HEADER HYDROLASE 17-FEB-15 4Y9S TITLE STRUCTURE OF AN H300N MUTANT OF POTATO EPOXIDE HYDROLASE, STEH1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPOXIDE HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOLANUM TUBEROSUM; SOURCE 3 ORGANISM_COMMON: POTATO; SOURCE 4 ORGANISM_TAXID: 4113; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XL1-BLUE; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGTACSTEH1-5H KEYWDS MUTATION OF CATALYTIC RESIDUE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.NAWORYTA,S.L.MOWBRAY,M.WIDERSTEN REVDAT 3 10-JAN-24 4Y9S 1 REMARK REVDAT 2 19-JUL-17 4Y9S 1 REVDAT 1 16-SEP-15 4Y9S 0 JRNL AUTH B.A.AMREIN,P.BAUER,F.DUARTE,A.JANFALK CARLSSON,A.NAWORYTA, JRNL AUTH 2 S.L.MOWBRAY,M.WIDERSTEN,S.C.KAMERLIN JRNL TITL EXPANDING THE CATALYTIC TRIAD IN EPOXIDE HYDROLASES AND JRNL TITL 2 RELATED ENZYMES. JRNL REF ACS CATAL V. 5 5702 2015 JRNL REFN ESSN 2155-5435 JRNL PMID 26527505 JRNL DOI 10.1021/ACSCATAL.5B01639 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 42817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2276 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3099 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1770 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5111 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 482 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.26000 REMARK 3 B22 (A**2) : -0.53000 REMARK 3 B33 (A**2) : 0.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.156 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.353 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5271 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5011 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7171 ; 1.817 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11547 ; 0.912 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 637 ; 6.276 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;35.881 ;23.917 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 844 ;14.811 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;20.954 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 763 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5917 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1235 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2554 ; 1.776 ; 1.732 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2553 ; 1.772 ; 1.731 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3189 ; 2.612 ; 2.587 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3190 ; 2.612 ; 2.587 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2717 ; 2.817 ; 2.038 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2718 ; 2.817 ; 2.039 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3983 ; 4.400 ; 2.916 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6408 ; 6.295 ;15.161 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6243 ; 6.158 ;14.771 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Y9S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206944. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93300 REMARK 200 MONOCHROMATOR : DIAMOND (111) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45161 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 51.