HEADER TRANSFERASE 12-FEB-15 4Y63 TITLE AAGLYB IN COMPLEX WITH AMINO-ACID ANALOGUES CAVEAT 4Y63 48O A 402 HAS WRONG CHIRALITY AT ATOM C11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTO-BLOOD GROUP ABO SYSTEM TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FUCOSYLGLYCOPROTEIN 3-ALPHA-GALACTOSYLTRANSFERASE, COMPND 5 FUCOSYLGLYCOPROTEIN ALPHA-N-ACETYLGALACTOSAMINYLTRANSFERASE, COMPND 6 GLYCOPROTEIN-FUCOSYLGALACTOSIDE ALPHA-N- COMPND 7 ACETYLGALACTOSAMINYLTRANSFERASE,GLYCOPROTEIN-FUCOSYLGALACTOSIDE COMPND 8 ALPHA-GALACTOSYLTRANSFERASE,HISTO-BLOOD GROUP A TRANSFERASE,A COMPND 9 TRANSFERASE,HISTO-BLOOD GROUP B TRANSFERASE,B TRANSFERASE,NAGAT; COMPND 10 EC: 2.4.1.40,2.4.1.37; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AAGLYB, INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.WANG,J.A.CUESTA-SEIJO,A.STRIEBECK,D.LAFONT,M.M.PALCIC,S.VIDAL REVDAT 3 10-JAN-24 4Y63 1 REMARK REVDAT 2 30-AUG-17 4Y63 1 JRNL REVDAT 1 16-SEP-15 4Y63 0 JRNL AUTH S.WANG,J.A.CUESTA-SEIJO,A.STRIEBECK,D.LAFONT,M.M.PALCIC, JRNL AUTH 2 S.VIDAL JRNL TITL DESIGN OF GLYCOSYLTRANSFERASE INHIBITORS: SERINE ANALOGUES JRNL TITL 2 AS PYROPHOSPHATE SURROGATES? JRNL REF CHEMPLUSCHEM V. 80 1525 2015 JRNL REFN ESSN 2192-6506 JRNL DOI 10.1002/CPLU.201500282 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 76190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1556 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5590 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2315 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 377 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.59000 REMARK 3 B22 (A**2) : 0.81000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.048 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.046 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.749 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2460 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2330 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3351 ; 1.298 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5353 ; 1.322 ; 3.010 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 290 ; 6.218 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;32.148 ;22.564 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 401 ;10.580 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;15.493 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2720 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 607 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1137 ; 0.625 ; 1.158 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1136 ; 0.620 ; 1.156 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1422 ; 0.817 ; 1.740 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1423 ; 0.817 ; 1.741 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1323 ; 1.079 ; 1.339 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1322 ; 1.079 ; 1.338 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1924 ; 1.134 ; 1.944 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3084 ; 2.192 ;11.461 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2842 ; 1.596 ;10.209 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4790 ; 1.412 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 105 ;22.926 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4990 ; 5.793 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Y63 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206907. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77776 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 42.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 0.