data_4Y9C # _entry.id 4Y9C # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.321 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4Y9C WWPDB D_1000207074 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 4PWE unspecified PDB . 4Y9B unspecified PDB . 4Y9E unspecified PDB . 4Y9F unspecified PDB . 4Y9G unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4Y9C _pdbx_database_status.recvd_initial_deposition_date 2015-02-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yokoyama, T.' 1 'Mizuguchi, M.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2045-2322 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 5 _citation.language ? _citation.page_first 13570 _citation.page_last 13570 _citation.title 'Discovery of gamma-Mangostin as an Amyloidogenesis Inhibitor' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/srep13570 _citation.pdbx_database_id_PubMed 26310724 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yokoyama, T.' 1 ? primary 'Ueda, M.' 2 ? primary 'Ando, Y.' 3 ? primary 'Mizuguchi, M.' 4 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 4Y9C _cell.details ? _cell.formula_units_Z ? _cell.length_a 43.089 _cell.length_a_esd ? _cell.length_b 85.624 _cell.length_b_esd ? _cell.length_c 63.552 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 4Y9C _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Transthyretin 17342.582 2 ? V30M ? ? 2 non-polymer syn '1,3,6-trihydroxy-7-methoxy-2,8-bis(3-methylbut-2-en-1-yl)-9H-xanthen-9-one' 410.460 2 ? ? ? ? 3 non-polymer syn 'BROMIDE ION' 79.904 6 ? ? ? ? 4 water nat water 18.015 173 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ATTR,Prealbumin,TBPA # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MRGSHHHHHHGSMASHRLLLLCLAGLVFVSEAGPTGTGESKCPLMVKVLDAVRGSPAINVAMHVFRKAADDTWEPFASGK TSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _entity_poly.pdbx_seq_one_letter_code_can ;MRGSHHHHHHGSMASHRLLLLCLAGLVFVSEAGPTGTGESKCPLMVKVLDAVRGSPAINVAMHVFRKAADDTWEPFASGK TSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 GLY n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 GLY n 1 12 SER n 1 13 MET n 1 14 ALA n 1 15 SER n 1 16 HIS n 1 17 ARG n 1 18 LEU n 1 19 LEU n 1 20 LEU n 1 21 LEU n 1 22 CYS n 1 23 LEU n 1 24 ALA n 1 25 GLY n 1 26 LEU n 1 27 VAL n 1 28 PHE n 1 29 VAL n 1 30 SER n 1 31 GLU n 1 32 ALA n 1 33 GLY n 1 34 PRO n 1 35 THR n 1 36 GLY n 1 37 THR n 1 38 GLY n 1 39 GLU n 1 40 SER n 1 41 LYS n 1 42 CYS n 1 43 PRO n 1 44 LEU n 1 45 MET n 1 46 VAL n 1 47 LYS n 1 48 VAL n 1 49 LEU n 1 50 ASP n 1 51 ALA n 1 52 VAL n 1 53 ARG n 1 54 GLY n 1 55 SER n 1 56 PRO n 1 57 ALA n 1 58 ILE n 1 59 ASN n 1 60 VAL n 1 61 ALA n 1 62 MET n 1 63 HIS n 1 64 VAL n 1 65 PHE n 1 66 ARG n 1 67 LYS n 1 68 ALA n 1 69 ALA n 1 70 ASP n 1 71 ASP n 1 72 THR n 1 73 TRP n 1 74 GLU n 1 75 PRO n 1 76 PHE n 1 77 ALA n 1 78 SER n 1 79 GLY n 1 80 LYS n 1 81 THR n 1 82 SER n 1 83 GLU n 1 84 SER n 1 85 GLY n 1 86 GLU n 1 87 LEU n 1 88 HIS n 1 89 GLY n 1 90 LEU n 1 91 THR n 1 92 THR n 1 93 GLU n 1 94 GLU n 1 95 GLU n 1 96 PHE n 1 97 VAL n 1 98 GLU n 1 99 GLY n 1 100 ILE n 1 101 TYR n 1 102 LYS n 1 103 VAL n 1 104 GLU n 1 105 ILE n 1 106 ASP n 1 107 THR n 1 108 LYS n 1 109 SER n 1 110 TYR n 1 111 TRP n 1 112 LYS n 1 113 ALA n 1 114 LEU n 1 115 GLY n 1 116 ILE n 1 117 SER n 1 118 PRO n 1 119 PHE n 1 120 HIS n 1 121 GLU n 1 122 HIS n 1 123 ALA n 1 124 GLU n 1 125 VAL n 1 126 VAL n 1 127 PHE n 1 128 THR n 1 129 ALA n 1 130 ASN n 1 131 ASP n 1 132 SER n 1 133 GLY n 1 134 PRO n 1 135 ARG n 1 136 ARG n 1 137 TYR n 1 138 THR n 1 139 ILE n 1 140 ALA n 1 141 ALA n 1 142 LEU n 1 143 LEU n 1 144 SER n 1 145 PRO n 1 146 TYR n 1 147 SER n 1 148 TYR n 1 149 SER n 1 150 THR n 1 151 THR n 1 152 ALA n 1 153 VAL n 1 154 VAL n 1 155 THR n 1 156 ASN n 1 157 PRO n 1 158 LYS n 1 159 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 159 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TTR, PALB' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain M-30 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pQE-30 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TTHY_HUMAN _struct_ref.pdbx_db_accession P02766 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MASHRLLLLCLAGLVFVSEAGPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTT EEEFVEGIYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4Y9C A 13 ? 159 ? P02766 1 ? 147 ? -19 127 2 1 4Y9C B 13 ? 159 ? P02766 1 ? 147 ? -19 127 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4Y9C MET A 1 ? UNP P02766 ? ? 