data_4YB1 # _entry.id 4YB1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4YB1 pdb_00004yb1 10.2210/pdb4yb1/pdb WWPDB D_1000207149 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-04-15 2 'Structure model' 1 1 2015-04-22 3 'Structure model' 1 2 2015-07-22 4 'Structure model' 1 3 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Non-polymer description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Source and taxonomy' 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' entity_src_gen 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' pdbx_struct_oper_list 8 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.pdbx_synonyms' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_entity_src_gen.pdbx_alt_source_flag' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.value' 8 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 9 4 'Structure model' '_struct_conn.pdbx_dist_value' 10 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4YB1 _pdbx_database_status.recvd_initial_deposition_date 2015-02-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 4YAZ unspecified PDB . 4YB0 unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ren, A.M.' 1 'Patel, D.J.' 2 'Rajashankar, R.K.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2211-1247 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 11 _citation.language ? _citation.page_first 1 _citation.page_last 12 _citation.title ;Structural Basis for Molecular Discrimination by a 3',3'-cGAMP Sensing Riboswitch. ; _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.celrep.2015.03.004 _citation.pdbx_database_id_PubMed 25818298 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ren, A.' 1 ? primary 'Wang, X.C.' 2 ? primary 'Kellenberger, C.A.' 3 ? primary 'Rajashankar, K.R.' 4 ? primary 'Jones, R.A.' 5 ? primary 'Hammond, M.C.' 6 ? primary 'Patel, D.J.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA (91-MER)' 29460.648 1 ? ? ? ? 2 polymer man 'U1 small nuclear ribonucleoprotein A' 10695.579 1 ? ? 'UNP residues 7-97' ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 non-polymer syn ;2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one ; 674.411 1 ? ? ? ? 5 water nat water 18.015 11 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name U1A # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no ;GGGCACGCACAGAGCAAACCAUUCGAAAGAGUGGGACGCAAAGCCUCCGGCCUAAACCAUUGCACCUCGGUAGGUAGCGG GGUUACCGAUG ; ;GGGCACGCACAGAGCAAACCAUUCGAAAGAGUGGGACGCAAAGCCUCCGGCCUAAACCAUUGCACCUCGGUAGGUAGCGG GGUUACCGAUG ; R ? 2 'polypeptide(L)' no no ;RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVKRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY AKTDSDIIAKMA ; ;RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVKRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY AKTDSDIIAKMA ; P ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 ;2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one ; 4BW 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 C n 1 5 A n 1 6 C n 1 7 G n 1 8 C n 1 9 A n 1 10 C n 1 11 A n 1 12 G n 1 13 A n 1 14 G n 1 15 C n 1 16 A n 1 17 A n 1 18 A n 1 19 C n 1 20 C n 1 21 A n 1 22 U n 1 23 U n 1 24 C n 1 25 G n 1 26 A n 1 27 A n 1 28 A n 1 29 G n 1 30 A n 1 31 G n 1 32 U n 1 33 G n 1 34 G n 1 35 G n 1 36 A n 1 37 C n 1 38 G n 1 39 C n 1 40 A n 1 41 A n 1 42 A n 1 43 G n 1 44 C n 1 45 C n 1 46 U n 1 47 C n 1 48 C n 1 49 G n 1 50 G n 1 51 C n 1 52 C n 1 53 U n 1 54 A n 1 55 A n 1 56 A n 1 57 C n 1 58 C n 1 59 A n 1 60 U n 1 61 U n 1 62 G n 1 63 C n 1 64 A n 1 65 C n 1 66 C n 1 67 U n 1 68 C n 1 69 G n 1 70 G n 1 71 U n 1 72 A n 1 73 G n 1 74 G n 1 75 U n 1 76 A n 1 77 G n 1 78 C n 1 79 G n 1 80 G n 1 81 G n 1 82 G n 1 83 U n 1 84 U n 1 85 A n 1 86 C n 1 87 C n 1 88 G n 1 89 A n 1 90 U n 1 91 G n 2 1 ARG n 2 2 PRO n 2 3 ASN n 2 4 HIS n 2 5 THR n 2 6 ILE n 2 7 TYR n 2 8 ILE n 2 9 ASN n 2 10 ASN n 2 11 LEU n 2 12 ASN n 2 13 GLU n 2 14 LYS n 2 15 ILE n 2 16 LYS n 2 17 LYS n 2 18 ASP n 2 19 GLU n 2 20 LEU n 2 21 LYS n 2 22 LYS n 2 23 SER n 2 24 LEU n 2 25 HIS n 2 26 ALA n 2 27 ILE n 2 28 PHE n 2 29 SER n 2 30 ARG n 2 31 PHE n 2 32 GLY n 2 33 GLN n 2 34 ILE n 2 35 LEU n 2 36 ASP n 2 37 ILE n 2 38 LEU n 2 39 VAL n 2 40 LYS n 2 41 ARG n 2 42 SER n 2 43 LEU n 2 44 LYS n 2 45 MET n 2 46 ARG n 2 47 GLY n 2 48 GLN n 2 49 ALA n 2 50 PHE n 2 51 VAL n 2 52 ILE n 2 53 PHE n 2 54 LYS n 2 55 GLU n 2 56 VAL n 2 57 SER n 2 58 SER n 2 59 ALA n 2 60 THR n 2 61 ASN n 2 62 ALA n 2 63 LEU n 2 64 ARG n 2 65 SER n 2 66 MET n 2 67 GLN n 2 68 GLY n 2 69 PHE n 2 70 PRO n 2 71 PHE n 2 72 TYR n 2 73 ASP n 2 74 LYS n 2 75 PRO n 2 76 MET n 2 77 ARG n 2 78 ILE n 2 79 GLN n 2 80 TYR n 2 81 ALA n 2 82 LYS n 2 83 THR n 2 84 ASP n 2 85 SER n 2 86 ASP n 2 87 ILE n 2 88 ILE n 2 89 ALA n 2 90 LYS n 2 91 MET n 2 92 ALA n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 91 ? ? ? ? ? ? ? ? ? 