HEADER ISOMERASE 16-FEB-15 4Y8F TITLE CRYSTAL STRUCTURE OF TRIOSEPHOSPHATE ISOMERASE FROM CLOSTRIDIUM TITLE 2 PERFRINGENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TIM,TRIOSE-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 195102; SOURCE 4 STRAIN: 13 / TYPE A; SOURCE 5 GENE: TPIA, CPE1302; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28B(+) KEYWDS TIM BARREL, ISOMERASE, TPI EXPDTA X-RAY DIFFRACTION AUTHOR S.ROMERO-ROMERO,A.RODRIGUEZ-ROMERO,D.A.FERNANDEZ-VELASCO REVDAT 4 27-SEP-23 4Y8F 1 REMARK REVDAT 3 12-AUG-15 4Y8F 1 JRNL REVDAT 2 05-AUG-15 4Y8F 1 REMARK REVDAT 1 15-JUL-15 4Y8F 0 JRNL AUTH S.ROMERO-ROMERO,M.COSTAS,A.RODRIGUEZ-ROMERO, JRNL AUTH 2 D.ALEJANDRO FERNANDEZ-VELASCO JRNL TITL REVERSIBILITY AND TWO STATE BEHAVIOUR IN THE THERMAL JRNL TITL 2 UNFOLDING OF OLIGOMERIC TIM BARREL PROTEINS. JRNL REF PHYS CHEM CHEM PHYS V. 17 20699 2015 JRNL REFN ESSN 1463-9084 JRNL PMID 26206330 JRNL DOI 10.1039/C5CP01599E REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1313) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 32488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5997 - 3.5241 1.00 2770 155 0.1375 0.1599 REMARK 3 2 3.5241 - 2.7974 1.00 2720 131 0.1371 0.1687 REMARK 3 3 2.7974 - 2.4439 0.99 2704 152 0.1443 0.1824 REMARK 3 4 2.4439 - 2.2205 0.98 2651 154 0.1400 0.1639 REMARK 3 5 2.2205 - 2.0613 0.98 2639 143 0.1452 0.1849 REMARK 3 6 2.0613 - 1.9398 0.98 2646 136 0.1422 0.1996 REMARK 3 7 1.9398 - 1.8427 0.95 2575 120 0.1489 0.1939 REMARK 3 8 1.8427 - 1.7625 0.95 2556 137 0.1467 0.1617 REMARK 3 9 1.7625 - 1.6946 0.94 2520 146 0.1533 0.2118 REMARK 3 10 1.6946 - 1.6361 0.92 2478 127 0.1640 0.2116 REMARK 3 11 1.6361 - 1.5850 0.91 2445 145 0.1900 0.2200 REMARK 3 12 1.5850 - 1.5400 0.79 2124 114 0.2255 0.2839 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2023 REMARK 3 ANGLE : 1.239 2753 REMARK 3 CHIRALITY : 0.083 321 REMARK 3 PLANARITY : 0.005 361 REMARK 3 DIHEDRAL : 13.565 771 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.2353 41.8097 80.9675 REMARK 3 T TENSOR REMARK 3 T11: 0.0891 T22: 0.0774 REMARK 3 T33: 0.0819 T12: 0.0020 REMARK 3 T13: -0.0104 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.8726 L22: 0.7429 REMARK 3 L33: 0.7956 L12: -0.2318 REMARK 3 L13: -0.4504 L23: -0.0664 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: -0.0418 S13: 0.0061 REMARK 3 S21: 0.0697 S22: -0.0129 S23: -0.0305 REMARK 3 S31: -0.0328 S32: 0.1265 S33: 0.0055 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.0482 29.4577 71.7872 REMARK 3 T TENSOR REMARK 3 T11: 0.1883 T22: 0.1012 REMARK 3 T33: 0.1320 T12: 0.0517 REMARK 3 T13: -0.0031 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.3011 L22: 0.2930 REMARK 3 L33: 4.0027 L12: -0.2604 REMARK 3 L13: 1.0309 L23: -1.0707 REMARK 3 S TENSOR REMARK 3 S11: 0.1021 S12: 0.1396 S13: -0.1659 REMARK 3 S21: -0.2512 S22: -0.1275 S23: 0.0741 REMARK 3 S31: 0.3412 S32: 0.2148 S33: 0.0371 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1113 34.2985 75.7915 REMARK 3 T TENSOR REMARK 3 T11: 0.1442 T22: 0.0896 REMARK 3 T33: 0.0994 T12: -0.0041 REMARK 3 T13: -0.0054 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.3832 L22: 0.2426 REMARK 3 L33: 0.9008 L12: -0.0281 REMARK 3 L13: 0.3255 L23: -0.1618 REMARK 3 S TENSOR REMARK 3 S11: 0.0560 S12: -0.0319 S13: -0.0844 REMARK 3 S21: -0.0574 S22: 0.0228 S23: 0.0237 REMARK 3 S31: 0.2922 S32: -0.0743 S33: -0.0683 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4715 50.8456 72.6306 REMARK 3 T TENSOR REMARK 3 T11: 0.0572 T22: 0.0851 REMARK 3 T33: 0.0792 T12: -0.0067 REMARK 3 T13: 0.0031 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.2764 