'expression tag' -31 1 1 4Y9C ARG A 2 ? UNP P02766 ? ? 'expression tag' -30 2 1 4Y9C GLY A 3 ? UNP P02766 ? ? 'expression tag' -29 3 1 4Y9C SER A 4 ? UNP P02766 ? ? 'expression tag' -28 4 1 4Y9C HIS A 5 ? UNP P02766 ? ? 'expression tag' -27 5 1 4Y9C HIS A 6 ? UNP P02766 ? ? 'expression tag' -26 6 1 4Y9C HIS A 7 ? UNP P02766 ? ? 'expression tag' -25 7 1 4Y9C HIS A 8 ? UNP P02766 ? ? 'expression tag' -24 8 1 4Y9C HIS A 9 ? UNP P02766 ? ? 'expression tag' -23 9 1 4Y9C HIS A 10 ? UNP P02766 ? ? 'expression tag' -22 10 1 4Y9C GLY A 11 ? UNP P02766 ? ? 'expression tag' -21 11 1 4Y9C SER A 12 ? UNP P02766 ? ? 'expression tag' -20 12 1 4Y9C MET A 62 ? UNP P02766 VAL 50 'engineered mutation' 30 13 2 4Y9C MET B 1 ? UNP P02766 ? ? 'expression tag' -31 14 2 4Y9C ARG B 2 ? UNP P02766 ? ? 'expression tag' -30 15 2 4Y9C GLY B 3 ? UNP P02766 ? ? 'expression tag' -29 16 2 4Y9C SER B 4 ? UNP P02766 ? ? 'expression tag' -28 17 2 4Y9C HIS B 5 ? UNP P02766 ? ? 'expression tag' -27 18 2 4Y9C HIS B 6 ? UNP P02766 ? ? 'expression tag' -26 19 2 4Y9C HIS B 7 ? UNP P02766 ? ? 'expression tag' -25 20 2 4Y9C HIS B 8 ? UNP P02766 ? ? 'expression tag' -24 21 2 4Y9C HIS B 9 ? UNP P02766 ? ? 'expression tag' -23 22 2 4Y9C HIS B 10 ? UNP P02766 ? ? 'expression tag' -22 23 2 4Y9C GLY B 11 ? UNP P02766 ? ? 'expression tag' -21 24 2 4Y9C SER B 12 ? UNP P02766 ? ? 'expression tag' -20 25 2 4Y9C MET B 62 ? UNP P02766 VAL 50 'engineered mutation' 30 26 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BR non-polymer . 'BROMIDE ION' ? 'Br -1' 79.904 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MKS non-polymer . '1,3,6-trihydroxy-7-methoxy-2,8-bis(3-methylbut-2-en-1-yl)-9H-xanthen-9-one' alpha-Mangostin 'C24 H26 O6' 410.460 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4Y9C _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.69 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 27.22 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.8 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '20% PEG400, 0.092 M MES, 0.1 M KBr' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 270' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-11-21 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91714 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NE3A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.91714 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline AR-NE3A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4Y9C _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.49 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 38146 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.3 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.2 _reflns.pdbx_Rmerge_I_obs 0.109 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 24.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.49 _reflns_shell.d_res_low 1.53 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 95.2 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.445 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.67 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][2] -0.37 _refine.aniso_B[2][3] -0.00 _refine.aniso_B[3][3] -0.30 _refine.B_iso_max ? _refine.B_iso_mean 21.216 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.940 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4Y9C _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.49 _refine.ls_d_res_low 28.54 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 35222 _refine.ls_number_reflns_R_free 1848 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.29 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.20601 _refine.ls_R_factor_R_free 0.24044 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.20414 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4PWE _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.086 _refine.pdbx_overall_ESU_R_Free 0.089 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 1.908 _refine.overall_SU_ML 0.067 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 1758 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 66 _refine_hist.number_atoms_solvent 173 _refine_hist.number_atoms_total 1997 _refine_hist.d_res_high 1.49 _refine_hist.d_res_low 28.54 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.019 0.019 1900 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.119 1.975 2605 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.267 5.000 238 