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4KC1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350 AMMONIUM SULFATE MOPS MNCL2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.04500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.04500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.42000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.57500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.42000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.57500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.04500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.42000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.57500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.04500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.42000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.57500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 526 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 VAL A 4 REMARK 465 LEU A 5 REMARK 465 ARG A 6 REMARK 465 THR A 7 REMARK 465 LEU A 8 REMARK 465 ALA A 9 REMARK 465 GLY A 10 REMARK 465 LYS A 11 REMARK 465 PRO A 12 REMARK 465 LYS A 13 REMARK 465 CYS A 14 REMARK 465 HIS A 15 REMARK 465 ALA A 16 REMARK 465 LEU A 17 REMARK 465 ARG A 18 REMARK 465 PRO A 19 REMARK 465 MET A 20 REMARK 465 ILE A 21 REMARK 465 LEU A 22 REMARK 465 PHE A 23 REMARK 465 LEU A 24 REMARK 465 ILE A 25 REMARK 465 MET A 26 REMARK 465 LEU A 27 REMARK 465 VAL A 28 REMARK 465 LEU A 29 REMARK 465 VAL A 30 REMARK 465 LEU A 31 REMARK 465 PHE A 32 REMARK 465 GLY A 33 REMARK 465 TYR A 34 REMARK 465 GLY A 35 REMARK 465 VAL A 36 REMARK 465 LEU A 37 REMARK 465 SER A 38 REMARK 465 PRO A 39 REMARK 465 ARG A 40 REMARK 465 SER A 41 REMARK 465 LEU A 42 REMARK 465 MET A 43 REMARK 465 PRO A 44 REMARK 465 GLY A 45 REMARK 465 SER A 46 REMARK 465 LEU A 47 REMARK 465 GLU A 48 REMARK 465 ARG A 49 REMARK 465 GLY A 50 REMARK 465 PHE A 51 REMARK 465 CYS A 52 REMARK 465 MET A 53 REMARK 465 ALA A 54 REMARK 465 VAL A 55 REMARK 465 ARG A 56 REMARK 465 GLU A 57 REMARK 465 PRO A 58 REMARK 465 ASP A 59 REMARK 465 HIS A 60 REMARK 465 LEU A 61 REMARK 465 GLN A 62 REMARK 465 ARG A 63 REMARK 465 LYS A 346 REMARK 465 ASN A 347 REMARK 465 HIS A 348 REMARK 465 GLN A 349 REMARK 465 ALA A 350 REMARK 465 VAL A 351 REMARK 465 ARG A 352 REMARK 465 ASN A 353 REMARK 465 PRO A 354 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 124 -125.16 54.95 REMARK 500 ARG A 199 -45.71 -138.97 REMARK 500 THR A 245 47.03 -86.79 REMARK 500 PHE A 269 101.06 -161.01 REMARK 500 HIS A 301 -134.60 59.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 856 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 857 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 858 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 859 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 860 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 861 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 862 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 863 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 864 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 865 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 866 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 867 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A 868 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 869 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 870 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A 871 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A 872 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A 873 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A 874 DISTANCE = 7.30 ANGSTROMS REMARK 525 HOH A 875 DISTANCE = 7.48 ANGSTROMS REMARK 525 HOH A 876 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH A 877 DISTANCE = 10.44 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 213 OD2 REMARK 620 2 48O A 402 O6 102.7 REMARK 620 3 HOH A 508 O 90.6 95.6 REMARK 620 4 HOH A 537 O 168.9 88.4 88.9 REMARK 620 5 HOH A 708 O 85.5 152.7 110.5 84.