HEADER CELL ADHESION 16-FEB-15 4Y8A TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF CEACAM6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 6; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: IGV DOMAIN (UNP RESIDUES 34-141); COMPND 5 SYNONYM: NON-SPECIFIC CROSSREACTING ANTIGEN,NORMAL CROSS-REACTING COMPND 6 ANTIGEN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CEACAM6, NCA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR D.A.BONSOR,E.J.SUNDBERG REVDAT 5 27-SEP-23 4Y8A 1 LINK REVDAT 4 24-JAN-18 4Y8A 1 JRNL REMARK LINK SITE REVDAT 4 2 1 ATOM REVDAT 3 11-NOV-15 4Y8A 1 JRNL REVDAT 2 04-NOV-15 4Y8A 1 JRNL REVDAT 1 07-OCT-15 4Y8A 0 JRNL AUTH D.A.BONSOR,S.GUNTHER,R.BEADENKOPF,D.BECKETT,E.J.SUNDBERG JRNL TITL DIVERSE OLIGOMERIC STATES OF CEACAM IGV DOMAINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 13561 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26483485 JRNL DOI 10.1073/PNAS.1509511112 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 22783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1226 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1707 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1686 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : -0.42000 REMARK 3 B33 (A**2) : 1.37000 REMARK 3 B12 (A**2) : -0.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.732 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1748 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1641 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2378 ; 1.530 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3766 ; 1.208 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 216 ; 6.477 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;38.543 ;25.422 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 271 ;12.145 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;22.167 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 271 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2009 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 405 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 864 ; 3.569 ; 1.916 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 863 ; 3.569 ; 1.916 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1077 ; 4.341 ; 2.846 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 108 B 1 108 5765 0.170 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4Y8A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207033. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24029 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 83.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12500 REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 1.13400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2QSQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 0.1 M SODIUM ACETATE, PH REMARK 280 4.6, 0.2 M ZINC ACETATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.18000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.18000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.18000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 201 LIES ON A SPECIAL POSITION. REMARK 375 ZN ZN A 203 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 361 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 301 O HOH A 303 1.58 REMARK 500 O HOH B 301 O HOH B 323 1.73 REMARK 500 O HOH A 341 O HOH A 357 1.84 REMARK 500 NE2 HIS B 106 O HOH B 301 1.98 REMARK 500 O HOH A 359 O HOH A 362 2.00 REMARK 500 OE1 GLN B 104 O HOH B 301 2.01 REMARK 500 O HOH A 313 O HOH A 358 2.06 REMARK 500 ND1 HIS A 23 O HOH A 301 2.07 REMARK 500 O HOH B 338 O HOH B 351 2.08 REMARK 500 O HOH B 350 O HOH B 352 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 355 O HOH B 346 5554 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 72 -4.05 82.30 REMARK 500 LYS B 16 -154.00 -95.65 REMARK 500 ALA B 72 -6.44 83.