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 31.053 23.867 75 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 15.604 15.000 292 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 16.838 15.000 7 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.154 0.200 289 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.013 0.021 1457 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.494 _refine_ls_shell.d_res_low 1.533 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 108 _refine_ls_shell.number_reflns_R_work 2259 _refine_ls_shell.percent_reflns_obs 83.76 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.357 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.389 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 4Y9C _struct.title 'Crystal structure of V30M mutated transthyretin with bromide in complex with alpha-mangostin' _struct.pdbx_descriptor transthyretin _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4Y9C _struct_keywords.text 'transthyretin, natural product, inhibitor, transporter, TRANSPORT PROTEIN-INHIBITOR complex' _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN/INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 2 ? J N N 3 ? K N N 4 ? L N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 106 ? LEU A 114 ? ASP A 74 LEU A 82 1 ? 9 HELX_P HELX_P2 AA2 ASP B 106 ? LEU B 114 ? ASP B 74 LEU B 82 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 8 ? AA2 ? 8 ? AA3 ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? parallel AA1 7 8 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? parallel AA2 7 8 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel AA3 6 7 ? anti-parallel AA3 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 55 ? PRO A 56 ? SER A 23 PRO A 24 AA1 2 LEU A 44 ? ASP A 50 ? LEU A 12 ASP A 18 AA1 3 ARG A 136 ? SER A 144 ? ARG A 104 SER A 112 AA1 4 SER A 147 ? THR A 155 ? SER A 115 THR A 123 AA1 5 SER B 147 ? VAL B 154 ? SER B 115 VAL B 122 AA1 6 TYR B 137 ? SER B 144 ? TYR B 105 SER B 112 AA1 7 LEU B 44 ? ASP B 50 ? LEU B 12 ASP B 18 AA1 8 SER B 55 ? PRO B 56 ? SER B 23 PRO B 24 AA2 1 GLU A 86 ? LEU A 87 ? GLU A 54 LEU A 55 AA2 2 LEU A 44 ? ASP A 50 ? LEU A 12 ASP A 18 AA2 3 ARG A 136 ? SER A 144 ? ARG A 104 SER A 112 AA2 4 SER A 147 ? THR A 155 ? SER A 115 THR A 123 AA2 5 SER B 147 ? VAL B 154 ? SER B 115 VAL B 122 AA2 6 TYR B 137 ? SER B 144 ? TYR B 105 SER B 112 AA2 7 LEU B 44 ? ASP B 50 ? LEU B 12 ASP B 18 AA2 8 GLU B 86 ? LEU B 87 ? GLU B 54 LEU B 55 AA3 1 TRP A 73 ? LYS A 80 ? TRP A 41 LYS A 48 AA3 2 ALA A 61 ? LYS A 67 ? ALA A 29 LYS A 35 AA3 3 GLY A 99 ? ILE A 105 ? GLY A 67 ILE A 73 AA3 4 HIS A 120 ? ALA A 129 ? HIS A 88 ALA A 97 AA3 5 HIS B 120 ? ALA B 129 ? HIS B 88 ALA B 97 AA3 6 GLY B 99 ? ILE B 105 ? GLY B 67 ILE B 73 AA3 7 ALA B 61 ? LYS B 67 ? ALA B 29 LYS B 35 AA3 8 TRP B 73 ? LYS B 80 ? TRP B 41 LYS B 48 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O SER A 55 ? O SER A 23 N ASP A 50 ? N ASP A 18 AA1 2 3 N LYS A 47 ? N LYS A 15 O ILE A 139 ? O ILE A 107 AA1 3 4 N ALA A 140 ? N ALA A 108 O THR A 151 ? O THR A 119 AA1 4 5 N TYR A 148 ? N TYR A 116 O THR B 150 ? O THR B 118 AA1 5 6 O THR B 151 ? O THR B 119 N ALA B 140 ? N ALA B 108 AA1 6 7 O LEU B 143 ? O LEU B 111 N LEU B 49 ? N LEU B 17 AA1 7 8 N ASP B 50 ? N ASP B 18 O SER B 55 ? O SER B 23 AA2 1 2 O LEU A 87 ? O LEU A 55 N VAL A 46 ? N VAL A 14 AA2 2 3 N LYS A 47 ? N LYS A 15 O ILE A 139 ? O ILE A 107 AA2 3 4 N ALA A 140 ? N ALA A 108 O THR A 151 ? O THR A 119 AA2 4 5 N TYR A 148 ? N TYR A 116 O THR B 150 ? O THR B 118 AA2 5 6 O THR B 151 ? O THR B 119 N ALA B 140 ? N ALA B 108 AA2 6 7 O LEU B 143 ? O LEU B 111 N LEU B 49 ? N LEU B 17 AA2 7 8 N VAL B 46 ? N VAL B 14 O LEU B 87 ? O LEU B 55 AA3 1 2 O ALA A 77 ? O ALA A 45 N VAL A 64 ? N VAL A 32 AA3 2 3 N HIS A 63 ? N HIS A 31 O GLU A 104 ? O GLU A 72 AA3 3 4 N ILE A 105 ? N ILE A 73 O ALA A 123 ? O ALA A 91 AA3 4 5 N GLU A 121 ? N GLU A 89 O VAL B 126 ? O VAL B 94 AA3 5 6 O ALA B 123 ? O ALA B 91 N ILE B 105 ? N ILE B 73 AA3 6 7 O GLU B 104 ? O GLU B 72 N HIS B 63 ? N HIS B 31 AA3 7 8 N VAL B 64 ? N VAL B 32 O ALA B 77 ? O ALA B 45 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MKS 201 ? 15 'binding site for residue MKS A 201' AC2 Software A BR 202 ? 1 'binding site for residue BR A 202' AC3 Software A BR 203 ? 3 'binding site for residue BR A 203' AC4 Software A BR 204 ? 1 'binding site for residue BR A 204' AC5 Software B BR 201 ? 3 'binding site for residue BR B 201' AC6 Software B MKS 202 ? 