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.8.0073 REMARK 200 STARTING MODEL: 2CJP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 UL DROPS OF PROTEIN SOLUTION (7.2 REMARK 280 MG/ML, I.E. 0.2 MM, IN 30 MM TRIS-HCL, PH 7.4, 5 MM VALPROMIDE) REMARK 280 WERE MIXED WITH 1 UL DROPS OF RESERVOIR SOLUTION (CONTAINING 90 REMARK 280 MM NA-HEPES, PH 7.5, 25% PEG 10, 000). ONCE CRYSTALS WERE REMARK 280 OBTAINED THEY WERE SOAKED IN MOTHER LIQUOR AT PH 3.5 PRIOR TO REMARK 280 FREEZING., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.01050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.77550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.01800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.77550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.01050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.01800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A -6 REMARK 465 SER A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR B -6 REMARK 465 SER B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 224 O HOH B 514 2.03 REMARK 500 O HOH A 560 O HOH A 567 2.09 REMARK 500 O HOH B 509 O HOH B 529 2.10 REMARK 500 O HOH B 564 O HOH B 574 2.12 REMARK 500 NZ LYS B 121 O HOH B 529 2.12 REMARK 500 O HOH B 433 O HOH B 438 2.16 REMARK 500 NH2 ARG A 306 OE2 GLU A 309 2.18 REMARK 500 O HOH A 524 O HOH A 566 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 409 O HOH B 426 2674 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 151 CD GLU A 151 OE1 0.074 REMARK 500 GLY A 227 CA GLY A 227 C 0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 53 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 53 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 60 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 120 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 157 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 105 -122.30 62.77 REMARK 500 SER A 129 -49.97 78.74 REMARK 500 ALA A 299 -119.01 -113.56 REMARK 500 ASP B 105 -125.29 62.52 REMARK 500 SER B 129 -51.19 80.39 REMARK 500 ALA B 299 -125.17 -113.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CXU RELATED DB: PDB REMARK 900 3CXU IS A Y149F MUTANT REMARK 900 RELATED ID: 2CJP RELATED DB: PDB REMARK 900 2CJP IS WILD-TYPE PROTEIN DBREF 4Y9S A 3 321 UNP Q41415 Q41415_SOLTU 3 321 DBREF 4Y9S B 3 321 UNP Q41415 Q41415_SOLTU 3 321 SEQADV 4Y9S THR A -6 UNP Q41415 EXPRESSION TAG SEQADV 4Y9S SER A -5 UNP Q41415 EXPRESSION TAG SEQADV 4Y9S HIS A -4 UNP Q41415 EXPRESSION TAG SEQADV 4Y9S HIS A -3 UNP Q41415 EXPRESSION TAG SEQADV 4Y9S HIS A -2 UNP Q41415 EXPRESSION TAG SEQADV 4Y9S HIS A -1 UNP Q41415 EXPRESSION TAG SEQADV 4Y9S HIS A 0 UNP Q41415 EXPRESSION TAG SEQADV 4Y9S MET A 1 UNP Q41415 EXPRESSION TAG SEQADV 4Y9S LYS A 2 UNP Q41415 EXPRESSION TAG SEQADV 4Y9S ASN A 300 UNP Q41415 HIS 300 ENGINEERED MUTATION SEQADV 4Y9S THR B -6 UNP Q41415 EXPRESSION TAG SEQADV 4Y9S SER B -5 UNP Q41415 EXPRESSION TAG SEQADV 4Y9S HIS B -4 UNP Q41415 EXPRESSION TAG SEQADV 4Y9S HIS B -3 UNP Q41415 EXPRESSION TAG SEQADV 4Y9S HIS B -2 UNP Q41415 