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 205 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 1 O REMARK 620 2 HOH A 306 O 95.8 REMARK 620 3 HOH A 307 O 113.7 85.3 REMARK 620 4 HOH A 359 O 99.2 94.0 147.0 REMARK 620 5 HOH A 362 O 147.6 90.5 98.4 48.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 14 OE2 REMARK 620 2 TYR A 108 O 119.4 REMARK 620 3 HOH A 354 O 89.8 107.2 REMARK 620 4 HOH A 356 O 110.4 112.4 116.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 207 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 17 OE2 REMARK 620 2 GLU B 6 OE1 18.0 REMARK 620 3 HIS B 23 NE2 19.2 3.4 REMARK 620 4 HOH B 346 O 21.6 3.7 3.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 41 OD1 REMARK 620 2 GOL A 206 O1 155.5 REMARK 620 3 GOL A 206 O2 81.2 74.5 REMARK 620 4 TYR B 108 O 109.0 50.6 35.1 REMARK 620 5 HOH B 317 O 87.2 92.2 80.4 61.8 REMARK 620 6 HOH B 324 O 89.1 86.9 88.9 110.0 169.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 106 NE2 REMARK 620 2 HIS A 106 NE2 0.0 REMARK 620 3 HOH A 327 O 91.1 91.1 REMARK 620 4 HOH A 327 O 93.0 93.0 76.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 363 O REMARK 620 2 HOH A 363 O 78.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 302 O REMARK 620 2 HOH B 305 O 91.0 REMARK 620 3 HOH B 352 O 94.8 89.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Y88 RELATED DB: PDB REMARK 900 RELATED ID: 4Y89 RELATED DB: PDB REMARK 900 RELATED ID: 4Y8B RELATED DB: PDB DBREF 4Y8A A 1 108 UNP P40199 CEAM6_HUMAN 34 141 DBREF 4Y8A B 1 108 UNP P40199 CEAM6_HUMAN 34 141 SEQRES 1 A 108 ALA LYS LEU THR ILE GLU SER THR PRO PHE ASN VAL ALA SEQRES 2 A 108 GLU GLY LYS GLU VAL LEU LEU LEU ALA HIS ASN LEU PRO SEQRES 3 A 108 GLN ASN ARG ILE GLY TYR SER TRP TYR LYS GLY GLU ARG SEQRES 4 A 108 VAL ASP GLY ASN SER LEU ILE VAL GLY TYR VAL ILE GLY SEQRES 5 A 108 THR GLN GLN ALA THR PRO GLY PRO ALA TYR SER GLY ARG SEQRES 6 A 108 GLU THR ILE TYR PRO ASN ALA SER LEU LEU ILE GLN ASN SEQRES 7 A 108 VAL THR GLN ASN ASP THR GLY PHE TYR THR LEU GLN VAL SEQRES 8 A 108 ILE LYS SER ASP LEU VAL ASN GLU GLU ALA THR GLY GLN SEQRES 9 A 108 PHE HIS VAL TYR SEQRES 1 B 108 ALA LYS LEU THR ILE GLU SER THR PRO PHE ASN VAL ALA SEQRES 2 B 108 GLU GLY LYS GLU VAL LEU LEU LEU ALA HIS ASN LEU PRO SEQRES 3 B 108 GLN ASN ARG ILE GLY TYR SER TRP TYR LYS GLY GLU ARG SEQRES 4 B 108 VAL ASP GLY ASN SER LEU ILE VAL GLY TYR VAL ILE GLY SEQRES 5 B 108 THR GLN GLN ALA THR PRO GLY PRO ALA TYR SER GLY ARG SEQRES 6 B 108 GLU THR ILE TYR PRO ASN ALA SER LEU LEU ILE GLN ASN SEQRES 7 B 108 VAL THR GLN ASN ASP THR GLY PHE TYR THR LEU GLN VAL SEQRES 8 B 108 ILE LYS SER ASP LEU VAL ASN GLU GLU ALA THR GLY GLN SEQRES 9 B 108 PHE HIS VAL TYR HET ZN A 201 1 HET ZN A 202 1 HET ZN A 203 1 HET ZN A 204 1 HET ZN A 205 1 HET GOL A 206 6 HET ZN A 207 1 HET ZN B 201 1 HET GOL B 202 6 HET GOL B 203 6 HET GOL B 204 6 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 7(ZN 2+) FORMUL 8 GOL 4(C3 H8 O3) FORMUL 14 HOH *118(H2 O) HELIX 1 AA1 ASP A 41 ASN A 43 5 3 HELIX 2 AA2 THR A 80 THR A 84 5 5 HELIX 3 AA3 ASP