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BHE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 48O A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 403 DBREF 4Y63 A 1 354 UNP P16442 BGAT_HUMAN 1 354 SEQADV 4Y63 GLY A 266 UNP P16442 LEU 266 CONFLICT SEQADV 4Y63 ALA A 268 UNP P16442 GLY 268 VARIANT SEQRES 1 A 354 MET ALA GLU VAL LEU ARG THR LEU ALA GLY LYS PRO LYS SEQRES 2 A 354 CYS HIS ALA LEU ARG PRO MET ILE LEU PHE LEU ILE MET SEQRES 3 A 354 LEU VAL LEU VAL LEU PHE GLY TYR GLY VAL LEU SER PRO SEQRES 4 A 354 ARG SER LEU MET PRO GLY SER LEU GLU ARG GLY PHE CYS SEQRES 5 A 354 MET ALA VAL ARG GLU PRO ASP HIS LEU GLN ARG VAL SER SEQRES 6 A 354 LEU PRO ARG MET VAL TYR PRO GLN PRO LYS VAL LEU THR SEQRES 7 A 354 PRO CYS ARG LYS ASP VAL LEU VAL VAL THR PRO TRP LEU SEQRES 8 A 354 ALA PRO ILE VAL TRP GLU GLY THR PHE ASN ILE ASP ILE SEQRES 9 A 354 LEU ASN GLU GLN PHE ARG LEU GLN ASN THR THR ILE GLY SEQRES 10 A 354 LEU THR VAL PHE ALA ILE LYS LYS TYR VAL ALA PHE LEU SEQRES 11 A 354 LYS LEU PHE LEU GLU THR ALA GLU LYS HIS PHE MET VAL SEQRES 12 A 354 GLY HIS ARG VAL HIS TYR TYR VAL PHE THR ASP GLN PRO SEQRES 13 A 354 ALA ALA VAL PRO ARG VAL THR LEU GLY THR GLY ARG GLN SEQRES 14 A 354 LEU SER VAL LEU GLU VAL ARG ALA TYR LYS ARG TRP GLN SEQRES 15 A 354 ASP VAL SER MET ARG ARG MET GLU MET ILE SER ASP PHE SEQRES 16 A 354 CYS GLU ARG ARG PHE LEU SER GLU VAL ASP TYR LEU VAL SEQRES 17 A 354 CYS VAL ASP VAL ASP MET GLU PHE ARG ASP HIS VAL GLY SEQRES 18 A 354 VAL GLU ILE LEU THR PRO LEU PHE GLY THR LEU HIS PRO SEQRES 19 A 354 GLY PHE TYR GLY SER SER ARG GLU ALA PHE THR TYR GLU SEQRES 20 A 354 ARG ARG PRO GLN SER GLN ALA TYR ILE PRO LYS ASP GLU SEQRES 21 A 354 GLY ASP PHE TYR TYR GLY GLY ALA PHE PHE GLY GLY SER SEQRES 22 A 354 VAL GLN GLU VAL GLN ARG LEU THR ARG ALA CYS HIS GLN SEQRES 23 A 354 ALA MET MET VAL ASP GLN ALA ASN GLY ILE GLU ALA VAL SEQRES 24 A 354 TRP HIS ASP GLU SER HIS LEU ASN LYS TYR LEU LEU ARG SEQRES 25 A 354 HIS LYS PRO THR LYS VAL LEU SER PRO GLU TYR LEU TRP SEQRES 26 A 354 ASP GLN GLN LEU LEU GLY TRP PRO ALA VAL LEU ARG LYS SEQRES 27 A 354 LEU ARG PHE THR ALA VAL PRO LYS ASN HIS GLN ALA VAL SEQRES 28 A 354 ARG ASN PRO HET BHE A 401 30 HET 48O A 402 24 HET MN A 403 1 HETNAM BHE OCTYL 2-O-(6-DEOXY-ALPHA-L-GALACTOPYRANOSYL)-BETA-D- HETNAM 2 BHE GALACTOPYRANOSIDE HETNAM 48O 5'-DEOXY-5'-{[(2S)-2-(TRIAZA-1,2-DIEN-2-IUM-1-YL) HETNAM 2 48O PROPANOYL]AMINO}URIDINE HETNAM MN MANGANESE (II) ION HETSYN BHE H-ANTIGEN ACCEPTOR; ALPHA-L-FUCP-(1,2)-BETA-D-GALP- HETSYN 2 BHE O(CH2)7CH3 FORMUL 2 BHE C20 H38 O10 FORMUL 3 48O C12 H17 N6 O6 1+ FORMUL 4 MN MN 2+ FORMUL 5 HOH *377(H2 O) HELIX 1 AA1 ASN A 101 GLN A 112 1 12 HELIX 2 AA2 ILE A 123 ALA A 128 5 6 HELIX 3 AA3 PHE A 129 PHE A 141 1 13 HELIX 4 AA4 GLN A 155 VAL A 159 5 5 HELIX 5 AA5 ARG A 180 ARG A 187 1 8 HELIX 6 AA6 ARG A 187 ARG A 199 1 13 HELIX 7 AA7 ARG A 199 VAL A 204 1 6 HELIX 8 AA8 GLY A 221 LEU A 225 5 5 HELIX 9 AA9 SER A 240 PHE A 244 5 5 HELIX 10 AB1 VAL A 274 ASN A 294 1 21 HELIX 11 AB2 TRP A 300 HIS A 313 1 14 HELIX 12 AB3 PRO A 321 LEU A 324 5 4 HELIX 13 AB4 ASP A 326 GLY A 331 1 6 SHEET 1 AA1 8 ILE A 94 VAL A 95 0 SHEET 2 AA1 8 LYS A 317 LEU A 319 1 O VAL A 318 N VAL A 95 SHEET 3 AA1 8 LEU A 228 THR A 231 1 N GLY A 230 O LEU A 319 SHEET 4 AA1 8 PHE A 269 SER A 273 -1 O GLY A 271 N PHE A 229 SHEET 5 AA1 8 TYR A 206 VAL A 210 -1 N CYS A 209 O PHE A 270 SHEET 6 AA1 8 THR A 115 ALA A 122 1 N GLY A 117 O TYR A 206 SHEET 7 AA1 8 ARG A 146 THR A 153 1 O PHE A 152 N ALA A 122 SHEET 8 AA1 8 ARG A 168 GLU A 174 1 O GLN A 169 N TYR A 149 SHEET 1 AA2 2 MET A 214 PHE A 216 0 SHEET 2 AA2 2 PHE A 341 ALA A 343 -1 O THR A 342 N GLU A 215 LINK OD2 ASP A 213 MN MN A 403 1555 1555 2.29 LINK O6 48O A 402 MN MN A 403 1555 1555 2.00 LINK MN MN A 403 O HOH A 508 1555 1555 2.14 LINK MN MN A 403 O HOH A 537 1555 1555 2.28 LINK MN MN A 403 O HOH A 708 1555 1555 2.21 SITE 1 AC1 18 HIS A 233 GLY A 235 PHE A 236 THR A 245 SITE 2 AC1 18 TYR A 264 TRP A 300 GLU A 303 ASP A 326 SITE 3 AC1 18 HOH A 513 HOH A 515 HOH A 521 HOH A 522 SITE 4 AC1 18 HOH A 534 HOH A 537 HOH A 569 HOH A 651 SITE 5 AC1 18 HOH A 697 HOH A 708 SITE 1 AC2 16 PHE A 121 ILE A 123 TYR A 126 TRP A 181 SITE 2 AC2 16 VAL A 184 ARG A 188 ASP A 211 VAL A 212 SITE 3 AC2 16 ASP A 213 MN A 403 HOH A 508 HOH A 523 SITE 4 AC2 16 HOH A 537 HOH A 550 HOH A 690 HOH A 729 SITE 1 AC3 5 ASP A 213 48O A 402 HOH A 508 HOH A 537 SITE 2 AC3 5 HOH A 708 CRYST1 52.840 149.150 80.090 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018925 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006705 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012486 0.00000