HEADER OXIDOREDUCTASE 17-FEB-15 4Y98 TITLE CRYSTAL STRUCTURE OF LIGD-APO FORM FROM SPHINGOBIUM SP. STRAIN SYK-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C ALPHA-DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOBIUM SP. SYK-6; SOURCE 3 ORGANISM_TAXID: 627192; SOURCE 4 GENE: LIGD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SHORT CHAIN DEHYDROGENASE/REDUCTASE SDR FAMILY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.PEREIRA,R.P.MCANDREW,R.A.HEINS,K.L.SALE,B.A.SIMMONS,P.D.ADAMS REVDAT 4 28-FEB-24 4Y98 1 JRNL REMARK REVDAT 3 01-JUN-16 4Y98 1 JRNL REVDAT 2 16-MAR-16 4Y98 1 SOURCE REVDAT 1 09-MAR-16 4Y98 0 JRNL AUTH J.H.PEREIRA,R.A.HEINS,D.L.GALL,R.P.MCANDREW,K.DENG, JRNL AUTH 2 K.C.HOLLAND,T.J.DONOHUE,D.R.NOGUERA,B.A.SIMMONS,K.L.SALE, JRNL AUTH 3 J.RALPH,P.D.ADAMS JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF THE EARLY AND JRNL TITL 2 LATE ENZYMES IN THE LIGNIN BETA-ARYL ETHER CLEAVAGE PATHWAY JRNL TITL 3 FROM SPHINGOBIUM SP. SYK-6. JRNL REF J.BIOL.CHEM. V. 291 10228 2016 JRNL REFN ESSN 1083-351X JRNL PMID 26940872 JRNL DOI 10.1074/JBC.M115.700427 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1839 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 8829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.720 REMARK 3 FREE R VALUE TEST SET COUNT : 417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3972 - 3.8190 0.99 2956 142 0.1744 0.2169 REMARK 3 2 3.8190 - 3.0313 0.97 2781 126 0.2459 0.2764 REMARK 3 3 3.0313 - 2.6482 0.97 2675 149 0.3286 0.3995 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1754 REMARK 3 ANGLE : 0.939 2376 REMARK 3 CHIRALITY : 0.033 269 REMARK 3 PLANARITY : 0.004 314 REMARK 3 DIHEDRAL : 15.164 624 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2378 -20.2742 21.5810 REMARK 3 T TENSOR REMARK 3 T11: 0.9757 T22: 0.8603 REMARK 3 T33: 0.9617 T12: -0.0189 REMARK 3 T13: -0.0505 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.3788 L22: 0.2293 REMARK 3 L33: 0.1220 L12: 0.3263 REMARK 3 L13: 0.0621 L23: 0.0467 REMARK 3 S TENSOR REMARK 3 S11: 0.1284 S12: -0.1683 S13: -0.2113 REMARK 3 S21: -0.4847 S22: -0.2054 S23: 0.3117 REMARK 3 S31: 0.4528 S32: -0.6804 S33: -0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.3158 -23.8447 24.3694 REMARK 3 T TENSOR REMARK 3 T11: 0.9997 T22: 0.9360 REMARK 3 T33: 0.8769 T12: -0.0900 REMARK 3 T13: 0.1283 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 0.4383 L22: 0.2228 REMARK 3 L33: 0.2979 L12: 0.1214 REMARK 3 L13: 0.1271 L23: -0.2232 REMARK 3 S TENSOR REMARK 3 S11: -0.1253 S12: 0.4703 S13: 0.1753 REMARK 3 S21: 0.5254 S22: -0.0801 S23: -0.1292 REMARK 3 S31: 1.0857 S32: -0.2888 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4302 -31.9550 23.5724 REMARK 3 T TENSOR REMARK 3 T11: 1.2132 T22: 0.9769 REMARK 3 T33: 0.9989 T12: -0.2305 REMARK 3 T13: 0.0389 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.4312 L22: 0.4072 REMARK 3 L33: 0.4142 L12: -0.1604 REMARK 3 L13: -0.0990 L23: -0.3474 REMARK 3 S TENSOR REMARK 3 S11: -0.7018 S12: -0.2445 S13: -0.4431 REMARK 3 S21: 0.1980 S22: 0.3299 S23: 0.2933 REMARK 3 S31: -0.2901 S32: -0.4259 S33: -0.0052 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5255 -28.2402 9.7623 REMARK 3 T TENSOR REMARK 3 T11: 0.9020 T22: 0.8137 REMARK 3 T33: 0.8662 T12: -0.1653 REMARK 3 T13: 0.0557 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: -0.0061 L22: -0.1166 REMARK 3 L33: 3.7198 L12: -0.3160 REMARK 