HEADER HYDROLASE 17-FEB-15 4Y9W TITLE ASPARTIC PROTEINASE SAPP2 SECRETED FROM CANDIDA PARAPSILOSIS AT 0.82 A TITLE 2 RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTIC ACID ENDOPEPTIDASE SAPP2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 72-405; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PEPTIDE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA PARAPSILOSIS; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 5480; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630 KEYWDS CANDIDAPEPSIN, ASPARTIC ACID ENDOPEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.DOSTAL,J.BRYNDA,O.HRUSKOVA-HEIDINGSFELDOVA,P.REZACOVA,L.MARECKOVA, AUTHOR 2 I.PICHOVA REVDAT 3 04-SEP-19 4Y9W 1 JRNL REVDAT 2 21-DEC-16 4Y9W 1 REMARK REVDAT 1 30-NOV-16 4Y9W 0 JRNL AUTH J.DOSTAL,A.PECINA,O.HRUSKOVA-HEIDINGSFELDOVA,L.MARECKOVA, JRNL AUTH 2 I.PICHOVA,P.REZACOVA,M.LEPSIK,J.BRYNDA JRNL TITL ATOMIC RESOLUTION CRYSTAL STRUCTURE OF SAPP2P, A SECRETED JRNL TITL 2 ASPARTIC PROTEASE FROM CANDIDA PARAPSILOSIS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 2494 2015 JRNL REFN ESSN 1399-0047 JRNL PMID 26627656 JRNL DOI 10.1107/S1399004715019392 REMARK 2 REMARK 2 RESOLUTION. 0.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 11.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 248399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.117 REMARK 3 R VALUE (WORKING SET) : 0.117 REMARK 3 FREE R VALUE : 0.125 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 13247 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 0.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 12537 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.4090 REMARK 3 BIN FREE R VALUE SET COUNT : 688 REMARK 3 BIN FREE R VALUE : 0.4080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2489 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 391 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.012 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.012 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.007 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.225 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.978 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2801 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1826 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3861 ; 1.913 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4527 ; 1.502 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 393 ; 8.434 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;33.953 ;25.702 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 427 ;10.140 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;18.220 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 444 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3242 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 538 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2777 ; 6.968 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 53 ;21.367 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2962 ; 9.405 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4Y9W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207115. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 261700 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.825 REMARK 200 RESOLUTION RANGE LOW (A) : 11.368 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.37800 REMARK 200 R SYM FOR SHELL (I) : 0.37800 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.83000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE PEPSTATIN IS OLIGOPEPTIDE, A MEMBER OF ENZYME INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: PEPSTATIN REMARK 400 CHAIN: B REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ASN A 252 REMARK 465 SER A 278 REMARK 465 THR A 279 REMARK 465 ALA A 280 REMARK 465 ASN A 281 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 LYS A 176 CE NZ REMARK 470 LEU A 240 CG CD1 CD2 REMARK 470 PRO A 253 N CA CB CG CD REMARK 470 LYS A 315 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 525 O HOH A 866 2.10 REMARK 500 O HOH A 607 O HOH A 861 2.13 REMARK 500 O HOH A 567 O HOH A 762 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 13 CA SER A 13 CB 0.149 REMARK 500 GLU A 125 CD GLU A 125 OE2 0.074 REMARK 500 SER A 258 CB SER A 258 OG -0.158 REMARK 500 ILE A 334 C ILE A 334 OXT 0.160 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 GLN A 48 CB - CG - CD ANGL. DEV. = 25.3 DEGREES REMARK 500 GLN A 54 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 HIS A 61 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 HIS A 61 CB - CG - CD2 ANGL. DEV. = 14.4 DEGREES REMARK 500 HIS A 61 CB - CG - ND1 ANGL. DEV. = -10.1 DEGREES REMARK 500 VAL A 122 CA - CB - CG2 ANGL. DEV. = -9.6 DEGREES REMARK 500 ALA A 158 CA - C - N ANGL. DEV. = 26.0 DEGREES REMARK 500 ALA A 158 O - C - N ANGL. DEV. = -16.4 DEGREES REMARK 500 ALA A 159 C - N - CA ANGL. DEV. = 31.0 DEGREES REMARK 500 THR A 160 N - CA - CB ANGL. DEV. = 12.1 DEGREES REMARK 500 ILE A 223 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 GLU A 236 OE1 - CD - OE2 ANGL. DEV. = 13.6 DEGREES REMARK 500 GLY A 239 C - N - CA ANGL. DEV. = 48.5 DEGREES REMARK 500 GLY A 239 N - CA - C ANGL. DEV. = -21.7 DEGREES REMARK 500 GLY A 241 C - N - CA ANGL. DEV. = 41.4 DEGREES REMARK 500 GLY A 241 CA - C - O ANGL. DEV. = -13.8 DEGREES REMARK 500 GLY A 241 O - C - N ANGL. DEV. = 13.7 DEGREES REMARK 500 ALA A 251 N - CA - CB ANGL. DEV. = -11.1 DEGREES REMARK 500 GLN A 254 N - CA - CB ANGL. DEV. = 11.5 DEGREES REMARK 500 GLN A 277 CB - CG - CD ANGL. DEV. = 23.3 DEGREES REMARK 500 GLN A 277 CA - C - O ANGL. DEV. = -17.3 DEGREES REMARK 500 LYS A 324 CG - CD - CE ANGL. DEV. = 21.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 154 179.48 75.36 REMARK 500 ALA A 159 -38.18 66.15 REMARK 500 ARG A 186 -40.38 -144.54 REMARK 500 ALA A 204 -95.75 -119.04 REMARK 500 ILE A 216 -161.90 -121.07 REMARK 500 PHE A 261 -169.02 -109.