0.4597 REMARK 3 T33: 0.5072 T12: 0.0476 REMARK 3 T13: 0.0921 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 5.1386 L22: 5.5731 REMARK 3 L33: 5.7754 L12: -5.3261 REMARK 3 L13: -5.2443 L23: 5.5853 REMARK 3 S TENSOR REMARK 3 S11: -0.2769 S12: 0.6582 S13: -0.7013 REMARK 3 S21: 0.8720 S22: -0.1012 S23: -0.4736 REMARK 3 S31: 1.8328 S32: -0.7257 S33: 0.4447 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 8:12) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9990 -50.0072 6.4153 REMARK 3 T TENSOR REMARK 3 T11: 0.2170 T22: 0.3093 REMARK 3 T33: 0.2497 T12: -0.0486 REMARK 3 T13: 0.0343 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 4.2634 L22: 9.9443 REMARK 3 L33: 5.8445 L12: 2.5825 REMARK 3 L13: -1.5629 L23: 1.1750 REMARK 3 S TENSOR REMARK 3 S11: 0.2893 S12: -0.4281 S13: -0.2635 REMARK 3 S21: 0.4140 S22: -0.6385 S23: 0.3521 REMARK 3 S31: 0.2495 S32: -0.1770 S33: 0.3029 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 13:16) REMARK 3 ORIGIN FOR THE GROUP (A): 36.0281 -66.0708 7.8025 REMARK 3 T TENSOR REMARK 3 T11: 0.6065 T22: 0.4839 REMARK 3 T33: 0.4939 T12: -0.1384 REMARK 3 T13: 0.1240 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 5.1106 L22: 5.5875 REMARK 3 L33: 6.7929 L12: 1.9826 REMARK 3 L13: -3.2205 L23: -5.7615 REMARK 3 S TENSOR REMARK 3 S11: -0.5192 S12: -0.0466 S13: -0.6770 REMARK 3 S21: -1.1497 S22: 0.4597 S23: 0.6068 REMARK 3 S31: 1.9723 S32: 0.3210 S33: -0.0972 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 0:3) REMARK 3 ORIGIN FOR THE GROUP (A): 33.2235 -60.7392 14.9938 REMARK 3 T TENSOR REMARK 3 T11: 0.4052 T22: 0.5641 REMARK 3 T33: 0.4951 T12: -0.0506 REMARK 3 T13: 0.0904 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 7.7633 L22: 3.9534 REMARK 3 L33: 3.8142 L12: 1.0531 REMARK 3 L13: -2.2499 L23: 3.1368 REMARK 3 S TENSOR REMARK 3 S11: -1.0377 S12: 0.1136 S13: 0.0159 REMARK 3 S21: -0.7557 S22: 0.6458 S23: 0.0217 REMARK 3 S31: 0.0992 S32: 0.5757 S33: 0.3262 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN B AND RESID 4:7) REMARK 3 ORIGIN FOR THE GROUP (A): 45.7169 -60.2586 6.7221 REMARK 3 T TENSOR REMARK 3 T11: 0.3088 T22: 0.3916 REMARK 3 T33: 0.4010 T12: 0.0431 REMARK 3 T13: 0.0744 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 7.7431 L22: 2.9687 REMARK 3 L33: 4.7086 L12: 2.3717 REMARK 3 L13: -5.9992 L23: -2.2969 REMARK 3 S TENSOR REMARK 3 S11: -0.2031 S12: -0.9018 S13: 0.1204 REMARK 3 S21: 0.1308 S22: -0.0470 S23: 0.2031 REMARK 3 S31: 0.6969 S32: 1.2059 S33: 0.2998 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN B AND RESID 8:11) REMARK 3 ORIGIN FOR THE GROUP (A): 52.7785 -49.0363 -3.8176 REMARK 3 T TENSOR REMARK 3 T11: 0.2374 T22: 0.3108 REMARK 3 T33: 0.2355 T12: -0.0026 REMARK 3 T13: 0.0278 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 2.0662 L22: 2.6208 REMARK 3 L33: 2.7175 L12: -0.2185 REMARK 3 L13: 1.7407 L23: 0.8060 REMARK 3 S TENSOR REMARK 3 S11: 0.0831 S12: 1.0614 S13: -0.0988 REMARK 3 S21: -0.3591 S22: -0.0525 S23: -0.1211 REMARK 3 S31: 0.3308 S32: 0.2819 S33: -0.1071 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN B AND RESID 12:15) REMARK 3 ORIGIN FOR THE GROUP (A): 67.6150 -55.1307 -3.2853 REMARK 3 T TENSOR REMARK 3 T11: 0.3064 T22: 0.5094 REMARK 3 T33: 0.4579 T12: 0.1736 REMARK 3 T13: 0.0077 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 3.1310 L22: 4.7905 REMARK 3 L33: 2.5867 L12: -3.0011 REMARK 3 L13: 1.2684 L23: 0.7676 REMARK 3 S TENSOR REMARK 3 S11: 0.0635 S12: 0.7850 S13: 0.0299 REMARK 3 S21: 0.9881 S22: 0.0161 S23: -1.0556 REMARK 3 S31: 0.5412 S32: 0.6418 S33: -0.3077 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Y60 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000206393. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23871 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 24.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MMT BUFFER PH 5.0, 25% (W/V) PEG REMARK 280 1500, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 10.80567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.61133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 10.80567 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.61133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG C 76 REMARK 465 LYS C 77 REMARK 465 LYS C 78 REMARK 465 GLN C 79 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT B 16 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DT B 16 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT B 16 C7 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN C 24 O HOH C 101 2.18 REMARK 500 O HOH A 127 O HOH A 128 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC B 12 O3' DC B 12 C3' -0.037 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 1 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC A 2 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT A 3 O3' - P - OP2 ANGL. DEV. = -25.4 DEGREES REMARK 500 DT A 3 O3' - P - OP1 ANGL. DEV. = -18.6 DEGREES REMARK 500 DT A 3 OP1 - P - OP2 ANGL. DEV. = 11.3 DEGREES REMARK 500 DT A 8 C5 - C4 - O4 ANGL. DEV. = -4.7 DEGREES REMARK 500 DT A 9 O4' - C1' - N1 ANGL. DEV. = -4.8 DEGREES REMARK 500 DG A 10 O4' - C1' - N9 ANGL. DEV. = -4.9 DEGREES REMARK 500 DG A 14 O4' - C1' - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 DG B 0 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC B 2 O4' - C1' - N1 ANGL. DEV. = -6.8 DEGREES REMARK 500 DC B 3 O4' - C1' - N1 ANGL. DEV. = -4.5 DEGREES REMARK 500 DG B 5 P - O5' - C5' ANGL. DEV. = -10.1 DEGREES REMARK 500 DG B 5 C1' - O4' - C4' ANGL. DEV. = -7.3 DEGREES REMARK 500 DG B 5 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT B 10 C1' - O4' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 DT B 10 O4' - C1' - N1 ANGL. DEV. = -4.7 DEGREES REMARK 500 DT B 13 O4' - C1' - N1 ANGL. DEV. = -6.8 DEGREES REMARK 500 DA B 14 C1' - O4' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 DA B 14 C3' - C2' - C1' ANGL. DEV. = -8.2 DEGREES REMARK 500 DG B 15 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL DBREF 4Y60 C 1 79 UNP P43680 SOX18_MOUSE 77 155 DBREF 4Y60 A 0 16 PDB 4Y60 4Y60 0 16 DBREF 4Y60 B 0 16 PDB 4Y60 4Y60 0 16 SEQADV 4Y60 GLY C 0 UNP P43680 EXPRESSION TAG SEQRES 1 C 80 GLY LEU ARG ILE ARG ARG PRO MET ASN ALA PHE MET VAL SEQRES 2 C 80 TRP ALA LYS ASP GLU ARG LYS ARG LEU ALA GLN GLN ASN SEQRES 3 C 80 PRO ASP LEU HIS ASN ALA VAL LEU SER LYS MET LEU GLY SEQRES 4 C 80 LYS ALA TRP LYS GLU LEU ASN THR ALA GLU LYS ARG PRO SEQRES 5 C 80 PHE VAL GLU GLU ALA GLU ARG LEU ARG VAL GLN HIS LEU SEQRES 6 C 80 ARG ASP HIS PRO ASN TYR LYS TYR ARG PRO ARG ARG LYS SEQRES 7 C 80 LYS GLN SEQRES 1 A 17 DC DA DC DT DA DG DC DA DT DT DG DT DC SEQRES 2 A 17 DT DG DG DG SEQRES 1 B 17 DG DC DC DC DA DG DA DC DA DA DT DG DC SEQRES 2 B 17 DT DA DG DT FORMUL 4 HOH *194(H2 O) HELIX 1 AA1 ASN C 8 ASN C 25 1 18 HELIX 2 AA2 HIS C 29 LEU C 44 1 16 HELIX 3 AA3 ASN C 45 HIS C 67 1 23 CRYST1 111.942 111.942 32.417 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008933 0.005158 0.000000 0.00000 SCALE2 0.000000 0.010315 0.000000 0.00000 SCALE3 0.000000 0.000000 0.030848 0.00000