'Vibrio cholerae' 666 ? ? ? ? ? ? ? ? 'in vitro transcription vector pT7-Fluc(deltai)' 905932 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 92 Human ? SNRPA ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 511693 ? ? ? ? ? ? BL21 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4BW non-polymer . ;2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one ; ;3',3' cGAMP; c-GMP-AMP; c[G(3',5')pA(3',5')p] ; 'C20 H24 N10 O13 P2' 674.411 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 8 8 G G R . n A 1 2 G 2 9 9 G G R . n A 1 3 G 3 10 10 G G R . n A 1 4 C 4 11 11 C C R . n A 1 5 A 5 12 12 A A R . n A 1 6 C 6 13 13 C C R . n A 1 7 G 7 14 14 G G R . n A 1 8 C 8 15 15 C C R . n A 1 9 A 9 16 16 A A R . n A 1 10 C 10 17 17 C C R . n A 1 11 A 11 18 18 A A R . n A 1 12 G 12 19 19 G G R . n A 1 13 A 13 20 20 A A R . n A 1 14 G 14 21 21 G G R . n A 1 15 C 15 22 22 C C R . n A 1 16 A 16 23 23 A A R . n A 1 17 A 17 24 24 A A R . n A 1 18 A 18 25 25 A A R . n A 1 19 C 19 26 26 C C R . n A 1 20 C 20 27 27 C C R . n A 1 21 A 21 28 28 A A R . n A 1 22 U 22 29 29 U U R . n A 1 23 U 23 30 30 U U R . n A 1 24 C 24 31 31 C C R . n A 1 25 G 25 32 32 G G R . n A 1 26 A 26 33 33 A A R . n A 1 27 A 27 34 34 A A R . n A 1 28 A 28 35 35 A A R . n A 1 29 G 29 36 36 G G R . n A 1 30 A 30 37 37 A A R . n A 1 31 G 31 38 38 G G R . n A 1 32 U 32 39 39 U U R . n A 1 33 G 33 40 40 G G R . n A 1 34 G 34 41 41 G G R . n A 1 35 G 35 42 42 G G R . n A 1 36 A 36 43 43 A A R . n A 1 37 C 37 44 44 C C R . n A 1 38 G 38 45 45 G G R . n A 1 39 C 39 46 46 C C R . n A 1 40 A 40 47 47 A A R . n A 1 41 A 41 48 48 A A R . n A 1 42 A 42 49 49 A A R . n A 1 43 G 43 50 50 G G R . n A 1 44 C 44 51 51 C C R . n A 1 45 C 45 52 52 C C R . n A 1 46 U 46 53 53 U U R . n A 1 47 C 47 54 54 C C R . n A 1 48 C 48 55 55 C C R . n A 1 49 G 49 56 56 G G R . n A 1 50 G 50 57 57 G G R . n A 1 51 C 51 58 58 C C R . n A 1 52 C 52 59 59 C C R . n A 1 53 U 53 60 60 U U R . n A 1 54 A 54 61 61 A A R . n A 1 55 A 55 62 62 A A R . n A 1 56 A 56 63 63 A A R . n A 1 57 C 57 64 64 C C R . n A 1 58 C 58 65 65 C C R . n A 1 59 A 59 66 66 A A R . n A 1 60 U 60 67 67 U U R . n A 1 61 U 61 68 68 U U R . n A 1 62 G 62 69 69 G G R . n A 1 63 C 63 70 70 C C R . n A 1 64 A 64 71 71 A A R . n A 1 65 C 65 72 72 C C R . n A 1 66 C 66 73 73 C C R . n A 1 67 U 67 74 74 U U R . n A 1 68 C 68 75 75 C C R . n A 1 69 G 69 76 76 G G R . n A 1 70 G 70 77 77 G G R . n A 1 71 U 71 78 78 U U R . n A 1 72 A 72 79 79 A A R . n A 1 73 G 73 80 80 G G R . n A 1 74 G 74 81 81 G G R . n A 1 75 U 75 82 82 U U R . n A 1 76 A 76 83 83 A A R . n A 1 77 G 77 84 84 G G R . n A 1 78 C 78 85 85 C C R . n A 1 79 G 79 86 86 G G R . n A 1 80 G 80 87 87 G G R . n A 1 81 G 81 88 88 G G R . n A 1 82 G 82 89 89 G G R . n A 1 83 U 83 90 90 U U R . n A 1 84 U 84 91 91 U U R . n A 1 85 A 85 92 92 A A R . n A 1 86 C 86 93 93 C C R . n A 1 87 C 87 94 94 C C R . n A 1 88 G 88 95 95 G G R . n A 1 89 A 89 96 96 A A R . n A 1 90 U 90 97 97 U U R . n A 1 91 G 91 98 98 G G R . n B 2 1 ARG 1 7 7 ARG ARG P . n B 2 2 PRO 2 8 8 PRO PRO P . n B 2 3 ASN 3 9 9 ASN ASN P . n B 2 4 HIS 4 10 10 HIS HIS P . n B 2 5 THR 5 11 11 THR THR P . n B 2 6 ILE 6 12 12 ILE ILE P . n B 2 7 TYR 7 13 13 TYR TYR P . n B 2 8 ILE 8 14 14 ILE ILE P . n B 2 9 ASN 9 15 15 ASN ASN P . n B 2 10 ASN 10 16 16 ASN ASN P . n B 2 11 LEU 11 17 17 LEU LEU P . n B 2 12 ASN 12 18 18 ASN ASN P . n B 2 13 GLU 13 19 19 GLU GLU P . n B 2 14 LYS 14 20 20 LYS LYS P . n B 2 15 ILE 15 21 21 ILE ILE P . n B 2 16 LYS 16 22 22 LYS LYS P . n B 2 17 LYS 17 23 23 LYS LYS P . n B 2 18 ASP 18 24 24 ASP ASP P . n B 2 19 GLU 19 25 25 GLU GLU P . n B 2 20 LEU 20 26 26 LEU LEU P . n B 2 21 LYS 21 27 27 LYS LYS P . n B 2 22 LYS 22 28 28 LYS LYS P . n B 2 23 SER 23 