L22: 0.4589 REMARK 3 L33: 1.2208 L12: -0.1497 REMARK 3 L13: 0.0408 L23: 0.3374 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: -0.0240 S13: 0.0334 REMARK 3 S21: -0.0192 S22: -0.0494 S23: -0.0263 REMARK 3 S31: -0.0201 S32: -0.1048 S33: 0.0186 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.5643 55.9775 82.5550 REMARK 3 T TENSOR REMARK 3 T11: 0.0736 T22: 0.0895 REMARK 3 T33: 0.0940 T12: 0.0028 REMARK 3 T13: -0.0046 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.1042 L22: 1.2999 REMARK 3 L33: 1.0154 L12: 0.0685 REMARK 3 L13: 0.4131 L23: 0.1343 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: 0.0723 S13: 0.0750 REMARK 3 S21: 0.0545 S22: 0.0111 S23: -0.1294 REMARK 3 S31: -0.0394 S32: 0.1004 S33: 0.0122 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.0412 57.0444 90.3563 REMARK 3 T TENSOR REMARK 3 T11: 0.1547 T22: 0.0805 REMARK 3 T33: 0.1020 T12: -0.0100 REMARK 3 T13: -0.0292 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 3.8029 L22: 1.0008 REMARK 3 L33: 1.1464 L12: -0.6730 REMARK 3 L13: -0.9876 L23: -0.2113 REMARK 3 S TENSOR REMARK 3 S11: -0.0020 S12: -0.0880 S13: 0.2985 REMARK 3 S21: 0.2678 S22: -0.0325 S23: -0.1630 REMARK 3 S31: -0.1419 S32: 0.0479 S33: 0.0350 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.3587 45.0129 85.7915 REMARK 3 T TENSOR REMARK 3 T11: 0.0924 T22: 0.1038 REMARK 3 T33: 0.1087 T12: -0.0004 REMARK 3 T13: -0.0155 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.5858 L22: 1.0186 REMARK 3 L33: 0.6623 L12: -0.6294 REMARK 3 L13: 0.0649 L23: 0.2976 REMARK 3 S TENSOR REMARK 3 S11: -0.0321 S12: -0.0469 S13: 0.0891 REMARK 3 S21: 0.1044 S22: 0.0241 S23: -0.1687 REMARK 3 S31: 0.0101 S32: 0.1628 S33: 0.0197 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Y8F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : VARIMAX HF REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33930 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 37.589 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.44800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1BTM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 ACETATE PH 4.6, 30% W/V POLYETHYLENE GLYCOL (PEG) 4000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.62750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.77750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.62750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.77750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 80.94029 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 124.94078 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 504 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 515 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 532 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 14 -145.04 53.69 REMARK 500 TYR A 17 130.16 90.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 736 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 759 DISTANCE = 6.79 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 187 OE1 REMARK 620 2 GLU A 187 OE2 46.0 REMARK 620 3 HOH A 601 O 73.3 110.5 REMARK 620 4 HOH A 672 O 144.2 99.0 138.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 225 O REMARK 620 2 LYS A 227 O 92.4 REMARK 620 3 ILE A 230 O 115.1 100.6 REMARK 620 4 HOH A 517 O 95.1 169.9 82.3 REMARK 620 5 HOH A 767 O 133.2 71.2 110.9 98.