15 'binding site for residue MKS B 202' AC7 Software B BR 203 ? 2 'binding site for residue BR B 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 LYS A 47 ? LYS A 15 . ? 2_455 ? 2 AC1 15 LEU A 49 ? LEU A 17 . ? 2_455 ? 3 AC1 15 THR A 138 ? THR A 106 . ? 1_555 ? 4 AC1 15 ALA A 140 ? ALA A 108 . ? 1_555 ? 5 AC1 15 ALA A 140 ? ALA A 108 . ? 2_455 ? 6 AC1 15 LEU A 142 ? LEU A 110 . ? 1_555 ? 7 AC1 15 LEU A 142 ? LEU A 110 . ? 2_455 ? 8 AC1 15 SER A 149 ? SER A 117 . ? 2_455 ? 9 AC1 15 SER A 149 ? SER A 117 . ? 1_555 ? 10 AC1 15 THR A 151 ? THR A 119 . ? 2_455 ? 11 AC1 15 THR A 151 ? THR A 119 . ? 1_555 ? 12 AC1 15 VAL A 153 ? VAL A 121 . ? 1_555 ? 13 AC1 15 BR D . ? BR A 202 . ? 2_455 ? 14 AC1 15 HOH K . ? HOH A 324 . ? 1_555 ? 15 AC1 15 HOH K . ? HOH A 324 . ? 2_455 ? 16 AC2 1 MKS C . ? MKS A 201 . ? 2_455 ? 17 AC3 3 LYS A 67 ? LYS A 35 . ? 1_555 ? 18 AC3 3 HIS B 122 ? HIS B 90 . ? 1_555 ? 19 AC3 3 HOH L . ? HOH B 359 . ? 1_555 ? 20 AC4 1 HIS A 63 ? HIS A 31 . ? 1_555 ? 21 AC5 3 HIS A 122 ? HIS A 90 . ? 1_555 ? 22 AC5 3 HOH K . ? HOH A 305 . ? 1_555 ? 23 AC5 3 LYS B 67 ? LYS B 35 . ? 1_555 ? 24 AC6 15 LYS B 47 ? LYS B 15 . ? 1_555 ? 25 AC6 15 LEU B 49 ? LEU B 17 . ? 1_555 ? 26 AC6 15 ALA B 140 ? ALA B 108 . ? 2_455 ? 27 AC6 15 ALA B 140 ? ALA B 108 . ? 1_555 ? 28 AC6 15 LEU B 142 ? LEU B 110 . ? 2_455 ? 29 AC6 15 SER B 149 ? SER B 117 . ? 1_555 ? 30 AC6 15 SER B 149 ? SER B 117 . ? 2_455 ? 31 AC6 15 THR B 150 ? THR B 118 . ? 2_455 ? 32 AC6 15 THR B 151 ? THR B 119 . ? 1_555 ? 33 AC6 15 THR B 151 ? THR B 119 . ? 2_455 ? 34 AC6 15 VAL B 153 ? VAL B 121 . ? 2_455 ? 35 AC6 15 BR J . ? BR B 203 . ? 2_455 ? 36 AC6 15 HOH L . ? HOH B 311 . ? 1_555 ? 37 AC6 15 HOH L . ? HOH B 311 . ? 2_455 ? 38 AC6 15 HOH L . ? HOH B 343 . ? 2_455 ? 39 AC7 2 LYS B 47 ? LYS B 15 . ? 2_455 ? 40 AC7 2 MKS I . ? MKS B 202 . ? 2_455 ? # _atom_sites.entry_id 4Y9C _atom_sites.fract_transf_matrix[1][1] 0.023208 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011679 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015735 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -31 ? ? ? A . n A 1 2 ARG 2 -30 ? ? ? A . n A 1 3 GLY 3 -29 ? ? ? A . n A 1 4 SER 4 -28 ? ? ? A . n A 1 5 HIS 5 -27 ? ? ? A . n A 1 6 HIS 6 -26 ? ? ? A . n A 1 7 HIS 7 -25 ? ? ? A . n A 1 8 HIS 8 -24 ? ? ? A . n A 1 9 HIS 9 -23 ? ? ? A . n A 1 10 HIS 10 -22 ? ? ? A . n A 1 11 GLY 11 -21 ? ? ? A . n A 1 12 SER 12 -20 ? ? ? A . n A 1 13 MET 13 -19 ? ? ? A . n A 1 14 ALA 14 -18 ? ? ? A . n A 1 15 SER 15 -17 ? ? ? A . n A 1 16 HIS 16 -16 ? ? ? A . n A 1 17 ARG 17 -15 ? ? ? A . n A 1 18 LEU 18 -14 ? ? ? A . n A 1 19 LEU 19 -13 ? ? ? A . n A 1 20 LEU 20 -12 ? ? ? A . n A 1 21 LEU 21 -11 ? ? ? A . n A 1 22 CYS 22 -10 ? ? ? A . n A 1 23 LEU 23 -9 ? ? ? A . n A 1 24 ALA 24 -8 ? ? ? A . n A 1 25 GLY 25 -7 ? ? ? A . n A 1 26 LEU 26 -6 ? ? ? A . n A 1 27 VAL 27 -5 ? ? ? A . n A 1 28 PHE 28 -4 ? ? ? A . n A 1 29 VAL 29 -3 ? ? ? A . n A 1 30 SER 30 -2 ? ? ? A . n A 1 31 GLU 31 -1 ? ? ? A . n A 1 32 ALA 32 0 ? ? ? A . n A 1 33 GLY 33 1 ? ? ? A . n A 1 34 PRO 34 2 ? ? ? A . n A 1 35 THR 35 3 ? ? ? A . n A 1 36 GLY 36 4 ? ? ? A . n A 1 37 THR 37 5 ? ? ? A . n A 1 38 GLY 38 6 ? ? ? A . n A 1 39 GLU 39 7 ? ? ? A . n A 1 40 SER 40 8 ? ? ? A . n A 1 41 LYS 41 9 ? ? ? A . n A 1 42 CYS 42 10 10 CYS CYS A . n A 1 43 PRO 43 11 11 PRO PRO A . n A 1 44 LEU 44 12 12 LEU LEU A . n A 1 45 MET 45 13 13 MET MET A . n A 1 46 VAL 46 14 14 VAL VAL A . n A 1 47 LYS 47 15 15 LYS LYS A . n A 1 48 VAL 48 16 16 VAL VAL A . n A 1 49 LEU 49 17 17 LEU LEU A . n A 1 50 ASP 50 18 18 ASP ASP A . n A 1 51 ALA 51 19 19 ALA ALA A . n A 1 52 VAL 52 20 20 VAL VAL A . n A 1 53 ARG 53 21 21 ARG ARG A . n A 1 54 GLY 54 22 22 GLY GLY A . n A 1 55 SER 55 23 23 SER SER A . n A 1 56 PRO 56 24 24 PRO PRO A . n A 1 57 ALA 57 25 25 ALA ALA A . n A 1 58 ILE 58 26 26 ILE ILE A . n A 1 59 ASN 59 27 27 ASN ASN A . n A 1 60 VAL 60 28 28 VAL VAL A . n A 1 61 ALA 61 29 29 ALA ALA A . n A 1 62 MET 62 30 30 MET MET A . n A 1 63 HIS 63 31 31 HIS HIS A . n A 1 64 VAL 64 32 32 VAL VAL A . n A 1 65 PHE 65 33 33 PHE PHE A . n A 1 66 ARG 66 34 34 ARG ARG A . n A 1 67 LYS 67 35 35 LYS LYS A . n A 1 68 ALA 68 36 36 ALA ALA A . n A 1 69 ALA 69 37 37 ALA ALA A . n A 1 70 ASP 70 38 38 ASP ASP A . n A 1 71 ASP 71 39 39 ASP ASP A . n A 1 72 THR 72 40 40 THR THR A . n A 1 73 TRP 73 41 41 TRP TRP A . n A 1 74 GLU 74 42 42 GLU GLU A . n A 1 75 PRO 75 43 43 PRO PRO A . n A 1 76 PHE 76 44 44 PHE PHE A . n A 1 