29 29 SER SER P . n B 2 24 LEU 24 30 30 LEU LEU P . n B 2 25 HIS 25 31 31 HIS HIS P . n B 2 26 ALA 26 32 32 ALA ALA P . n B 2 27 ILE 27 33 33 ILE ILE P . n B 2 28 PHE 28 34 34 PHE PHE P . n B 2 29 SER 29 35 35 SER SER P . n B 2 30 ARG 30 36 36 ARG ARG P . n B 2 31 PHE 31 37 37 PHE PHE P . n B 2 32 GLY 32 38 38 GLY GLY P . n B 2 33 GLN 33 39 39 GLN GLN P . n B 2 34 ILE 34 40 40 ILE ILE P . n B 2 35 LEU 35 41 41 LEU LEU P . n B 2 36 ASP 36 42 42 ASP ASP P . n B 2 37 ILE 37 43 43 ILE ILE P . n B 2 38 LEU 38 44 44 LEU LEU P . n B 2 39 VAL 39 45 45 VAL VAL P . n B 2 40 LYS 40 46 46 LYS LYS P . n B 2 41 ARG 41 47 47 ARG ARG P . n B 2 42 SER 42 48 48 SER SER P . n B 2 43 LEU 43 49 49 LEU LEU P . n B 2 44 LYS 44 50 50 LYS LYS P . n B 2 45 MET 45 51 51 MET MET P . n B 2 46 ARG 46 52 52 ARG ARG P . n B 2 47 GLY 47 53 53 GLY GLY P . n B 2 48 GLN 48 54 54 GLN GLN P . n B 2 49 ALA 49 55 55 ALA ALA P . n B 2 50 PHE 50 56 56 PHE PHE P . n B 2 51 VAL 51 57 57 VAL VAL P . n B 2 52 ILE 52 58 58 ILE ILE P . n B 2 53 PHE 53 59 59 PHE PHE P . n B 2 54 LYS 54 60 60 LYS LYS P . n B 2 55 GLU 55 61 61 GLU GLU P . n B 2 56 VAL 56 62 62 VAL VAL P . n B 2 57 SER 57 63 63 SER SER P . n B 2 58 SER 58 64 64 SER SER P . n B 2 59 ALA 59 65 65 ALA ALA P . n B 2 60 THR 60 66 66 THR THR P . n B 2 61 ASN 61 67 67 ASN ASN P . n B 2 62 ALA 62 68 68 ALA ALA P . n B 2 63 LEU 63 69 69 LEU LEU P . n B 2 64 ARG 64 70 70 ARG ARG P . n B 2 65 SER 65 71 71 SER SER P . n B 2 66 MET 66 72 72 MET MET P . n B 2 67 GLN 67 73 73 GLN GLN P . n B 2 68 GLY 68 74 74 GLY GLY P . n B 2 69 PHE 69 75 75 PHE PHE P . n B 2 70 PRO 70 76 76 PRO PRO P . n B 2 71 PHE 71 77 77 PHE PHE P . n B 2 72 TYR 72 78 78 TYR TYR P . n B 2 73 ASP 73 79 79 ASP ASP P . n B 2 74 LYS 74 80 80 LYS LYS P . n B 2 75 PRO 75 81 81 PRO PRO P . n B 2 76 MET 76 82 82 MET MET P . n B 2 77 ARG 77 83 83 ARG ARG P . n B 2 78 ILE 78 84 84 ILE ILE P . n B 2 79 GLN 79 85 85 GLN GLN P . n B 2 80 TYR 80 86 86 TYR TYR P . n B 2 81 ALA 81 87 87 ALA ALA P . n B 2 82 LYS 82 88 88 LYS LYS P . n B 2 83 THR 83 89 89 THR THR P . n B 2 84 ASP 84 90 90 ASP ASP P . n B 2 85 SER 85 91 91 SER SER P . n B 2 86 ASP 86 92 92 ASP ASP P . n B 2 87 ILE 87 93 93 ILE ILE P . n B 2 88 ILE 88 94 94 ILE ILE P . n B 2 89 ALA 89 95 95 ALA ALA P . n B 2 90 LYS 90 96 96 LYS LYS P . n B 2 91 MET 91 97 97 MET MET P . n B 2 92 ALA 92 98 98 ALA ALA P . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 101 2 MG MG R . D 4 4BW 1 102 1 4BW 2BX R . E 5 HOH 1 201 10 HOH HOH R . E 5 HOH 2 202 2 HOH HOH R . E 5 HOH 3 203 5 HOH HOH R . E 5 HOH 4 204 8 HOH HOH R . E 5 HOH 5 205 4 HOH HOH R . E 5 HOH 6 206 3 HOH HOH R . E 5 HOH 7 207 6 HOH HOH R . E 5 HOH 8 208 1 HOH HOH R . E 5 HOH 9 209 7 HOH HOH R . E 5 HOH 10 210 11 HOH HOH R . E 5 HOH 11 211 9 HOH HOH R . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.8.4_1496 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.entry_id 4YB1 _cell.length_a 51.738 _cell.length_b 46.836 _cell.length_c 80.791 _cell.angle_alpha 90.00 _cell.angle_beta 90.44 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YB1 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4YB1 _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M Na-citrate pH 5.5, 5% PEG1000, 35% iso-propanol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-02-10 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4YB1 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.08 _reflns.d_resolution_low 46.8 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 17467 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 0.6 _reflns.percent_possible_obs 75.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.0 _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.08 _reflns_shell.d_res_low 2.14 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.6 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 42.2 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 1.2 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4YB1 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 17405 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.722 _refine.ls_d_res_high 2.081 _refine.ls_percent_reflns_obs 74.05 _refine.ls_R_factor_obs 0.2223 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2182 _refine.ls_R_factor_R_free 0.2985 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.07 _refine.ls_number_reflns_R_free 882 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.47 _refine.pdbx_overall_phase_error 43.19 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 750 _refine_hist.pdbx_number_atoms_nucleic_acid 1954 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 11 _refine_hist.number_atoms_total 2761 _refine_hist.d_res_high 2.081 _refine_hist.d_res_low 43.722 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.012 ? ? 