B 41 ASN B 43 5 3 HELIX 4 AA4 THR B 80 THR B 84 5 5 SHEET 1 AA1 4 THR A 4 THR A 8 0 SHEET 2 AA1 4 VAL A 18 HIS A 23 -1 O HIS A 23 N THR A 4 SHEET 3 AA1 4 LEU A 74 ILE A 76 -1 O LEU A 74 N LEU A 20 SHEET 4 AA1 4 GLU A 66 ILE A 68 -1 N THR A 67 O LEU A 75 SHEET 1 AA2 6 ASN A 11 VAL A 12 0 SHEET 2 AA2 6 GLU A 99 VAL A 107 1 O HIS A 106 N VAL A 12 SHEET 3 AA2 6 GLY A 85 LYS A 93 -1 N TYR A 87 O GLY A 103 SHEET 4 AA2 6 ARG A 29 LYS A 36 -1 N ILE A 30 O ILE A 92 SHEET 5 AA2 6 LEU A 45 VAL A 50 -1 O ILE A 46 N TRP A 34 SHEET 6 AA2 6 GLN A 55 PRO A 58 -1 O THR A 57 N GLY A 48 SHEET 1 AA3 4 THR B 4 THR B 8 0 SHEET 2 AA3 4 VAL B 18 HIS B 23 -1 O HIS B 23 N THR B 4 SHEET 3 AA3 4 LEU B 74 ILE B 76 -1 O LEU B 74 N LEU B 20 SHEET 4 AA3 4 GLU B 66 ILE B 68 -1 N THR B 67 O LEU B 75 SHEET 1 AA4 6 ASN B 11 VAL B 12 0 SHEET 2 AA4 6 GLU B 99 VAL B 107 1 O HIS B 106 N VAL B 12 SHEET 3 AA4 6 GLY B 85 LYS B 93 -1 N VAL B 91 O GLU B 99 SHEET 4 AA4 6 ARG B 29 LYS B 36 -1 N ILE B 30 O ILE B 92 SHEET 5 AA4 6 LEU B 45 VAL B 50 -1 O ILE B 46 N TRP B 34 SHEET 6 AA4 6 GLN B 55 PRO B 58 -1 O THR B 57 N GLY B 48 LINK O ALA A 1 ZN ZN A 205 1555 1555 2.20 LINK OE2 GLU A 14 ZN ZN A 204 1555 1555 2.45 LINK OE2 GLU A 17 ZN ZN A 207 1555 5554 2.01 LINK OD1 ASP A 41 ZN ZN A 202 1555 1555 2.00 LINK NE2 HIS A 106 ZN ZN A 201 1555 1555 2.16 LINK NE2 HIS A 106 ZN ZN A 201 1555 2655 2.16 LINK O TYR A 108 ZN ZN A 204 1555 1555 2.25 LINK ZN ZN A 201 O HOH A 327 1555 1555 2.24 LINK ZN ZN A 201 O HOH A 327 1555 2655 2.24 LINK ZN ZN A 202 O1 GOL A 206 1555 1555 2.19 LINK ZN ZN A 202 O2 GOL A 206 1555 1555 2.24 LINK ZN ZN A 202 O TYR B 108 4665 1555 2.04 LINK ZN ZN A 202 O HOH B 317 1555 4664 2.18 LINK ZN ZN A 202 O HOH B 324 1555 1555 2.20 LINK ZN ZN A 203 O HOH A 363 1555 1555 2.29 LINK ZN ZN A 203 O HOH A 363 1555 2655 2.29 LINK ZN ZN A 204 O HOH A 354 1555 1555 2.19 LINK ZN ZN A 204 O HOH A 356 1555 1555 2.09 LINK ZN ZN A 205 O HOH A 306 1555 1555 2.12 LINK ZN ZN A 205 O HOH A 307 1555 1555 2.29 LINK ZN ZN A 205 O HOH A 359 1555 1555 2.59 LINK ZN ZN A 205 O HOH A 362 1555 1555 2.21 LINK ZN ZN A 207 OE1 GLU B 6 1555 1555 1.79 LINK ZN ZN A 207 NE2 HIS B 23 1555 1555 2.11 LINK ZN ZN A 207 O HOH B 346 1555 1555 2.06 LINK ZN ZN B 201 O HOH B 302 1555 1555 2.32 LINK ZN ZN B 201 O HOH B 305 1555 1555 2.09 LINK ZN ZN B 201 O HOH B 352 1555 1555 2.24 CISPEP 1 THR A 8 PRO A 9 0 -1.30 CISPEP 2 THR B 8 PRO B 9 0 -9.16 SITE 1 AC1 2 HIS A 106 HOH A 327 SITE 1 AC2 6 ASP A 41 GOL A 206 GLU B 100 TYR B 108 SITE 2 AC2 6 HOH B 317 HOH B 324 SITE 1 AC3 1 HOH A 363 SITE 1 AC4 5 GLU A 14 GLN A 81 TYR A 108 HOH A 354 SITE 2 AC4 5 HOH A 356 SITE 1 AC5 5 ALA A 1 HOH A 306 HOH A 307 HOH A 359 SITE 2 AC5 5 HOH A 362 SITE 1 AC6 11 ARG A 39 ASP A 41 ZN A 202 GLU B 14 SITE 2 AC6 11 GLU B 100 THR B 102 TYR B 108 HOH B 303 SITE 3 AC6 11 HOH B 317 HOH B 324 HOH B 327 SITE 1 AC7 5 GLU A 17 HOH A 355 GLU B 6 HIS B 23 SITE 2 AC7 5 HOH B 346 SITE 1 AC8 5 ALA B 1 HOH B 302 HOH B 305 HOH B 350 SITE 2 AC8 5 HOH B 352 SITE 1 AC9 6 GLN A 77 LEU B 21 ALA B 22 ASN B 71 SITE 2 AC9 6 SER B 73 GOL B 204 SITE 1 AD1 8 THR A 67 ILE A 68 TYR A 69 PRO A 70 SITE 2 AD1 8 HOH A 340 TYR B 69 PRO B 70 ASN B 71 SITE 1 AD2 6 GLN A 77 ALA B 22 HIS B 23 ASN B 24 SITE 2 AD2 6 LEU B 25 GOL B 202 CRYST1 96.660 96.660 54.360 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010346 0.005973 0.000000 0.00000 SCALE2 0.000000 0.011946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018396 0.00000