77 ALA 77 45 45 ALA ALA A . n A 1 78 SER 78 46 46 SER SER A . n A 1 79 GLY 79 47 47 GLY GLY A . n A 1 80 LYS 80 48 48 LYS LYS A . n A 1 81 THR 81 49 49 THR THR A . n A 1 82 SER 82 50 50 SER SER A . n A 1 83 GLU 83 51 51 GLU GLU A . n A 1 84 SER 84 52 52 SER SER A . n A 1 85 GLY 85 53 53 GLY GLY A . n A 1 86 GLU 86 54 54 GLU GLU A . n A 1 87 LEU 87 55 55 LEU LEU A . n A 1 88 HIS 88 56 56 HIS HIS A . n A 1 89 GLY 89 57 57 GLY GLY A . n A 1 90 LEU 90 58 58 LEU LEU A . n A 1 91 THR 91 59 59 THR THR A . n A 1 92 THR 92 60 60 THR THR A . n A 1 93 GLU 93 61 61 GLU GLU A . n A 1 94 GLU 94 62 62 GLU GLU A . n A 1 95 GLU 95 63 63 GLU GLU A . n A 1 96 PHE 96 64 64 PHE PHE A . n A 1 97 VAL 97 65 65 VAL VAL A . n A 1 98 GLU 98 66 66 GLU GLU A . n A 1 99 GLY 99 67 67 GLY GLY A . n A 1 100 ILE 100 68 68 ILE ILE A . n A 1 101 TYR 101 69 69 TYR TYR A . n A 1 102 LYS 102 70 70 LYS LYS A . n A 1 103 VAL 103 71 71 VAL VAL A . n A 1 104 GLU 104 72 72 GLU GLU A . n A 1 105 ILE 105 73 73 ILE ILE A . n A 1 106 ASP 106 74 74 ASP ASP A . n A 1 107 THR 107 75 75 THR THR A . n A 1 108 LYS 108 76 76 LYS LYS A . n A 1 109 SER 109 77 77 SER SER A . n A 1 110 TYR 110 78 78 TYR TYR A . n A 1 111 TRP 111 79 79 TRP TRP A . n A 1 112 LYS 112 80 80 LYS LYS A . n A 1 113 ALA 113 81 81 ALA ALA A . n A 1 114 LEU 114 82 82 LEU LEU A . n A 1 115 GLY 115 83 83 GLY GLY A . n A 1 116 ILE 116 84 84 ILE ILE A . n A 1 117 SER 117 85 85 SER SER A . n A 1 118 PRO 118 86 86 PRO PRO A . n A 1 119 PHE 119 87 87 PHE PHE A . n A 1 120 HIS 120 88 88 HIS HIS A . n A 1 121 GLU 121 89 89 GLU GLU A . n A 1 122 HIS 122 90 90 HIS HIS A . n A 1 123 ALA 123 91 91 ALA ALA A . n A 1 124 GLU 124 92 92 GLU GLU A . n A 1 125 VAL 125 93 93 VAL VAL A . n A 1 126 VAL 126 94 94 VAL VAL A . n A 1 127 PHE 127 95 95 PHE PHE A . n A 1 128 THR 128 96 96 THR THR A . n A 1 129 ALA 129 97 97 ALA ALA A . n A 1 130 ASN 130 98 98 ASN ASN A . n A 1 131 ASP 131 99 99 ASP ASP A . n A 1 132 SER 132 100 100 SER SER A . n A 1 133 GLY 133 101 101 GLY GLY A . n A 1 134 PRO 134 102 102 PRO PRO A . n A 1 135 ARG 135 103 103 ARG ARG A . n A 1 136 ARG 136 104 104 ARG ARG A . n A 1 137 TYR 137 105 105 TYR TYR A . n A 1 138 THR 138 106 106 THR THR A . n A 1 139 ILE 139 107 107 ILE ILE A . n A 1 140 ALA 140 108 108 ALA ALA A . n A 1 141 ALA 141 109 109 ALA ALA A . n A 1 142 LEU 142 110 110 LEU LEU A . n A 1 143 LEU 143 111 111 LEU LEU A . n A 1 144 SER 144 112 112 SER SER A . n A 1 145 PRO 145 113 113 PRO PRO A . n A 1 146 TYR 146 114 114 TYR TYR A . n A 1 147 SER 147 115 115 SER SER A . n A 1 148 TYR 148 116 116 TYR TYR A . n A 1 149 SER 149 117 117 SER SER A . n A 1 150 THR 150 118 118 THR THR A . n A 1 151 THR 151 119 119 THR THR A . n A 1 152 ALA 152 120 120 ALA ALA A . n A 1 153 VAL 153 121 121 VAL VAL A . n A 1 154 VAL 154 122 122 VAL VAL A . n A 1 155 THR 155 123 123 THR THR A . n A 1 156 ASN 156 124 124 ASN ASN A . n A 1 157 PRO 157 125 ? ? ? A . n A 1 158 LYS 158 126 ? ? ? A . n A 1 159 GLU 159 127 ? ? ? A . n B 1 1 MET 1 -31 ? ? ? B . n B 1 2 ARG 2 -30 ? ? ? B . n B 1 3 GLY 3 -29 ? ? ? B . n B 1 4 SER 4 -28 ? ? ? B . n B 1 5 HIS 5 -27 ? ? ? B . n B 1 6 HIS 6 -26 ? ? ? B . n B 1 7 HIS 7 -25 ? ? ? B . n B 1 8 HIS 8 -24 ? ? ? B . n B 1 9 HIS 9 -23 ? ? ? B . n B 1 10 HIS 10 -22 ? ? ? B . n B 1 11 GLY 11 -21 ? ? ? B . n B 1 12 SER 12 -20 ? ? ? B . n B 1 13 MET 13 -19 ? ? ? B . n B 1 14 ALA 14 -18 ? ? ? B . n B 1 15 SER 15 -17 ? ? ? B . n B 1 16 HIS 16 -16 ? ? ? B . n B 1 17 ARG 17 -15 ? ? ? B . n B 1 18 LEU 18 -14 ? ? ? B . n B 1 19 LEU 19 -13 ? ? ? B . n B 1 20 LEU 20 -12 ? ? ? B . n B 1 21 LEU 21 -11 ? ? ? B . n B 1 22 CYS 22 -10 ? ? ? B . n B 1 23 LEU 23 -9 ? ? ? B . n B 1 24 ALA 24 -8 ? ? ? B . n B 1 25 GLY 25 -7 ? ? ? B . n B 1 26 LEU 26 -6 ? ? ? B . n B 1 27 VAL 27 -5 ? ? ? B . n B 1 28 PHE 28 -4 ? ? ? B . n B 1 29 VAL 29 -3 ? ? ? B . n B 1 30 SER 30 -2 ? ? ? B . n B 1 31 GLU 31 -1 ? ? ? B . n B 1 32 ALA 32 0 ? ? ? B . n B 1 33 GLY 33 1 ? ? ? B . n B 1 34 PRO 34 2 ? ? ? B . n B 1 35 THR 35 3 ? ? ? B . n B 1 36 GLY 36 4 ? ? ? B . n B 1 37 THR 37 5 ? ? ? B . n B 1 38 GLY 38 6 ? ? ? B . n B 1 39 GLU 39 7 ? ? ? B . n B 1 40 SER 40 8 ? ? ? B . n B 1 41 LYS 41 9 ? ? ? B . n B 1 42 CYS 42 10 10 CYS CYS B . n B 1 43 PRO 43 11 11 PRO PRO B . n B 1 44 LEU 44 12 12 LEU LEU B . n B 1 45 MET 45 13 13 MET MET B . n B 1 46 VAL 46 14 14 VAL VAL B . n B 1 47 LYS 47 15 15 LYS LYS B . n B 1 48 VAL 48 16 16 VAL VAL B . n B 1 49 LEU 49 17 17 LEU LEU B . n B 1 50 ASP 50 18 18 ASP ASP B . n B 1 51 ALA 51 19 19 ALA ALA B . n B 1 52 VAL 52 20 20 VAL VAL B . n B 1 53 ARG 53 21 21 ARG ARG B . n B 1 54 GLY 54 22 22 GLY GLY B . n B 1 55 SER 55 23 23 SER SER B . n B 1 56 PRO 56 24 24 PRO PRO B . n B 1 57 ALA 57 25 25 ALA ALA B . n B 1 58 ILE 58 26 26 ILE ILE B . n B 1 59 ASN 59 27 27 ASN ASN B . n B 1 60 VAL 60 28 28 VAL VAL B . n B 1 61 ALA 61 29 29 ALA ALA B . n B 1 62 MET 62 30 30 MET MET B . n B 1 63 HIS 63 31 31 HIS HIS B . n B 1 64 VAL 64 32 32 VAL VAL B . n B 1 65 PHE 65 33 33 PHE PHE B . n B 1 66 ARG 66 34 34 ARG ARG B . n B 1 67 LYS 67 35 35 LYS LYS B . n B 1 68 ALA 68 36 36 ALA ALA B . n B 1 69 ALA 69 37 37 ALA ALA B . n B 1 70 ASP 70 38 38 ASP ASP B . n B 1 71 ASP 71 39 39 ASP ASP B . n B 1 72 THR 72 40 40 THR THR B . n B 1 73 TRP 73 41 41 TRP TRP B . n B 1 74 GLU 74 42 42 GLU GLU B . n B 1 75 PRO 75 43 43 PRO PRO B . n B 1 76 PHE 76 44 44 PHE PHE B . n B 1 77 ALA 77 45 45 ALA ALA B . n B 1 78 SER 78 46 46 SER SER B . n B 1 79 GLY 79 47 47 GLY GLY B . n B 1 80 LYS 80 48 48 LYS LYS B . n B 1 81 THR 81 49 49 THR THR B . n B 1 82 SER 82 50 50 SER SER B . n B 1 83 GLU 83 51 51 GLU GLU B . n B 1 84 SER 84 52 52 SER SER B . n B 1 85 GLY 85 53 53 GLY GLY B . n B 1 86 GLU 86 54 54 GLU GLU B . n B 1 87 LEU 87 55 55 LEU LEU B . n B 1 88 HIS 88 56 56 HIS HIS B . n B 1 89 GLY 89 57 57 GLY GLY B . n B 1 90 LEU 90 58 58 LEU LEU B . n B 1 91 THR 91 59 59 THR THR B . n B 1 92 THR 92 60 60 THR THR B . n B 1 93 GLU 93 61 61 GLU GLU B . n B 1 94 GLU 94 62 62 GLU GLU B . n B 1 95 GLU 95 63 63 GLU GLU B . n B 1 96 PHE 96 64 64 PHE PHE B . n B 1 97 VAL 97 65 65 VAL VAL B . n B 1 98 GLU 98 66 66 GLU GLU B . n B 1 99 GLY 99 67 67 GLY GLY B . n B 1 100 ILE 100 68 68 ILE ILE B . n B 1 101 TYR 101 69 69 TYR TYR B . n B 1 102 LYS 102 70 70 LYS LYS B . n B 1 103 VAL 103 71 71 VAL VAL B . n B 1 104 GLU 104 72 72 GLU GLU B . n B 1 105 ILE 105 73 73 ILE ILE B . n B 1 106 ASP 106 74 74 ASP ASP B . n B 1 107 THR 107 75 75 THR THR B . n B 1 108 LYS 108 76 76 LYS LYS B . n B 1 109 SER 109 77 77 SER SER B . n B 1 110 TYR 110 78 78 TYR TYR B . n B 1 111 TRP 111 79 79 TRP TRP B . n B 1 112 LYS 112 80 80 LYS LYS B . n B 1 113 ALA 113 81 81 ALA ALA B . n B 1 114 LEU 114 82 82 LEU LEU B . n B 1 115 GLY 115 83 83 GLY GLY B . n B 1 116 ILE 116 84 84 ILE ILE B . n B 1 117 SER 117 85 85 SER SER B . n B 1 118 PRO 118 86 86 PRO PRO B . n B 1 119 PHE 119 87 87 PHE PHE B . n B 1 120 HIS 120 88 88 HIS HIS B . n B 1 121 GLU 121 89 89 GLU GLU B . n B 1 122 HIS 122 90 90 HIS HIS B . n B 1 123 ALA 123 91 91 ALA ALA B . n B 1 124 GLU 124 92 92 GLU GLU B . n B 1 125 VAL 125 93 93 VAL VAL B . n B 1 126 VAL 126 94 94 VAL VAL B . n B 1 127 PHE 127 95 95 PHE PHE B . n B 1 128 THR 128 96 96 THR THR B . n B 1 129 ALA 129 97 97 ALA ALA B . n B 1 130 ASN 130 98 98 ASN ASN B . n B 1 131 ASP 131 99 99 ASP ASP B . n B 1 132 SER 132 100 100 SER SER B . n B 1 133 GLY 133 101 ? ? ? B . n B 1 134 PRO 134 102 ? ? ? B . n B 1 135 ARG 135 103 ? ? ? B . n B 1 136 ARG 136 104 104 ARG ARG B . n B 1 137 TYR 137 105 105 TYR TYR B . n B 1 138 THR 138 106 106 THR THR B . n B 1 139 ILE 139 107 107 ILE ILE B . n B 1 140 ALA 140 108 108 ALA ALA B . n B 1 141 ALA 141 109 109 ALA ALA B . n B 1 142 LEU 142 110 110 LEU LEU B . n B 1 143 LEU 143 111 111 LEU LEU B . n B 1 144 SER 144 112 112 SER SER B . n B 1 145 PRO 145 113 113 PRO PRO B . n B 1 146 TYR 146 114 114 TYR TYR B . n B 1 147 SER 147 115 115 SER SER B . n B 1 148 TYR 148 116 116 TYR TYR B . n B 1 149 SER 149 117 117 SER SER B . n B 1 150 THR 150 118 118 THR THR B . n B 1 151 THR 151 119 119 THR THR B . n B 1 152 ALA 152 120 120 ALA ALA B . n B 1 153 VAL 153 121 121 VAL VAL B . n B 1 154 VAL 154 122 122 VAL VAL B . n B 1 155 THR 155 123 123 THR THR B . n B 1 156 ASN 156 124 124 ASN ASN B . n B 1 157 PRO 157 125 ? ? ? B . n B 1 158 LYS 158 126 ? ? ? B . n B 1 159 GLU 159 127 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MKS 1 201 200 MKS DRG A . D 3 BR 1 202 201 BR BR A . E 3 BR 1 203 203 BR BR A . F 3 BR 1 204 204 BR BR A . G 3 BR 1 205 205 BR BR A . H 3 BR 1 201 202 BR BR B . I 2 MKS 1 202 200 MKS DRG B . J 3 BR 1 203 201 BR BR B . K 4 HOH 1 301 179 HOH HOH A . K 4 HOH 2 302 112 HOH HOH A . K 4 HOH 3 303 98 HOH HOH A . K 4 HOH 4 304 157 HOH HOH A . K 4 HOH 5 305 115 HOH HOH A . K 4 HOH 6 306 45 HOH HOH A . K 4 HOH 7 307 168 HOH HOH A . K 4 HOH 8 308 110 HOH HOH A . K 4 HOH 9 309 44 HOH HOH A . K 4 HOH 10 310 184 HOH HOH A . K 4 HOH 11 311 66 HOH HOH A . K 4 HOH 12 312 108 HOH HOH