3006 'X-RAY DIFFRACTION' ? f_angle_d 1.223 ? ? 4510 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 18.678 ? ? 1402 'X-RAY DIFFRACTION' ? f_chiral_restr 0.055 ? ? 575 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 221 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.081 2.2117 1968 0.3431 54.00 0.3954 . . 106 . . . . 'X-RAY DIFFRACTION' . 2.2117 2.3825 3046 0.3630 83.00 0.4334 . . 169 . . . . 'X-RAY DIFFRACTION' . 2.3825 2.6222 2937 0.3589 79.00 0.4734 . . 156 . . . . 'X-RAY DIFFRACTION' . 2.6222 3.0015 2951 0.3211 80.00 0.4279 . . 155 . . . . 'X-RAY DIFFRACTION' . 3.0015 3.7813 2854 0.2000 77.00 0.2649 . . 149 . . . . 'X-RAY DIFFRACTION' . 3.7813 43.7321 2767 0.1505 72.00 0.2262 . . 147 . . . . # _struct.entry_id 4YB1 _struct.title ;20A Mutant c-di-GMP Vc2 Riboswitch bound with 3',3'-cGAMP ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4YB1 _struct_keywords.text ;riboswitch, 3', 3'-cGAMP, spinach, RNA structure, c-di-GMP, RNA-RNA BINDING PROTEIN complex ; _struct_keywords.pdbx_keywords 'RNA/RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # loop_ _struct_ref.db_code _struct_ref.db_name _struct_ref.details _struct_ref.entity_id _struct_ref.id _struct_ref.seq_align _struct_ref.seq_dif _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_align_end 4YB1 PDB ? 1 1 ? ? 4YB1 ? ? 1 ? SNRPA_HUMAN UNP ? 2 2 ? ? P09012 ? ;RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY AKTDSDIIAKM ; 7 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4YB1 R 1 ? 91 ? 4YB1 8 ? 98 ? 8 98 2 2 4YB1 P 1 ? 91 ? P09012 7 ? 97 ? 7 97 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 4YB1 HIS P 25 ? UNP P09012 TYR 31 conflict 31 1 2 4YB1 ARG P 30 ? UNP P09012 GLN 36 conflict 36 2 2 4YB1 LYS P 40 ? UNP P09012 SER 46 conflict 46 3 2 4YB1 ALA P 92 ? UNP P09012 ? ? 'expression tag' 98 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 450 ? 1 MORE -15 ? 1 'SSA (A^2)' 20580 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS B 16 ? SER B 29 ? LYS P 22 SER P 35 1 ? 14 HELX_P HELX_P2 AA2 GLU B 55 ? GLN B 67 ? GLU P 61 GLN P 73 1 ? 13 HELX_P HELX_P3 AA3 SER B 85 ? ALA B 92 ? SER P 91 ALA P 98 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 35 O6 ? ? ? 1_555 C MG . MG ? ? R G 42 R MG 101 1_555 ? ? ? ? ? ? ? 2.608 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? R MG 101 R HOH 203 1_555 ? ? ? ? ? ? ? 2.096 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? R MG 101 R HOH 206 1_555 ? ? ? ? ? ? ? 2.127 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? R MG 101 R HOH 207 1_555 ? ? ? ? ? ? ? 2.066 ? ? hydrog1 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 91 N2 ? ? R C 11 R G 98 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog2 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 90 N3 ? ? R A 12 R U 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 90 O4 ? ? R A 12 R U 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 88 N1 ? ? R C 13 R G 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 88 O6 ? ? R C 13 R G 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 88 N2 ? ? R C 13 R G 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 7 N2 ? ? ? 1_555 A A 9 N7 ? ? R G 14 R A 16 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog8 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 87 N3 ? ? R G 14 R C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 87 O2 ? ? R G 14 R C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 87 N4 ? ? R G 14 R C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 10 N4 ? ? ? 