HEADER UNKNOWN FUNCTION 12-FEB-15 4Y6C TITLE Q17M CRYSTAL STRUCTURE OF PODOSOPORA ANSERINA PUTATIVE KINESIN LIGHT TITLE 2 CHAIN NEARLY IDENTICAL TPR-LIKE REPEATS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANSERINA PUTATIVE KINESIN LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: Q17M; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PODOSPORA ANSERINA; SOURCE 3 ORGANISM_TAXID: 5145; SOURCE 4 STRAIN: S MAT+; SOURCE 5 GENE: CDP31375.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DE3; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: ROSETTA 2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TETRATRICOPEPTIDE REPEAT, 42PR, TPR, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.D.MAROLD,J.M.KAVRAN,G.D.BOWMAN,D.BARRICK REVDAT 4 01-NOV-17 4Y6C 1 JRNL REMARK REVDAT 3 11-NOV-15 4Y6C 1 JRNL REVDAT 2 21-OCT-15 4Y6C 1 JRNL REVDAT 1 07-OCT-15 4Y6C 0 JRNL AUTH J.D.MAROLD,J.M.KAVRAN,G.D.BOWMAN,D.BARRICK JRNL TITL A NATURALLY OCCURRING REPEAT PROTEIN WITH HIGH INTERNAL JRNL TITL 2 SEQUENCE IDENTITY DEFINES A NEW CLASS OF TPR-LIKE PROTEINS. JRNL REF STRUCTURE V. 23 2055 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26439765 JRNL DOI 10.1016/J.STR.2015.07.022 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7720 - 3.5441 1.00 2911 158 0.1706 0.1986 REMARK 3 2 3.5441 - 2.8133 1.00 2747 155 0.1791 0.2177 REMARK 3 3 2.8133 - 2.4577 1.00 2749 136 0.1785 0.2121 REMARK 3 4 2.4577 - 2.2330 1.00 2703 153 0.1651 0.2139 REMARK 3 5 2.2330 - 2.0730 1.00 2699 123 0.1652 0.2128 REMARK 3 6 2.0730 - 1.9508 1.00 2726 141 0.1744 0.2183 REMARK 3 7 1.9508 - 1.8531 1.00 2651 151 0.1704 0.2308 REMARK 3 8 1.8531 - 1.7724 0.99 2664 144 0.1819 0.2474 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1761 REMARK 3 ANGLE : 0.922 2386 REMARK 3 CHIRALITY : 0.037 267 REMARK 3 PLANARITY : 0.004 321 REMARK 3 DIHEDRAL : 17.576 698 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -10.4800 -40.3489 -0.4465 REMARK 3 T TENSOR REMARK 3 T11: 0.0711 T22: 0.0891 REMARK 3 T33: 0.0546 T12: 0.0063 REMARK 3 T13: 0.0076 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.4883 L22: 1.2250 REMARK 3 L33: 0.3766 L12: -0.0667 REMARK 3 L13: 0.0381 L23: -0.1217 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: 0.0121 S13: 0.0235 REMARK 3 S21: 0.0206 S22: -0.0138 S23: -0.0609 REMARK 3 S31: -0.0194 S32: -0.0165 S33: -0.0116 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Y6C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206676. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 SAGITTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23013 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.772 REMARK 200 RESOLUTION RANGE LOW (A) : 39.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : 0.17500 REMARK 200 R SYM (I) : 0.17200 REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 13.90 REMARK 200 R MERGE FOR SHELL (I) : 0.34800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 11.