A . K 4 HOH 13 313 92 HOH HOH A . K 4 HOH 14 314 76 HOH HOH A . K 4 HOH 15 315 154 HOH HOH A . K 4 HOH 16 316 119 HOH HOH A . K 4 HOH 17 317 81 HOH HOH A . K 4 HOH 18 318 14 HOH HOH A . K 4 HOH 19 319 188 HOH HOH A . K 4 HOH 20 320 59 HOH HOH A . K 4 HOH 21 321 150 HOH HOH A . K 4 HOH 22 322 33 HOH HOH A . K 4 HOH 23 323 187 HOH HOH A . K 4 HOH 24 324 194 HOH HOH A . K 4 HOH 25 325 25 HOH HOH A . K 4 HOH 26 326 117 HOH HOH A . K 4 HOH 27 327 20 HOH HOH A . K 4 HOH 28 328 166 HOH HOH A . K 4 HOH 29 329 169 HOH HOH A . K 4 HOH 30 330 86 HOH HOH A . K 4 HOH 31 331 11 HOH HOH A . K 4 HOH 32 332 153 HOH HOH A . K 4 HOH 33 333 164 HOH HOH A . K 4 HOH 34 334 96 HOH HOH A . K 4 HOH 35 335 22 HOH HOH A . K 4 HOH 36 336 93 HOH HOH A . K 4 HOH 37 337 133 HOH HOH A . K 4 HOH 38 338 114 HOH HOH A . K 4 HOH 39 339 19 HOH HOH A . K 4 HOH 40 340 67 HOH HOH A . K 4 HOH 41 341 146 HOH HOH A . K 4 HOH 42 342 181 HOH HOH A . K 4 HOH 43 343 126 HOH HOH A . K 4 HOH 44 344 185 HOH HOH A . K 4 HOH 45 345 180 HOH HOH A . K 4 HOH 46 346 186 HOH HOH A . K 4 HOH 47 347 193 HOH HOH A . K 4 HOH 48 348 192 HOH HOH A . K 4 HOH 49 349 3 HOH HOH A . K 4 HOH 50 350 7 HOH HOH A . K 4 HOH 51 351 8 HOH HOH A . K 4 HOH 52 352 10 HOH HOH A . K 4 HOH 53 353 15 HOH HOH A . K 4 HOH 54 354 16 HOH HOH A . K 4 HOH 55 355 21 HOH HOH A . K 4 HOH 56 356 23 HOH HOH A . K 4 HOH 57 357 28 HOH HOH A . K 4 HOH 58 358 30 HOH HOH A . K 4 HOH 59 359 31 HOH HOH A . K 4 HOH 60 360 32 HOH HOH A . K 4 HOH 61 361 34 HOH HOH A . K 4 HOH 62 362 35 HOH HOH A . K 4 HOH 63 363 37 HOH HOH A . K 4 HOH 64 364 41 HOH HOH A . K 4 HOH 65 365 46 HOH HOH A . K 4 HOH 66 366 47 HOH HOH A . K 4 HOH 67 367 49 HOH HOH A . K 4 HOH 68 368 51 HOH HOH A . K 4 HOH 69 369 70 HOH HOH A . K 4 HOH 70 370 71 HOH HOH A . K 4 HOH 71 371 73 HOH HOH A . K 4 HOH 72 372 78 HOH HOH A . K 4 HOH 73 373 79 HOH HOH A . K 4 HOH 74 374 80 HOH HOH A . K 4 HOH 75 375 83 HOH HOH A . K 4 HOH 76 376 85 HOH HOH A . K 4 HOH 77 377 99 HOH HOH A . K 4 HOH 78 378 104 HOH HOH A . K 4 HOH 79 379 111 HOH HOH A . K 4 HOH 80 380 116 HOH HOH A . K 4 HOH 81 381 124 HOH HOH A . K 4 HOH 82 382 127 HOH HOH A . K 4 HOH 83 383 128 HOH HOH A . K 4 HOH 84 384 130 HOH HOH A . K 4 HOH 85 385 131 HOH HOH A . K 4 HOH 86 386 134 HOH HOH A . K 4 HOH 87 387 147 HOH HOH A . K 4 HOH 88 388 156 HOH HOH A . K 4 HOH 89 389 158 HOH HOH A . K 4 HOH 90 390 162 HOH HOH A . K 4 HOH 91 391 167 HOH HOH A . K 4 HOH 92 392 172 HOH HOH A . K 4 HOH 93 393 173 HOH HOH A . K 4 HOH 94 394 176 HOH HOH A . L 4 HOH 1 301 139 HOH HOH B . L 4 HOH 2 302 84 HOH HOH B . L 4 HOH 3 303 64 HOH HOH B . L 4 HOH 4 304 100 HOH HOH B . L 4 HOH 5 305 82 HOH HOH B . L 4 HOH 6 306 60 HOH HOH B . L 4 HOH 7 307 122 HOH HOH B . L 4 HOH 8 308 144 HOH HOH B . L 4 HOH 9 309 141 HOH HOH B . L 4 HOH 10 310 57 HOH HOH B . L 4 HOH 11 311 195 HOH HOH B . L 4 HOH 12 312 189 HOH HOH B . L 4 HOH 13 313 140 HOH HOH B . L 4 HOH 14 314 63 HOH HOH B . L 4 HOH 15 315 38 HOH HOH B . L 4 HOH 16 316 50 HOH HOH B . L 4 HOH 17 317 125 HOH HOH B . L 4 HOH 18 318 75 HOH HOH B . L 4 HOH 19 319 87 HOH HOH B . L 4 HOH 20 320 58 HOH HOH B . L 4 HOH 21 321 26 HOH HOH B . L 4 HOH 22 322 152 HOH HOH B . L 4 HOH 23 323 91 HOH HOH B . L 4 HOH 24 324 56 HOH HOH B . L 4 HOH 25 325 42 HOH HOH B . L 4 HOH 26 326 171 HOH HOH B . L 4 HOH 27 327 190 HOH HOH B . L 4 HOH 28 328 123 HOH HOH B . L 4 HOH 29 329 149 HOH HOH B . L 4 HOH 30 330 142 HOH HOH B . L 4 HOH 31 331 97 HOH HOH B . L 4 HOH 32 332 143 HOH HOH B . L 4 HOH 33 333 174 HOH HOH B . L 4 HOH 34 334 191 HOH HOH B . L 4 HOH 35 335 182 HOH HOH B . L 4 HOH 36 336 4 HOH HOH B . L 4 HOH 37 337 5 HOH HOH B . L 4 HOH 38 338 6 HOH HOH B . L 4 HOH 39 339 12 HOH HOH B . L 4 HOH 40 340 13 HOH HOH B . L 4 HOH 41 341 17 HOH HOH B . L 4 HOH 42 342 18 HOH HOH B . L 4 HOH 43 343 24 HOH HOH B . L 4 HOH 44 344 29 HOH HOH B . L 4 HOH 45 345 36 HOH HOH B . L 4 HOH 46 346 39 HOH HOH B . L 4 HOH 47 347 43 HOH HOH B . L 4 HOH 48 348 48 HOH HOH B . L 4 HOH 49 349 52 HOH HOH B . L 4 HOH 50 350 53 HOH HOH B . L 4 HOH 51 351 61 HOH HOH B . L 4 HOH 52 352 62 HOH HOH B . L 4 HOH 53 353 68 HOH HOH B . L 4 HOH 54 354 69 HOH HOH B . L 4 HOH 55 355 72 HOH HOH B . L 4 HOH 56 356 74 HOH HOH B . L 4 HOH 57 357 89 HOH HOH B . L 4 HOH 58 358 90 HOH HOH B . L 4 HOH 59 359 94 HOH HOH B . L 4 HOH 60 360 101 HOH HOH B . L 4 HOH 61 361 102 HOH HOH B . L 4 HOH 62 362 103 HOH HOH B . L 4 HOH 63 363 106 HOH HOH B . L 4 HOH 64 364 107 HOH HOH B . L 4 HOH 65 365 109 HOH HOH B . L 4 HOH 66 366 113 HOH HOH B . L 4 HOH 67 367 120 HOH HOH B . L 4 HOH 68 368 129 HOH HOH B . L 4 HOH 69 369 132 HOH HOH B . L 4 HOH 70 370 137 HOH HOH B . L 4 HOH 71 371 155 HOH HOH B . L 4 HOH 72 372 159 HOH HOH B . L 4 HOH 73 373 161 HOH HOH B . L 4 HOH 74 374 163 HOH HOH B . L 4 HOH 75 375 165 HOH HOH B . L 4 HOH 76 376 170 HOH HOH B . L 4 HOH 77 377 175 HOH HOH B . L 4 HOH 78 378 177 HOH HOH B . L 4 HOH 79 379 178 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I,J,K,L 1 2 A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1.0000000000 0.0000000000 0.0000000000 -43.0890000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A MKS 201 ? C MKS . 