1_555 A C 87 O2 ? ? R C 17 R C 94 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog12 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 39 N3 ? ? R G 21 R C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 39 O2 ? ? R G 21 R C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 39 N4 ? ? R G 21 R C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 38 N1 ? ? R C 22 R G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 38 O6 ? ? R C 22 R G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 38 N2 ? ? R C 22 R G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 16 N3 ? ? ? 1_555 A C 37 N4 ? ? R A 23 R C 44 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog19 hydrog ? ? A A 18 N6 ? ? ? 1_555 A G 35 N3 ? ? R A 25 R G 42 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog20 hydrog ? ? A A 18 N7 ? ? ? 1_555 A G 35 N2 ? ? R A 25 R G 42 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog21 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 34 N1 ? ? R C 26 R G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 34 O6 ? ? R C 26 R G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 34 N2 ? ? R C 26 R G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 33 N1 ? ? R C 27 R G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 33 O6 ? ? R C 27 R G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 33 N2 ? ? R C 27 R G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 21 N1 ? ? ? 1_555 A U 32 N3 ? ? R A 28 R U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 21 N6 ? ? ? 1_555 A U 32 O4 ? ? R A 28 R U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 22 N3 ? ? ? 1_555 A G 31 O6 ? ? R U 29 R G 38 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog30 hydrog ? ? A U 22 O2 ? ? ? 1_555 A G 31 N1 ? ? R U 29 R G 38 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog31 hydrog ? ? A U 23 N3 ? ? ? 1_555 A A 30 N1 ? ? R U 30 R A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 23 O4 ? ? ? 1_555 A A 30 N6 ? ? R U 30 R A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 29 N1 ? ? R C 31 R G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 29 O6 ? ? R C 31 R G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 29 N2 ? ? R C 31 R G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 25 N2 ? ? ? 1_555 A A 28 N7 ? ? R G 32 R A 35 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog37 hydrog ? ? A A 28 N3 ? ? ? 1_555 A G 73 N2 ? ? R A 35 R G 80 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog38 hydrog ? ? A C 37 N3 ? ? ? 1_555 A G 77 N1 ? ? R C 44 R G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 37 N4 ? ? ? 1_555 A G 77 O6 ? ? R C 44 R G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 37 O2 ? ? ? 1_555 A G 77 N2 ? ? R C 44 R G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 38 N2 ? ? ? 1_555 A A 42 N3 ? ? R G 45 R A 49 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog42 hydrog ? ? A A 41 N6 ? ? ? 1_555 A U 84 O2 ? ? R A 48 R U 91 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog43 hydrog ? ? A A 41 N7 ? ? ? 1_555 A U 84 N3 ? ? R A 48 R U 91 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog44 hydrog ? ? A G 43 N1 ? ? ? 1_555 A U 83 O2 ? ? R G 50 R U 90 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog45 hydrog ? ? A G 43 O6 ? ? ? 1_555 A U 83 N3 ? ? R G 50 R U 90 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog46 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 82 N1 ? ? R C 51 R G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 82 O6 ? ? R C 51 R G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 82 N2 ? ? R C 51 R G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 45 N3 ? ? ? 1_555 A G 81 N1 ? ? R C 52 R G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 45 N4 ? ? ? 1_555 A G 81 O6 ? ? R C 52 R G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 45 O2 ? ? ? 1_555 A G 81 N2 ? ? R C 52 R G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A U 46 O2 ? ? ? 1_555 A C 48 N4 ? ? R U 53 R C 55 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog53 hydrog ? ? A C 47 N4 ? ? ? 1_555 A A 76 N1 ? ? R C 54 R A 83 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog54 hydrog ? ? A C 47 N3 ? ? ? 1_555 A G 80 N1 ? ? R C 54 R G 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 47 N4 ? ? ? 1_555 A G 80 O6 ? ? R C 54 R G 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 47 O2 ? ? ? 1_555 A G 80 N2 ? ? R C 54 R G 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 48 N3 ? ? ? 1_555 A G 79 N1 ? ? R C 55 R G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 48 N4 ? ? ? 