EXPRESSION TAG SEQADV 4Y9S HIS B -1 UNP Q41415 EXPRESSION TAG SEQADV 4Y9S HIS B 0 UNP Q41415 EXPRESSION TAG SEQADV 4Y9S MET B 1 UNP Q41415 EXPRESSION TAG SEQADV 4Y9S LYS B 2 UNP Q41415 EXPRESSION TAG SEQADV 4Y9S ASN B 300 UNP Q41415 HIS 300 ENGINEERED MUTATION SEQRES 1 A 328 THR SER HIS HIS HIS HIS HIS MET LYS LYS ILE GLU HIS SEQRES 2 A 328 LYS MET VAL ALA VAL ASN GLY LEU ASN MET HIS LEU ALA SEQRES 3 A 328 GLU LEU GLY GLU GLY PRO THR ILE LEU PHE ILE HIS GLY SEQRES 4 A 328 PHE PRO GLU LEU TRP TYR SER TRP ARG HIS GLN MET VAL SEQRES 5 A 328 TYR LEU ALA GLU ARG GLY TYR ARG ALA VAL ALA PRO ASP SEQRES 6 A 328 LEU ARG GLY TYR GLY ASP THR THR GLY ALA PRO LEU ASN SEQRES 7 A 328 ASP PRO SER LYS PHE SER ILE LEU HIS LEU VAL GLY ASP SEQRES 8 A 328 VAL VAL ALA LEU LEU GLU ALA ILE ALA PRO ASN GLU GLU SEQRES 9 A 328 LYS VAL PHE VAL VAL ALA HIS ASP TRP GLY ALA LEU ILE SEQRES 10 A 328 ALA TRP HIS LEU CYS LEU PHE ARG PRO ASP LYS VAL LYS SEQRES 11 A 328 ALA LEU VAL ASN LEU SER VAL HIS PHE SER LYS ARG ASN SEQRES 12 A 328 PRO LYS MET ASN VAL VAL GLU GLY LEU LYS ALA ILE TYR SEQRES 13 A 328 GLY GLU ASP HIS TYR ILE SER ARG PHE GLN VAL PRO GLY SEQRES 14 A 328 GLU ILE GLU ALA GLU PHE ALA PRO ILE GLY ALA LYS SER SEQRES 15 A 328 VAL LEU LYS LYS ILE LEU THR TYR ARG ASP PRO ALA PRO SEQRES 16 A 328 PHE TYR PHE PRO LYS GLY LYS GLY LEU GLU ALA ILE PRO SEQRES 17 A 328 ASP ALA PRO VAL ALA LEU SER SER TRP LEU SER GLU GLU SEQRES 18 A 328 GLU LEU ASP TYR TYR ALA ASN LYS PHE GLU GLN THR GLY SEQRES 19 A 328 PHE THR GLY ALA VAL ASN TYR TYR ARG ALA LEU PRO ILE SEQRES 20 A 328 ASN TRP GLU LEU THR ALA PRO TRP THR GLY ALA GLN VAL SEQRES 21 A 328 LYS VAL PRO THR LYS PHE ILE VAL GLY GLU PHE ASP LEU SEQRES 22 A 328 VAL TYR HIS ILE PRO GLY ALA LYS GLU TYR ILE HIS ASN SEQRES 23 A 328 GLY GLY PHE LYS LYS ASP VAL PRO LEU LEU GLU GLU VAL SEQRES 24 A 328 VAL VAL LEU GLU GLY ALA ALA ASN PHE VAL SER GLN GLU SEQRES 25 A 328 ARG PRO HIS GLU ILE SER LYS HIS ILE TYR ASP PHE ILE SEQRES 26 A 328 GLN LYS PHE SEQRES 1 B 328 THR SER HIS HIS HIS HIS HIS MET LYS LYS ILE GLU HIS SEQRES 2 B 328 LYS MET VAL ALA VAL ASN GLY LEU ASN MET HIS LEU ALA SEQRES 3 B 328 GLU LEU GLY GLU GLY PRO THR ILE LEU PHE ILE HIS GLY SEQRES 4 B 328 PHE PRO GLU LEU TRP TYR SER TRP ARG HIS GLN MET VAL SEQRES 5 B 328 TYR LEU ALA GLU ARG GLY TYR ARG ALA VAL ALA PRO ASP SEQRES 6 B 328 LEU ARG GLY TYR GLY ASP THR THR GLY ALA PRO LEU ASN SEQRES 7 B 328 ASP PRO SER LYS PHE SER ILE LEU HIS LEU VAL GLY ASP SEQRES 8 B 328 VAL VAL ALA LEU LEU GLU ALA ILE ALA PRO ASN GLU GLU SEQRES 9 B 328 LYS VAL PHE VAL VAL ALA HIS ASP TRP GLY ALA LEU ILE SEQRES 10 B 328 ALA TRP HIS LEU CYS LEU PHE ARG PRO ASP LYS VAL LYS SEQRES 11 B 328 ALA LEU VAL ASN LEU SER VAL HIS PHE SER LYS ARG ASN SEQRES 12 B 328 PRO LYS MET ASN VAL VAL GLU GLY LEU LYS ALA ILE TYR SEQRES 13 B 328 GLY GLU ASP HIS TYR ILE SER ARG PHE GLN VAL PRO GLY SEQRES 14 B 328 GLU ILE GLU ALA GLU PHE ALA PRO ILE GLY ALA LYS SER SEQRES 15 B 328 VAL LEU LYS LYS ILE LEU THR TYR ARG ASP PRO ALA PRO SEQRES 16 B 328 PHE TYR PHE PRO LYS GLY LYS GLY LEU GLU ALA ILE PRO SEQRES 17 B 328 ASP ALA PRO VAL ALA LEU SER SER TRP LEU SER GLU GLU SEQRES 18 B 328 