2 1 B MKS 202 ? I MKS . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-09-09 2 'Structure model' 1 1 2020-02-05 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' diffrn_source 2 2 'Structure model' pdbx_prerelease_seq 3 2 'Structure model' pdbx_struct_oper_list 4 2 'Structure model' pdbx_struct_special_symmetry # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.7.0029 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 SER _pdbx_validate_rmsd_angle.auth_seq_id_1 112 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 113 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 113 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.26 _pdbx_validate_rmsd_angle.angle_target_value 119.30 _pdbx_validate_rmsd_angle.angle_deviation -9.04 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -31 ? A MET 1 2 1 Y 1 A ARG -30 ? A ARG 2 3 1 Y 1 A GLY -29 ? A GLY 3 4 1 Y 1 A SER -28 ? A SER 4 5 1 Y 1 A HIS -27 ? A HIS 5 6 1 Y 1 A HIS -26 ? A HIS 6 7 1 Y 1 A HIS -25 ? A HIS 7 8 1 Y 1 A HIS -24 ? A HIS 8 9 1 Y 1 A HIS -23 ? A HIS 9 10 1 Y 1 A HIS -22 ? A HIS 10 11 1 Y 1 A GLY -21 ? A GLY 11 12 1 Y 1 A SER -20 ? A SER 12 13 1 Y 1 A MET -19 ? A MET 13 14 1 Y 1 A ALA -18 ? A ALA 14 15 1 Y 1 A SER -17 ? A SER 15 16 1 Y 1 A HIS -16 ? A HIS 16 17 1 Y 1 A ARG -15 ? A ARG 17 18 1 Y 1 A LEU -14 ? A LEU 18 19 1 Y 1 A LEU -13 ? A LEU 19 20 1 Y 1 A LEU -12 ? A LEU 20 21 1 Y 1 A LEU -11 ? A LEU 21 22 1 Y 1 A CYS -10 ? A CYS 22 23 1 Y 1 A LEU -9 ? A LEU 23 24 1 Y 1 A ALA -8 ? A ALA 24 25 1 Y 1 A GLY -7 ? A GLY 25 26 1 Y 1 A LEU -6 ? A LEU 26 27 1 Y 1 A VAL -5 ? A VAL 27 28 1 Y 1 A PHE -4 ? A PHE 28 29 1 Y 1 A VAL -3 ? A VAL 29 30 1 Y 1 A SER -2 ? A SER 30 31 1 Y 1 A GLU -1 ? A GLU 31 32 1 Y 1 A ALA 0 ? A ALA 32 33 1 Y 1 A GLY 1 ? A GLY 33 34 1 Y 1 A PRO 2 ? A PRO 34 35 1 Y 1 A THR 3 ? A THR 35 36 1 Y 1 A GLY 4 ? A GLY 36 37 1 Y 1 A THR 5 ? A THR 37 38 1 Y 1 A GLY 6 ? A GLY 38 39 1 Y 1 A GLU 7 ? A GLU 39 40 1 Y 1 A SER 8 ? A SER 40 41 1 Y 1 A LYS 9 ? A LYS 41 42 1 Y 1 A PRO 125 ? A PRO 157 43 1 Y 1 A LYS 126 ? A LYS 158 44 1 Y 1 A GLU 127 ? A GLU 159 45 1 Y 1 B MET -31 ? B MET 1 46 1 Y 1 B ARG -30 ? B ARG 2 47 1 Y 1 B GLY -29 ? B GLY 3 48 1 Y 1 B SER -28 ? B SER 4 49 1 Y 1 B HIS -27 ? B HIS 5 50 1 Y 1 B HIS -26 ? B HIS 6 51 1 Y 1 B HIS -25 ? B HIS 7 52 1 Y 1 B HIS -24 ? B HIS 8 53 1 Y 1 B HIS -23 ? B HIS 9 54 1 Y 1 B HIS -22 ? B HIS 10 55 1 Y 1 B GLY -21 ? B GLY 11 56 1 Y 1 B SER -20 ? B SER 12 57 1 Y 1 B MET -19 ? B MET 13 58 1 Y 1 B ALA -18 ? B ALA 14 59 1 Y 1 B SER -17 ? B SER 15 60 1 Y 1 B HIS -16 ? B HIS 16 61 1 Y 1 B ARG -15 ? B ARG 17 62 1 Y 1 B LEU -14 ? B LEU 18 63 1 Y 1 B LEU -13 ? B LEU 19 64 1 Y 1 B LEU -12 ? B LEU 20 65 1 Y 1 B LEU -11 ? B LEU 21 66 1 Y 1 B CYS -10 ? B CYS 22 67 1 Y 1 B LEU -9 ? B LEU 23 68 1 Y 1 B ALA -8 ? B ALA 24 69 1 Y 1 B GLY -7 ? B GLY 25 70 1 Y 1 B LEU -6 ? B LEU 26 71 1 Y 1 B VAL -5 ? B VAL 27 72 1 Y 1 B PHE -4 ? B PHE 28 73 1 Y 1 B VAL -3 ? B VAL 29 74 1 Y 1 B SER -2 ? B SER 30 75 1 Y 1 B GLU -1 ? B GLU 31 76 1 Y 1 B ALA 0 ? B ALA 32 77 1 Y 1 B GLY 1 ? B GLY 33 78 1 Y 1 B PRO 2 ? B PRO 34 79 1 Y 1 B THR 3 ? B THR 35 80 1 Y 1 B GLY 4 ? B GLY 36 81 1 Y 1 B THR 5 ? B THR 37 82 1 Y 1 B GLY 6 ? B GLY 38 83 1 Y 1 B GLU 7 ? B GLU 39 84 1 Y 1 B SER 8 ? B SER 40 85 1 Y 1 B LYS 9 ? B LYS 41 86 1 Y 1 B GLY 101 ? B GLY 133 87 1 Y 1 B PRO 102 ? B PRO 134 88 1 Y 1 B ARG 103 ? B ARG 135 89 1 Y 1 B PRO 125 ? B PRO 157 90 1 Y 1 B LYS 126 ? B LYS 158 91 1 Y 1 B GLU 127 ? B GLU 159 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Takeda Science Foundation' Japan ? 1 'Amyloidosis Research Committee from the Ministry of Health, Labour, and Welware' Japan ? 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '1,3,6-trihydroxy-7-methoxy-2,8-bis(3-methylbut-2-en-1-yl)-9H-xanthen-9-one' MKS 3 'BROMIDE ION' BR 4 water HOH #