1_555 A G 79 O6 ? ? R C 55 R G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 48 O2 ? ? ? 1_555 A G 79 N2 ? ? R C 55 R G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 49 N1 ? ? ? 1_555 A C 78 N3 ? ? R G 56 R C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 49 N2 ? ? ? 1_555 A C 78 O2 ? ? R G 56 R C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 49 O6 ? ? ? 1_555 A C 78 N4 ? ? R G 56 R C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 50 N1 ? ? ? 1_555 A U 75 O2 ? ? R G 57 R U 82 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog64 hydrog ? ? A G 50 O6 ? ? ? 1_555 A U 75 N3 ? ? R G 57 R U 82 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog65 hydrog ? ? A C 51 N3 ? ? ? 1_555 A G 74 N1 ? ? R C 58 R G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 51 N4 ? ? ? 1_555 A G 74 O6 ? ? R C 58 R G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 51 O2 ? ? ? 1_555 A G 74 N2 ? ? R C 58 R G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 52 N3 ? ? ? 1_555 A G 73 N1 ? ? R C 59 R G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 52 N4 ? ? ? 1_555 A G 73 O6 ? ? R C 59 R G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 52 O2 ? ? ? 1_555 A G 73 N2 ? ? R C 59 R G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A U 53 N3 ? ? ? 1_555 A A 72 N1 ? ? R U 60 R A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A U 53 O4 ? ? ? 1_555 A A 72 N6 ? ? R U 60 R A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A A 56 N6 ? ? ? 1_555 A U 71 O2 ? ? R A 63 R U 78 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog74 hydrog ? ? A C 57 N3 ? ? ? 1_555 A G 70 N1 ? ? R C 64 R G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A C 57 N4 ? ? ? 1_555 A G 70 O6 ? ? R C 64 R G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 57 O2 ? ? ? 1_555 A G 70 N2 ? ? R C 64 R G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 58 N3 ? ? ? 1_555 A G 69 N1 ? ? R C 65 R G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 58 N4 ? ? ? 1_555 A G 69 O6 ? ? R C 65 R G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A C 58 O2 ? ? ? 1_555 A G 69 N2 ? ? R C 65 R G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 88 N1 ? ? ? 1_555 A U 90 O4 ? ? R G 95 R U 97 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 35 ? R G 42 ? 1_555 MG ? C MG . ? R MG 101 ? 1_555 O ? E HOH . ? R HOH 203 ? 1_555 98.8 ? 2 O6 ? A G 35 ? R G 42 ? 1_555 MG ? C MG . ? R MG 101 ? 1_555 O ? E HOH . ? R HOH 206 ? 1_555 164.5 ? 3 O ? E HOH . ? R HOH 203 ? 1_555 MG ? C MG . ? R MG 101 ? 1_555 O ? E HOH . ? R HOH 206 ? 1_555 95.7 ? 4 O6 ? A G 35 ? R G 42 ? 1_555 MG ? C MG . ? R MG 101 ? 1_555 O ? E HOH . ? R HOH 207 ? 1_555 79.9 ? 5 O ? E HOH . ? R HOH 203 ? 1_555 MG ? C MG . ? R MG 101 ? 1_555 O ? E HOH . ? R HOH 207 ? 1_555 108.4 ? 6 O ? E HOH . ? R HOH 206 ? 1_555 MG ? C MG . ? R MG 101 ? 1_555 O ? E HOH . ? R HOH 207 ? 1_555 90.3 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE B 34 ? LYS B 40 ? ILE P 40 LYS P 46 AA1 2 GLN B 48 ? PHE B 53 ? GLN P 54 PHE P 59 AA1 3 THR B 5 ? ASN B 9 ? THR P 11 ASN P 15 AA1 4 ARG B 77 ? TYR B 80 ? ARG P 83 TYR P 86 AA2 1 PRO B 70 ? PHE B 71 ? PRO P 76 PHE P 77 AA2 2 LYS B 74 ? PRO B 75 ? LYS P 80 PRO P 81 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ASP B 36 ? N ASP P 42 O ILE B 52 ? O ILE P 58 AA1 2 3 O ALA B 49 ? O ALA P 55 N ILE B 8 ? N ILE P 14 AA1 3 4 N ASN B 9 ? N ASN P 15 O ARG B 77 ? O ARG P 83 AA2 1 2 N PHE B 71 ? N PHE P 77 O LYS B 74 ? O LYS P 80 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software R MG 101 ? 4 'binding site for residue MG R 101' AC2 Software R 4BW 102 ? 10 'binding site for residue 4BW R 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 G A 35 ? G R 42 . ? 1_555 ? 2 AC1 4 HOH E . ? HOH R 203 . ? 1_555 ? 3 AC1 4 HOH E . ? HOH R 206 . ? 1_555 ? 4 AC1 4 HOH E . ? HOH R 207 . ? 1_555 ? 5 AC2 10 G A 7 ? G R 14 . ? 1_555 ? 6 AC2 10 A A 9 ? A R 16 . ? 1_555 ? 7 AC2 10 C A 10 ? C R 17 . ? 1_555 ? 8 AC2 10 A A 11 ? A R 18 . ? 1_555 ? 9 AC2 10 A A 13 ? A R 20 . ? 1_555 ? 10 AC2 10 G A 14 ? G R 21 . ? 1_555 ? 11 AC2 10 C A 39 ? C R 46 . ? 1_555 ? 12 AC2 10 A A 40 ? A R 47 . ? 1_555 ? 13 AC2 10 C A 86 ? C R 93 . ? 1_555 ? 