3 L13: -0.2780 L23: -0.0966 REMARK 3 S TENSOR REMARK 3 S11: -0.2607 S12: -0.1960 S13: -0.0412 REMARK 3 S21: 0.0847 S22: 0.1125 S23: 0.0348 REMARK 3 S31: 0.5417 S32: -0.5424 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.4724 -19.3162 7.4471 REMARK 3 T TENSOR REMARK 3 T11: 1.0367 T22: 0.6985 REMARK 3 T33: 0.9091 T12: -0.0453 REMARK 3 T13: -0.0160 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.8211 L22: -0.1391 REMARK 3 L33: 0.4003 L12: -0.1657 REMARK 3 L13: -0.1926 L23: 0.2482 REMARK 3 S TENSOR REMARK 3 S11: -0.2367 S12: 0.0722 S13: 0.0794 REMARK 3 S21: 0.0719 S22: 0.1113 S23: 0.0581 REMARK 3 S31: 0.0819 S32: -0.5091 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9036 -13.2772 17.6058 REMARK 3 T TENSOR REMARK 3 T11: 1.1426 T22: 0.7634 REMARK 3 T33: 0.9796 T12: -0.1024 REMARK 3 T13: -0.1009 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 0.3116 L22: 0.0457 REMARK 3 L33: 0.1604 L12: 0.1720 REMARK 3 L13: -0.1009 L23: 0.0027 REMARK 3 S TENSOR REMARK 3 S11: -0.2960 S12: -0.5862 S13: 0.4289 REMARK 3 S21: 0.2193 S22: 0.1463 S23: -0.1645 REMARK 3 S31: -0.7971 S32: 0.0549 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 252 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.0840 -12.1466 -0.2585 REMARK 3 T TENSOR REMARK 3 T11: 0.9966 T22: 0.8754 REMARK 3 T33: 1.0342 T12: -0.3155 REMARK 3 T13: 0.0322 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.3485 L22: 0.2010 REMARK 3 L33: 0.0322 L12: -0.3819 REMARK 3 L13: 0.0325 L23: -0.0473 REMARK 3 S TENSOR REMARK 3 S11: -0.0155 S12: -0.1214 S13: 0.2074 REMARK 3 S21: 0.0060 S22: -0.0370 S23: -0.3231 REMARK 3 S31: 0.1021 S32: 0.5642 S33: -0.0006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Y98 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207067. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9044 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 49.389 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 1.5 M LITHIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.88633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 89.77267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 89.77267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.88633 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 91.95150 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 -53.08822 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 191 REMARK 465 SER A 192 REMARK 465 ASN A 193 REMARK 465 ILE A 194 REMARK 465 ALA A 195 REMARK 465 GLU A 196 REMARK 465 ALA A 197 REMARK 465 SER A 198 REMARK 465 ARG A 199 REMARK 465 LEU A 200 REMARK 465 ARG A 201 REMARK 465 PRO A 202 REMARK 465 ALA A 203 REMARK 465 LYS A 204 REMARK 465 TYR A 205 REMARK 465 GLY A 206 REMARK 465 THR A 207 REMARK 465 SER A 208 REMARK 465 GLY A 209 REMARK 465 TYR A 210 REMARK 465 VAL A 211 REMARK 465 GLU A 212 REMARK 465 ASN A 213 REMARK 465 GLU A 214 REMARK 465 GLU A 215 REMARK 465 SER A 216 REMARK 465 ILE A 217 REMARK 465 ALA A 218 REMARK 465 SER A 219 REMARK 465 LEU A 220 REMARK 465 HIS A 221 REMARK 465 SER A 222 REMARK 465 ILE A 223 REMARK 465 HIS A 224 REMARK 465 GLN A 225 REMARK 465 GLU A 273 REMARK 465 SER A 274 REMARK 465 ASP A 275 REMARK 465 PRO A 276 REMARK 465 GLU A 277 REMARK 465 GLY A 278 REMARK 465 ALA A 279 REMARK 465 ARG A 280 REMARK 465 GLN A 281 REMARK 465 ARG A 282 REMARK 465 VAL A 283 REMARK 465 GLU A 284 REMARK 465 ALA A 285 REMARK 465 LEU A 286 REMARK 465 MET A 287 REMARK 465 ALA A 288 REMARK 465 TRP A 289 REMARK 465 GLY A 290 REMARK 465 ARG A 291 REMARK 465 ASP A 292 REMARK 465 ARG A 293 REMARK 465 THR A 294 REMARK 465 ARG A 295 REMARK 465 VAL A 296 REMARK 465 PHE A 297 REMARK 465 ALA A 298 REMARK 465 GLU A 299 REMARK 465 GLY A 300 REMARK 465 ASP A 301 REMARK 465 LYS A 302 REMARK 465 LYS A 303 REMARK 465 GLY A 304 REMARK 465 ALA A 305 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 226 CB CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS A 138 HG SER A 183 1.