GLU LEU ASP TYR TYR ALA ASN LYS PHE GLU GLN THR GLY SEQRES 19 B 328 PHE THR GLY ALA VAL ASN TYR TYR ARG ALA LEU PRO ILE SEQRES 20 B 328 ASN TRP GLU LEU THR ALA PRO TRP THR GLY ALA GLN VAL SEQRES 21 B 328 LYS VAL PRO THR LYS PHE ILE VAL GLY GLU PHE ASP LEU SEQRES 22 B 328 VAL TYR HIS ILE PRO GLY ALA LYS GLU TYR ILE HIS ASN SEQRES 23 B 328 GLY GLY PHE LYS LYS ASP VAL PRO LEU LEU GLU GLU VAL SEQRES 24 B 328 VAL VAL LEU GLU GLY ALA ALA ASN PHE VAL SER GLN GLU SEQRES 25 B 328 ARG PRO HIS GLU ILE SER LYS HIS ILE TYR ASP PHE ILE SEQRES 26 B 328 GLN LYS PHE FORMUL 3 HOH *482(H2 O) HELIX 1 AA1 LEU A 36 SER A 39 5 4 HELIX 2 AA2 TRP A 40 GLU A 49 1 10 HELIX 3 AA3 ASP A 72 PHE A 76 5 5 HELIX 4 AA4 SER A 77 ALA A 93 1 17 HELIX 5 AA5 ASP A 105 ARG A 118 1 14 HELIX 6 AA6 ASN A 140 GLY A 150 1 11 HELIX 7 AA7 HIS A 153 PHE A 158 1 6 HELIX 8 AA8 GLY A 162 ALA A 169 1 8 HELIX 9 AA9 GLY A 172 THR A 182 1 11 HELIX 10 AB1 PRO A 204 SER A 209 5 6 HELIX 11 AB2 SER A 212 GLY A 227 1 16 HELIX 12 AB3 PHE A 228 ALA A 237 1 10 HELIX 13 AB4 ALA A 237 THR A 245 1 9 HELIX 14 AB5 ALA A 246 THR A 249 5 4 HELIX 15 AB6 LEU A 266 ILE A 270 5 5 HELIX 16 AB7 GLY A 272 ASN A 279 1 8 HELIX 17 AB8 GLY A 280 VAL A 286 1 7 HELIX 18 AB9 PHE A 301 ARG A 306 1 6 HELIX 19 AC1 ARG A 306 LYS A 320 1 15 HELIX 20 AC2 LEU B 36 SER B 39 5 4 HELIX 21 AC3 TRP B 40 GLU B 49 1 10 HELIX 22 AC4 ASP B 72 PHE B 76 5 5 HELIX 23 AC5 SER B 77 ALA B 93 1 17 HELIX 24 AC6 ASP B 105 ARG B 118 1 14 HELIX 25 AC7 ASN B 140 GLY B 150 1 11 HELIX 26 AC8 HIS B 153 PHE B 158 1 6 HELIX 27 AC9 GLY B 162 ALA B 169 1 8 HELIX 28 AD1 GLY B 172 THR B 182 1 11 HELIX 29 AD2 PRO B 204 SER B 209 5 6 HELIX 30 AD3 SER B 212 GLY B 227 1 16 HELIX 31 AD4 PHE B 228 ALA B 237 1 10 HELIX 32 AD5 ALA B 237 THR B 245 1 9 HELIX 33 AD6 ALA B 246 THR B 249 5 4 HELIX 34 AD7 ASP B 265 ILE B 270 5 6 HELIX 35 AD8 GLY B 272 ASN B 279 1 8 HELIX 36 AD9 GLY B 280 VAL B 286 1 7 HELIX 37 AE1 PHE B 301 ARG B 306 1 6 HELIX 38 AE2 ARG B 306 LYS B 320 1 15 SHEET 1 AA1 8 GLU A 5 VAL A 11 0 SHEET 2 AA1 8 LEU A 14 LEU A 21 -1 O LEU A 18 N LYS A 7 SHEET 3 AA1 8 ARG A 53 PRO A 57 -1 O ALA A 54 N LEU A 21 SHEET 4 AA1 8 THR A 26 ILE A 30 1 N PHE A 29 O VAL A 55 SHEET 5 AA1 8 VAL A 99 HIS A 104 1 O VAL A 102 N ILE A 30 SHEET 6 AA1 8 VAL A 122 LEU A 128 1 O VAL A 126 N VAL A 101 SHEET 7 AA1 8 THR A 257 GLY A 262 1 O LYS A 258 N ASN A 127 SHEET 8 AA1 8 VAL A 293 LEU A 295 1 O LEU A 295 N VAL A 261 SHEET 1 AA2 8 GLU B 5 VAL B 11 0 SHEET 2 AA2 8 LEU B 14 LEU B 21 -1 O MET B 16 N VAL B 9 SHEET 3 AA2 8 ARG B 53 PRO B 57 -1 O ALA B 54 N LEU B 21 SHEET 4 AA2 8 THR B 26 ILE B 30 1 N ILE B 27 O VAL B 55 SHEET 5 AA2 8 VAL B 99 HIS B 104 1 O VAL B 102 N LEU B 28 SHEET 6 AA2 8 VAL B 122 LEU B 128 1 O VAL B 126 N VAL B 101 SHEET 7 AA2 8 THR B 257 GLY B 262 1 O LYS B 258 N LEU B 125 SHEET 8 AA2 8 VAL B 293 LEU B 295 1 O LEU B 295 N VAL B 261 CISPEP 1 PHE A 33 PRO A 34 0 -14.49 CISPEP 2 PHE B 33 PRO B 34 0 -11.79 CRYST1 56.021 96.036 121.551 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017851 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010413 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008227 0.00000