14 AC2 10 C A 87 ? C R 94 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 R _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 202 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 R _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 204 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.14 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OP2 _pdbx_validate_symm_contact.auth_asym_id_1 R _pdbx_validate_symm_contact.auth_comp_id_1 C _pdbx_validate_symm_contact.auth_seq_id_1 75 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 NZ _pdbx_validate_symm_contact.auth_asym_id_2 P _pdbx_validate_symm_contact.auth_comp_id_2 LYS _pdbx_validate_symm_contact.auth_seq_id_2 46 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_554 _pdbx_validate_symm_contact.dist 2.13 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 R G 10 ? ? C4 R G 10 ? ? N9 R G 10 ? ? 122.17 126.00 -3.83 0.60 N 2 1 "O4'" R A 66 ? ? "C1'" R A 66 ? ? N9 R A 66 ? ? 112.93 108.50 4.43 0.70 N 3 1 C5 R A 66 ? ? N7 R A 66 ? ? C8 R A 66 ? ? 100.58 103.90 -3.32 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS P 46 ? ? -169.44 -155.69 2 1 ARG P 47 ? ? -154.34 -2.90 3 1 ARG P 52 ? ? -35.97 136.14 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 VAL P 45 ? ? LYS P 46 ? ? 149.43 2 1 LYS P 46 ? ? ARG P 47 ? ? -127.88 # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 9.7237 _pdbx_refine_tls.origin_y -2.7309 _pdbx_refine_tls.origin_z 48.4783 _pdbx_refine_tls.T[1][1] 0.3317 _pdbx_refine_tls.T[2][2] 0.3677 _pdbx_refine_tls.T[3][3] 0.3527 _pdbx_refine_tls.T[1][2] 0.0207 _pdbx_refine_tls.T[1][3] 0.0014 _pdbx_refine_tls.T[2][3] -0.0319 _pdbx_refine_tls.L[1][1] -0.1369 _pdbx_refine_tls.L[2][2] 0.1439 _pdbx_refine_tls.L[3][3] 0.6480 _pdbx_refine_tls.L[1][2] 0.0232 _pdbx_refine_tls.L[1][3] -0.0101 _pdbx_refine_tls.L[2][3] -0.1499 _pdbx_refine_tls.S[1][1] 0.0363 _pdbx_refine_tls.S[1][2] -0.0135 _pdbx_refine_tls.S[1][3] 0.0096 _pdbx_refine_tls.S[2][1] 0.0475 _pdbx_refine_tls.S[2][2] 0.0639 _pdbx_refine_tls.S[2][3] -0.0841 _pdbx_refine_tls.S[3][1] -0.0414 _pdbx_refine_tls.S[3][2] 0.0708 _pdbx_refine_tls.S[3][3] -0.0850 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 4BW OAC O N N 1 4BW CBC C N N 2 4BW NAT N N N 3 4BW CBA C N N 4 4BW NAA N N N 5 4BW NAS N N N 6 4BW CBG C Y N 7 4BW CBE C Y N 8 4BW NAR N Y N 9 4BW CAL C Y N 10 4BW NBQ N Y N 11 4BW CBO C N R 12 4BW CBI C N R 13 4BW OAG O N N 14 4BW OAX O N N 15 4BW CBK C N R 16 4BW CAN C N N 17 4BW OAV O N N 18 4BW PBR P N N 19 4BW "O3'" O N N 20 4BW OAH O N N 21 4BW OAD O N N 22 4BW CBM C N S 23 4BW OAZ O N N 24 4BW PBS P N N 25 4BW OAI O N N 26 4BW OAE O N N 27 4BW "O5'" O N N 28 4BW "C5'" C N N 29 4BW "C4'" C N R 30 4BW "O4'" O N N 31 4BW "C3'" C N S 32 4BW "C2'" C N R 33 4BW "O2'" O N N 34 4BW "C1'" C N R 35 4BW N9 N Y N 36 4BW C8 C Y N 37 4BW N7 N Y N 38 4BW C5 C Y N 39 4BW C4 C Y N 40 4BW N3 N Y N 41 4BW C2 C Y N 42 4BW N1 N Y N 43 4BW C6 C Y N 44 4BW N6 N N N 45 4BW H1 H N N 46 4BW H2 H N N 47 4BW H3 H N N 48 4BW H4 H N N 49 4BW H5 H N N 50 4BW H6 H N N 51 4BW H7 H N N 52 4BW H8 H N N 53 4BW H9 H N N 54 4BW H10 H N N 55 4BW H11 H N N 56 4BW H12 H N N 57 4BW H13 H N N 58 4BW H14 H N N 59 4BW H15 H N N 60 4BW H16 H N N 61 4BW H17 H N N 62 4BW H18 H N N 63 4BW H19 H N N 64 4BW H20 H N N 65 4BW H21 H N N 66 4BW H22 H N N 67 4BW H23 H N N 68 4BW H24 H N N 69 A OP3 O N N 70 A P P N N 71 A OP1 O N N 72 A OP2 O N N 73 A "O5'" O N N 74 A "C5'" C N N 75 A "C4'" C N R 76 A "O4'" O N N 77 A "C3'" C N S 78 A "O3'" O N N 79 A "C2'" C N R 80 A "O2'" O N N 81 A "C1'" C N R 82 A N9 N Y N 83 A C8 C Y N 84 A N7 N Y N 85 A C5 C Y N 86 A C6 C Y N 87 A N6 N N N 88 A N1 N Y N 89 A C2 C Y N 90 A N3 N Y N 91 A C4 C Y N 92 A HOP3 H N N 93 A HOP2 H N N 94 A "H5'" H N N 95 A "H5''" H N N 96 A "H4'" H N N 97 A "H3'" H N N 98 A "HO3'" H N N 99 A "H2'" H N N 100 A "HO2'" H N N 101 A "H1'" H N N 102 A H8 H N N 103 A H61 H N N 104 A H62 H N N 105 A H2 H N N 106 ALA N N N N 107 ALA CA C N S 108 ALA C C N N 109 ALA O O N N 110 ALA CB C N N 111 ALA OXT O N N 112 ALA H H N N 113 ALA H2 H N N 114 ALA HA H N N 115 ALA HB1 H N N 116 ALA HB2 H N N 117 ALA HB3 H N N 118 ALA HXT H N N 119 ARG N N N N 120 ARG CA C N S 121 ARG C C N N 122 ARG O O N N 123 ARG CB C N N 124 ARG CG C N N 125 ARG CD C N N 126 ARG NE N N N 127 ARG CZ C N N 128 ARG NH1 N N N 129 ARG NH2 N N N 130 ARG OXT O N N 131 ARG H H N N 132 ARG H2 H N N 133 ARG HA H N N 134 ARG HB2 H