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 143 -122.03 -94.44 REMARK 500 MET A 149 108.74 -163.19 REMARK 500 ASN A 189 69.06 -113.48 REMARK 500 PRO A 250 49.41 -80.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Y9D RELATED DB: PDB DBREF 4Y98 A 1 305 UNP G2IN91 G2IN91_9SPHN 1 305 SEQRES 1 A 305 MET LYS ASP PHE GLN ASP GLN VAL ALA PHE ILE THR GLY SEQRES 2 A 305 GLY ALA SER GLY ALA GLY PHE GLY GLN ALA LYS VAL PHE SEQRES 3 A 305 GLY GLN ALA GLY ALA LYS ILE VAL VAL ALA ASP VAL ARG SEQRES 4 A 305 ALA GLU ALA VAL GLU LYS ALA VAL ALA GLU LEU GLU GLY SEQRES 5 A 305 LEU GLY ILE THR ALA HIS GLY ILE VAL LEU ASP ILE MET SEQRES 6 A 305 ASP ARG GLU ALA TYR ALA ARG ALA ALA ASP GLU VAL GLU SEQRES 7 A 305 ALA VAL PHE GLY GLN ALA PRO THR LEU LEU SER ASN THR SEQRES 8 A 305 ALA GLY VAL ASN SER PHE GLY PRO ILE GLU LYS THR THR SEQRES 9 A 305 TYR ASP ASP PHE ASP TRP ILE ILE GLY VAL ASN LEU ASN SEQRES 10 A 305 GLY VAL ILE ASN GLY MET VAL THR PHE VAL PRO ARG MET SEQRES 11 A 305 ILE ALA SER GLY ARG PRO GLY HIS ILE VAL THR VAL SER SEQRES 12 A 305 SER LEU GLY GLY PHE MET GLY SER ALA LEU ALA GLY PRO SEQRES 13 A 305 TYR SER ALA ALA LYS ALA ALA SER ILE ASN LEU MET GLU SEQRES 14 A 305 GLY TYR ARG GLN GLY LEU GLU LYS TYR GLY ILE GLY VAL SEQRES 15 A 305 SER VAL CYS THR PRO ALA ASN ILE LYS SER ASN ILE ALA SEQRES 16 A 305 GLU ALA SER ARG LEU ARG PRO ALA LYS TYR GLY THR SER SEQRES 17 A 305 GLY TYR VAL GLU ASN GLU GLU SER ILE ALA SER LEU HIS SEQRES 18 A 305 SER ILE HIS GLN HIS GLY LEU GLU PRO GLU LYS LEU ALA SEQRES 19 A 305 GLU ALA ILE LYS LYS GLY VAL GLU ASP ASN ALA LEU TYR SEQRES 20 A 305 ILE ILE PRO TYR PRO GLU VAL ARG GLU GLY LEU GLU LYS SEQRES 21 A 305 HIS PHE GLN ALA ILE ILE ASP SER VAL ALA PRO MET GLU SEQRES 22 A 305 SER ASP PRO GLU GLY ALA ARG GLN ARG VAL GLU ALA LEU SEQRES 23 A 305 MET ALA TRP GLY ARG ASP ARG THR ARG VAL PHE ALA GLU SEQRES 24 A 305 GLY ASP LYS LYS GLY ALA HELIX 1 AA1 SER A 16 GLN A 28 1 13 HELIX 2 AA2 ARG A 39 GLY A 52 1 14 HELIX 3 AA3 ASP A 66 GLY A 82 1 17 HELIX 4 AA4 PRO A 99 THR A 103 5 5 HELIX 5 AA5 THR A 104 LEU A 116 1 13 HELIX 6 AA6 LEU A 116 GLY A 134 1 19 HELIX 7 AA7 SER A 144 MET A 149 5 6 HELIX 8 AA8 ALA A 154 GLU A 176 1 23 HELIX 9 AA9 GLU A 229 ASN A 244 1 16 HELIX 10 AB1 TYR A 251 GLU A 253 5 3 HELIX 11 AB2 VAL A 254 VAL A 269 1 16 SHEET 1 AA1 7 ALA A 57 VAL A 61 0 SHEET 2 AA1 7 LYS A 32 ASP A 37 1 N VAL A 35 O ILE A 60 SHEET 3 AA1 7 VAL A 8 THR A 12 1 N ALA A 9 O VAL A 34 SHEET 4 AA1 7 LEU A 87 ASN A 90 1 O LEU A 87 N PHE A 10 SHEET 5 AA1 7 GLY A 137 VAL A 142 1 O VAL A 140 N LEU A 88 SHEET 6 AA1 7 ILE A 180 CYS A 185 1 O CYS A 185 N THR A 141 SHEET 7 AA1 7 TYR A 247 ILE A 248 1 O ILE A 248 N VAL A 184 CISPEP 1 PRO A 271 MET A 272 0 3.04 CRYST1 61.301 61.301 134.659 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016313 0.009418 0.000000 0.00000 SCALE2 0.000000 0.018837 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007426 0.00000