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 238 GLY A 239 85.72 REMARK 500 LEU A 240 GLY A 241 -140.86 REMARK 500 STA B 403 ALA B 404 -126.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 STA B 403 29.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide VAL A 401 and IVA A REMARK 800 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide VAL A 402 and STA A REMARK 800 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide STA A 403 and ALA A REMARK 800 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ALA A 404 and STA A REMARK 800 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FV3 RELATED DB: PDB DBREF 4Y9W A 1 334 UNP G8B6Y8 G8B6Y8_CANPC 72 405 DBREF 4Y9W B 400 405 PDB 4Y9W 4Y9W 400 405 SEQRES 1 A 334 SER SER PRO SER SER PRO LEU TYR PHE GLU GLY PRO SER SEQRES 2 A 334 TYR GLY ILE ARG VAL SER VAL GLY SER ASN LYS GLN GLU SEQRES 3 A 334 GLN GLN VAL VAL LEU ASP THR GLY SER SER ASP PHE TRP SEQRES 4 A 334 VAL VAL ASP SER SER ALA SER CYS GLN LYS GLY ASN CYS SEQRES 5 A 334 LYS GLN TYR GLY THR PHE ASP PRO HIS SER SER THR SER SEQRES 6 A 334 PHE LYS SER LEU GLY SER SER PHE SER ILE GLY TYR GLY SEQRES 7 A 334 ASP LYS SER SER SER ILE GLY THR TRP GLY GLN ASP THR SEQRES 8 A 334 ILE TYR LEU GLY GLY THR SER ILE THR ASN GLN ARG PHE SEQRES 9 A 334 ALA ASP VAL THR SER THR SER VAL ASN GLN GLY ILE LEU SEQRES 10 A 334 GLY VAL GLY ARG VAL GLU THR GLU SER ALA ASN PRO PRO SEQRES 11 A 334 TYR ASP ASN VAL PRO ILE THR LEU LYS LYS GLN GLY LYS SEQRES 12 A 334 ILE LYS THR ASN ALA TYR SER LEU TYR LEU ASN SER PRO SEQRES 13 A 334 GLY ALA ALA THR GLY THR ILE ILE PHE GLY GLY VAL ASP SEQRES 14 A 334 ASN ALA LYS TYR SER GLY LYS LEU ILE GLU GLU PRO LEU SEQRES 15 A 334 VAL SER ASP ARG TYR LEU ALA VAL ASN LEU LYS SER LEU SEQRES 16 A 334 ASN TYR ASN GLY ASP ASN SER ASN ALA GLY PHE GLY VAL SEQRES 17 A 334 VAL VAL ASP SER GLY THR THR ILE SER TYR LEU PRO ASP SEQRES 18 A 334 SER ILE VAL ASP ASP LEU ALA ASN LYS VAL GLY ALA TYR SEQRES 19 A 334 LEU GLU PRO VAL GLY LEU GLY ASN GLU LEU TYR PHE ILE SEQRES 20 A 334 ASP CYS ASN ALA ASN PRO GLN GLY SER ALA SER PHE THR SEQRES 21 A 334 PHE ASP ASN GLY ALA LYS ILE THR VAL PRO LEU SER GLU SEQRES 22 A 334 PHE VAL LEU GLN SER THR ALA ASN ALA CYS VAL TRP GLY SEQRES 23 A 334 LEU GLN SER SER ASP ARG GLN ASN VAL PRO PRO ILE LEU SEQRES 24 A 334 GLY ASP ASN PHE LEU ARG HIS ALA TYR VAL VAL PHE ASN SEQRES 25 A 334 LEU ASP LYS GLU THR VAL SER LEU ALA GLN VAL LYS TYR SEQRES 26 A 334 THR SER ALA SER SER VAL SER ALA ILE SEQRES 1 B 6 IVA VAL VAL STA ALA STA HET IVA B 400 6 HET STA B 403 11 HET STA B 405 12 HETNAM IVA ISOVALERIC ACID HETNAM STA STATINE FORMUL 2 IVA C5 H10 O2 FORMUL 2 STA 2(C8 H17 N O3) FORMUL 3 HOH *391(H2 O) HELIX 1 AA1 ASP A 59 SER A 63 5 5 HELIX 2 AA2 ARG A 121 GLU A 125 5 5 HELIX 3 AA3 ASN A 133 GLN A 141 1 9 HELIX 4 AA4 PRO A 220 GLY A 232 1 13 HELIX 5 AA5 SER A 290 ASN A 294 1 5 HELIX 6 AA6 GLY A 300 ARG A 305 1 6 SHEET 1 AA1 9 LYS A 67 GLY A 76 0 SHEET 2 AA1 9 SER