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Y90 RELATED DB: PDB REMARK 900 RELATED ID: 4Y96 RELATED DB: PDB REMARK 900 RELATED ID: 4Y9A RELATED DB: PDB DBREF 4Y8F A 4 251 UNP Q8XKU1 TPIS_CLOPE 1 248 SEQADV 4Y8F GLY A 1 UNP Q8XKU1 EXPRESSION TAG SEQADV 4Y8F SER A 2 UNP Q8XKU1 EXPRESSION TAG SEQADV 4Y8F HIS A 3 UNP Q8XKU1 EXPRESSION TAG SEQRES 1 A 251 GLY SER HIS MET ARG THR PRO ILE ILE ALA GLY ASN TRP SEQRES 2 A 251 LYS MET HIS TYR THR ILE ASP GLU ALA VAL LYS LEU VAL SEQRES 3 A 251 GLU GLU LEU LYS PRO LEU VAL LYS ASP ALA LYS CYS GLU SEQRES 4 A 251 VAL VAL VAL CYS PRO THR PHE VAL CYS LEU ASP ALA VAL SEQRES 5 A 251 LYS LYS ALA VAL GLU GLY THR ASN ILE LYS VAL GLY ALA SEQRES 6 A 251 GLN ASN MET HIS PHE GLU GLU LYS GLY ALA PHE THR GLY SEQRES 7 A 251 GLU ILE ALA PRO ARG MET LEU GLU ALA MET ASN ILE ASP SEQRES 8 A 251 TYR VAL ILE ILE GLY HIS SER GLU ARG ARG GLU TYR PHE SEQRES 9 A 251 ASN GLU THR ASP GLU THR CYS ASN LYS LYS VAL LYS ALA SEQRES 10 A 251 ALA PHE ALA HIS ASN LEU THR PRO ILE LEU CYS CYS GLY SEQRES 11 A 251 GLU THR LEU GLU GLN ARG GLU ASN GLY THR THR ASN ASP SEQRES 12 A 251 VAL ILE LYS ALA GLN ILE THR ALA ASP LEU GLU GLY LEU SEQRES 13 A 251 THR LYS GLU GLN ALA GLU LYS VAL VAL ILE ALA TYR GLU SEQRES 14 A 251 PRO ILE TRP ALA ILE GLY THR GLY LYS THR ALA THR SER SEQRES 15 A 251 ASP GLN ALA ASN GLU THR ILE ALA ALA ILE ARG ALA MET SEQRES 16 A 251 VAL ALA GLU MET PHE GLY GLN GLU VAL ALA ASP LYS VAL SEQRES 17 A 251 ARG ILE GLN TYR GLY GLY SER VAL LYS PRO ASN THR ILE SEQRES 18 A 251 ALA GLU GLN MET ALA LYS SER ASP ILE ASP GLY ALA LEU SEQRES 19 A 251 VAL GLY GLY ALA SER LEU VAL ALA ALA ASP PHE ALA GLN SEQRES 20 A 251 ILE VAL ASN TYR HET ACT A 301 4 HET ACT A 302 4 HET NA A 303 1 HET NA A 304 1 HET NA A 305 1 HETNAM ACT ACETATE ION HETNAM NA SODIUM ION FORMUL 2 ACT 2(C2 H3 O2 1-) FORMUL 4 NA 3(NA 1+) FORMUL 7 HOH *372(H2 O) HELIX 1 AA1 THR A 18 LYS A 34 1 17 HELIX 2 AA2 THR A 45 VAL A 47 5 3 HELIX 3 AA3 CYS A 48 VAL A 56 1 9 HELIX 4 AA4 ALA A 81 MET A 88 1 8 HELIX 5 AA5 HIS A 97 PHE A 104 1 8 HELIX 6 AA6 THR A 107 HIS A 121 1 15 HELIX 7 AA7 THR A 132 ASN A 138 1 7 HELIX 8 AA8 THR A 140 LEU A 153 1 14 HELIX 9 AA9 THR A 157 GLU A 162 1 6 HELIX 10 AB1 PRO A 170 ILE A 174 5 5 HELIX 11 AB2 THR A 181 GLY A 201 1 21 HELIX 12 AB3 GLY A 201 VAL A 208 1 8 HELIX 13 AB4 THR A 220 ALA A 226 1 7 HELIX 14 AB5 GLY A 236 LEU A 240 5 5 HELIX 15 AB6 VAL A 241 ASN A 250 1 10 SHEET 1 AA1 9 ILE A 8 ASN A 12 0 SHEET 2 AA1 9 GLU A 39 CYS A 43 1 O VAL A 41 N GLY A 11 SHEET 3 AA1 9 ILE A 61 ALA A 65 1 O LYS A 62 N VAL A 40 SHEET 4 AA1 9 TYR A 92 ILE A 95 1 O ILE A 94 N ALA A 65 SHEET 5 AA1 9 THR A 124 CYS A 129 1 O ILE A 126 N ILE A 95 SHEET 6 AA1 9 VAL A 165 TYR A 168 1 O ALA A 167 N LEU A 127 SHEET 7 AA1 9 ARG A 209 TYR A 212 1 O GLN A 211 N ILE A 166 SHEET 8 AA1 9 GLY A 232 VAL A 235 1 O GLY A 232 N TYR A 212 SHEET 9 AA1 9 ILE A 8 ASN A 12 1 N ASN A 12 O VAL A 235 LINK OE1 GLU A 187 NA NA A 304 1555 1555 2.49 LINK OE2 GLU A 187 NA NA A 304 1555 1555 3.02 LINK O SER A 215 NA NA A 305 1555 1555 2.61 LINK O MET A 225 NA NA A 303 1555 1555 2.49 LINK O LYS A 227 NA NA A 303 1555 1555 2.73 LINK O ILE A 230 NA NA A 303 1555 1555 2.39 LINK NA NA A 303 O HOH A 517 1555 1555 2.39 LINK NA NA A 303 O HOH A 767 1555 1555 2.18 LINK NA NA A 304 O HOH A 601 1555 1555 2.87 LINK NA NA A 304 O HOH A 672 1555 1555 2.51 SITE 1 AC1 6 HIS A 16 TYR A 17 LYS A 73 ARG A 83 SITE 2 AC1 6 HOH A 404 HOH A 427 SITE 1 AC2 4 GLU A 154 GLY A 155 LEU A 156 HOH A 416 SITE 1 AC3 5 MET A 225 LYS A 227 ILE A 230 HOH A 517 SITE 2 AC3 5 HOH A 767 SITE 1 AC4 4 GLN A 184 GLU A 187 HOH A 601 HOH A 672 SITE 1 AC5 3 THR A 179 SER A 215 GLN A 224 CRYST1 75.255 49.555 71.502 90.00 119.11 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013288 0.000000 0.007399 0.00000 SCALE2 0.000000 0.020180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016007 0.00000