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 35% (W/V) PEG 4000, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295.16K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.55150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.62100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.55150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.62100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DETERMINED BY ANALYTICAL ULTRACENTRIFUGATION SEDIMENTATION REMARK 300 VELOCITY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -91.24200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -3 REMARK 465 GLY A -2 REMARK 465 LEU A 211 REMARK 465 VAL A 212 REMARK 465 PRO A 213 REMARK 465 ARG A 214 REMARK 465 GLY A 215 REMARK 465 SER A 216 REMARK 465 GLY A 217 REMARK 465 SER A 218 REMARK 465 SER A 219 REMARK 465 HIS A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 420 O HOH A 459 2.13 REMARK 500 OE1 GLU A 111 O HOH A 550 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Y6W RELATED DB: PDB DBREF 4Y6C A -3 225 PDB 4Y6C 4Y6C -3 225 SEQRES 1 A 229 MET GLY HIS MSE GLU HIS PRO SER ARG LEU ARG SER GLN SEQRES 2 A 229 HIS GLU LEU ALA ARG ARG TYR GLN GLN ASN GLY GLN VAL SEQRES 3 A 229 GLN GLU ALA VAL GLU LEU LEU GLU GLN VAL VAL ALA ILE SEQRES 4 A 229 GLN ALA LYS THR LEU ARG SER GLU HIS PRO SER ARG LEU SEQRES 5 A 229 ALA SER GLN HIS GLU LEU ALA ARG ALA TYR MSE ALA ASN SEQRES 6 A 229 GLY GLN VAL GLN GLU ALA VAL GLU LEU LEU GLU GLN VAL SEQRES 7 A 229 VAL ALA ILE GLN ALA LYS THR LEU ARG SER GLU HIS PRO SEQRES 8 A 229 SER ARG LEU ALA SER GLN HIS GLU LEU ALA ARG ALA TYR SEQRES 9 A 229 MSE ALA ASN GLY GLN VAL GLN GLU ALA VAL GLU LEU LEU SEQRES 10 A 229 GLU GLN VAL VAL ALA ILE GLN ALA LYS THR LEU ARG SER SEQRES 11 A 229 GLU HIS PRO SER ARG LEU ALA SER GLN HIS GLU LEU ALA SEQRES 12 A 229 ARG ALA TYR MSE ALA ASN GLY GLN VAL GLN GLU ALA VAL SEQRES 13 A 229 GLU LEU LEU GLU GLN VAL VAL ALA ILE GLN ALA LYS THR SEQRES 14 A 229 LEU ARG SER GLU HIS PRO SER ARG LEU ALA SER GLN HIS SEQRES 15 A 229 GLU LEU ALA ARG ALA TYR GLN ALA ASN GLY GLN ARG GLN SEQRES 16 A 229 GLU ALA GLN GLU LEU LEU GLU GLN VAL ARG ALA ILE GLN SEQRES 17 A 229 ALA LYS THR GLN ARG SER LEU VAL PRO ARG GLY SER GLY SEQRES 18 A 229 SER SER HIS HIS HIS HIS HIS HIS HET MSE A 0 13 HET MSE A 59 13 HET MSE A 101 8 HET MSE A 143 8 HET SO4 A 301 5 HET SO4 A 302 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *169(H2 O) HELIX 1 AA1 HIS A 2 LEU A 6 5 5 HELIX 2 AA2 ARG A 7 ASN A 19 1 13 HELIX 3 AA3 GLN A 21 LYS A 38 1 18 HELIX 4 AA4 HIS A 44 ASN A 61 1 18 HELIX 5 AA5 GLN A 63 LEU A 82 1 20 HELIX 6 AA6 HIS A 86 ASN A 103 1 18 HELIX 7 AA7 GLN A 105 LEU A 124 1 20 HELIX 8 AA8 HIS A 128 ASN A 145 1 18 HELIX 9 AA9 GLN A 147 LYS A 164 1 18 HELIX 10 AB1 HIS A 170 ASN A 187 1 18 HELIX 11 AB2 GLN A 189 ARG A 209 1 21 LINK C HIS A -1 N MSE A 0 1555 1555 1.33 LINK C MSE A 0 N GLU A 1 1555 1555 1.33 LINK C TYR A 58 N MSE A 59 1555 1555 1.33 LINK C MSE A 59 N ALA A 60 1555 1555 1.33 LINK C TYR A 100 N MSE A 101 1555 1555 1.33 LINK C MSE A 101 N ALA A 102 1555 1555 1.33 LINK C TYR A 142 N MSE A 143 1555 1555 1.33 LINK C MSE A 143 N ALA A 144 1555 1555 1.33 SITE 1 AC1 5 ARG A 7 HIS A 10 ARG A 14 HOH A 492 SITE 2 AC1 5 HOH A 533 SITE 1 AC2 5 ARG A 83 SER A 84 ARG A 89 HOH A 405 SITE 2 AC2 5 HOH A 517 CRYST1 81.103 91.242 30.839 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012330 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.032426 0.00000