A 82 LEU A 94 -1 O TRP A 87 N SER A 71 SHEET 3 AA1 9 TYR A 14 VAL A 20 -1 N SER A 19 O TYR A 93 SHEET 4 AA1 9 SER A 4 PHE A 9 -1 N TYR A 8 O GLY A 15 SHEET 5 AA1 9 THR A 160 PHE A 165 -1 O ILE A 163 N SER A 5 SHEET 6 AA1 9 ALA A 148 TYR A 152 -1 N TYR A 152 O THR A 162 SHEET 7 AA1 9 ALA A 307 ASN A 312 -1 O VAL A 309 N LEU A 151 SHEET 8 AA1 9 THR A 317 GLN A 322 -1 O THR A 317 N ASN A 312 SHEET 9 AA1 9 ILE A 178 PRO A 181 -1 N ILE A 178 O LEU A 320 SHEET 1 AA213 LYS A 67 GLY A 76 0 SHEET 2 AA213 SER A 82 LEU A 94 -1 O TRP A 87 N SER A 71 SHEET 3 AA213 THR A 97 THR A 110 -1 O PHE A 104 N GLY A 88 SHEET 4 AA213 PHE A 38 CYS A 47 1 N SER A 46 O THR A 108 SHEET 5 AA213 ILE A 116 GLY A 118 -1 O ILE A 116 N TRP A 39 SHEET 6 AA213 GLN A 25 ASP A 32 1 N VAL A 30 O LEU A 117 SHEET 7 AA213 TYR A 14 VAL A 20 -1 N ILE A 16 O VAL A 29 SHEET 8 AA213 SER A 4 PHE A 9 -1 N TYR A 8 O GLY A 15 SHEET 9 AA213 THR A 160 PHE A 165 -1 O ILE A 163 N SER A 5 SHEET 10 AA213 ALA A 148 TYR A 152 -1 N TYR A 152 O THR A 162 SHEET 11 AA213 ALA A 307 ASN A 312 -1 O VAL A 309 N LEU A 151 SHEET 12 AA213 THR A 317 GLN A 322 -1 O THR A 317 N ASN A 312 SHEET 13 AA213 ILE A 178 PRO A 181 -1 N ILE A 178 O LEU A 320 SHEET 1 AA3 2 GLY A 167 ASP A 169 0 SHEET 2 AA3 2 VAL A 331 ALA A 333 -1 O SER A 332 N VAL A 168 SHEET 1 AA4 5 LYS A 266 PRO A 270 0 SHEET 2 AA4 5 SER A 256 PHE A 261 -1 N PHE A 259 O ILE A 267 SHEET 3 AA4 5 ALA A 189 TYR A 197 -1 N ASN A 196 O SER A 258 SHEET 4 AA4 5 ASP A 200 VAL A 210 -1 O PHE A 206 N LEU A 192 SHEET 5 AA4 5 ILE A 298 LEU A 299 1 O LEU A 299 N VAL A 209 SHEET 1 AA5 2 SER A 217 LEU A 219 0 SHEET 2 AA5 2 LEU A 287 SER A 289 1 O GLN A 288 N LEU A 219 SHEET 1 AA6 4 TYR A 234 PRO A 237 0 SHEET 2 AA6 4 GLU A 243 ILE A 247 -1 O PHE A 246 N TYR A 234 SHEET 3 AA6 4 CYS A 283 TRP A 285 -1 O CYS A 283 N ILE A 247 SHEET 4 AA6 4 VAL A 275 LEU A 276 -1 N LEU A 276 O VAL A 284 SSBOND 1 CYS A 47 CYS A 52 1555 1555 2.07 SSBOND 2 CYS A 249 CYS A 283 1555 1555 2.06 LINK C IVA B 400 N VAL B 401 1555 1555 1.30 LINK C VAL B 402 N STA B 403 1555 1555 1.34 LINK C STA B 403 N ALA B 404 1555 1555 1.31 LINK C ALA B 404 N STA B 405 1555 1555 1.32 CISPEP 1 ASN A 128 PRO A 129 0 4.96 CISPEP 2 ASN A 128 PRO A 129 0 8.78 CISPEP 3 GLY A 239 LEU A 240 0 -6.96 SITE 1 AC1 10 SER A 13 ASP A 79 GLY A 213 THR A 214 SITE 2 AC1 10 THR A 215 TYR A 218 HOH B 501 HOH A 568 SITE 3 AC1 10 HOH B 505 HOH B 506 SITE 1 AC2 10 ASP A 32 GLY A 34 TYR A 77 GLY A 78 SITE 2 AC2 10 ASP A 79 ASP A 211 GLY A 213 THR A 214 SITE 3 AC2 10 TYR A 218 ILE A 298 SITE 1 AC3 8 ASP A 32 GLY A 34 TYR A 77 GLY A 78 SITE 2 AC3 8 TYR A 187 ASP A 211 GLY A 213 THR A 214 SITE 1 AC4 8 GLY A 34 GLY A 76 TYR A 77 ARG A 186 SITE 2 AC4 8 TYR A 187 HOH B 502 HOH B 503 HOH B 504 CRYST1 48.260 57.660 54.360 90.00 92.95 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020721 0.000000 0.001068 0.00000 SCALE2 0.000000 0.017343 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018420 0.00000