N N 135 ARG HB3 H N N 136 ARG HG2 H N N 137 ARG HG3 H N N 138 ARG HD2 H N N 139 ARG HD3 H N N 140 ARG HE H N N 141 ARG HH11 H N N 142 ARG HH12 H N N 143 ARG HH21 H N N 144 ARG HH22 H N N 145 ARG HXT H N N 146 ASN N N N N 147 ASN CA C N S 148 ASN C C N N 149 ASN O O N N 150 ASN CB C N N 151 ASN CG C N N 152 ASN OD1 O N N 153 ASN ND2 N N N 154 ASN OXT O N N 155 ASN H H N N 156 ASN H2 H N N 157 ASN HA H N N 158 ASN HB2 H N N 159 ASN HB3 H N N 160 ASN HD21 H N N 161 ASN HD22 H N N 162 ASN HXT H N N 163 ASP N N N N 164 ASP CA C N S 165 ASP C C N N 166 ASP O O N N 167 ASP CB C N N 168 ASP CG C N N 169 ASP OD1 O N N 170 ASP OD2 O N N 171 ASP OXT O N N 172 ASP H H N N 173 ASP H2 H N N 174 ASP HA H N N 175 ASP HB2 H N N 176 ASP HB3 H N N 177 ASP HD2 H N N 178 ASP HXT H N N 179 C OP3 O N N 180 C P P N N 181 C OP1 O N N 182 C OP2 O N N 183 C "O5'" O N N 184 C "C5'" C N N 185 C "C4'" C N R 186 C "O4'" O N N 187 C "C3'" C N S 188 C "O3'" O N N 189 C "C2'" C N R 190 C "O2'" O N N 191 C "C1'" C N R 192 C N1 N N N 193 C C2 C N N 194 C O2 O N N 195 C N3 N N N 196 C C4 C N N 197 C N4 N N N 198 C C5 C N N 199 C C6 C N N 200 C HOP3 H N N 201 C HOP2 H N N 202 C "H5'" H N N 203 C "H5''" H N N 204 C "H4'" H N N 205 C "H3'" H N N 206 C "HO3'" H N N 207 C "H2'" H N N 208 C "HO2'" H N N 209 C "H1'" H N N 210 C H41 H N N 211 C H42 H N N 212 C H5 H N N 213 C H6 H N N 214 G OP3 O N N 215 G P P N N 216 G OP1 O N N 217 G OP2 O N N 218 G "O5'" O N N 219 G "C5'" C N N 220 G "C4'" C N R 221 G "O4'" O N N 222 G "C3'" C N S 223 G "O3'" O N N 224 G "C2'" C N R 225 G "O2'" O N N 226 G "C1'" C N R 227 G N9 N Y N 228 G C8 C Y N 229 G N7 N Y N 230 G C5 C Y N 231 G C6 C N N 232 G O6 O N N 233 G N1 N N N 234 G C2 C N N 235 G N2 N N N 236 G N3 N N N 237 G C4 C Y N 238 G HOP3 H N N 239 G HOP2 H N N 240 G "H5'" H N N 241 G "H5''" H N N 242 G "H4'" H N N 243 G "H3'" H N N 244 G "HO3'" H N N 245 G "H2'" H N N 246 G "HO2'" H N N 247 G "H1'" H N N 248 G H8 H N N 249 G H1 H N N 250 G H21 H N N 251 G H22 H N N 252 GLN N N N N 253 GLN CA C N S 254 GLN C C N N 255 GLN O O N N 256 GLN CB C N N 257 GLN CG C N N 258 GLN CD C N N 259 GLN OE1 O N N 260 GLN NE2 N N N 261 GLN OXT O N N 262 GLN H H N N 263 GLN H2 H N N 264 GLN HA H N N 265 GLN HB2 H N N 266 GLN HB3 H N N 267 GLN HG2 H N N 268 GLN HG3 H N N 269 GLN HE21 H N N 270 GLN HE22 H N N 271 GLN HXT H N N 272 GLU N N N N 273 GLU CA C N S 274 GLU C C N N 275 GLU O O N N 276 GLU CB C N N 277 GLU CG C N N 278 GLU CD C N N 279 GLU OE1 O N N 280 GLU OE2 O N N 281 GLU OXT O N N 282 GLU H H N N 283 GLU H2 H N N 284 GLU HA H N N 285 GLU HB2 H N N 286 GLU HB3 H N N 287 GLU HG2 H N N 288 GLU HG3 H N N 289 GLU HE2 H N N 290 GLU HXT H N N 291 GLY N N N N 292 GLY CA C N N 293 GLY C C N N 294 GLY O O N N 295 GLY OXT O N N 296 GLY H H N N 297 GLY H2 H N N 298 GLY HA2 H N N 299 GLY HA3 H N N 300 GLY HXT H N N 301 HIS N N N N 302 HIS CA C N S 303 HIS C C N N 304 HIS O O N N 305 HIS CB C N N 306 HIS CG C Y N 307 HIS ND1 N Y N 308 HIS CD2 C Y N 309 HIS CE1 C Y N 310 HIS NE2 N Y N 311 HIS OXT O N N 312 HIS H H N N 313 HIS H2 H N N 314 HIS HA H N N 315 HIS HB2 H N N 316 HIS HB3 H N N 317 HIS HD1 H N N 318 HIS HD2 H N N 319 HIS HE1 H N N 320 HIS HE2 H N N 321 HIS HXT H N N 322 HOH O O N N 323 HOH H1 H N N 324 HOH H2 H N N 325 ILE N N N N 326 ILE CA C N S 327 ILE C C N N 328 ILE O O N N 329 ILE CB C N S 330 ILE CG1 C N N 331 ILE CG2 C N N 332 ILE CD1 C N N 333 ILE OXT O N N 334 ILE H H N N 335 ILE H2 H N N 336 ILE HA H N N 337 ILE HB H N N 338 ILE HG12 H N N 339 ILE HG13 H N N 340 ILE HG21 H N N 341 ILE HG22 H N N 342 ILE HG23 H N N 343 ILE HD11 H N N 344 ILE HD12 H N N 345 ILE HD13 H N N 346 ILE HXT H N N 347 LEU N N N N 348 LEU CA C N S 349 LEU C C N N 350 LEU O O N N 351 LEU CB C N N 352 LEU CG C N N 353 LEU CD1 C N N 354 LEU CD2 C N N 355 LEU OXT O N N 356 LEU H H N N 357 LEU H2 H N N 358 LEU HA H N N 359 LEU HB2 H N N 360 LEU HB3 H N N 361 LEU HG H N N 362 LEU HD11 H N N 363 LEU HD12 H N N 364 LEU HD13 H N N 365 LEU HD21 H N N 366 LEU HD22 H N N 367 LEU HD23 H N N 368 LEU HXT H N N 369 LYS N N N N 370 LYS CA C N S 371 LYS C C N N 372 LYS O O N N 373 LYS CB C N N 374 LYS CG C N N 375 LYS CD C N N 376 LYS CE C N N 377 LYS NZ N N N 378 LYS OXT O N N 379 LYS H H N N 380 LYS H2 H N N 381 LYS HA H N N 382 LYS HB2 H N N 383 LYS HB3 H N N 384 LYS HG2 H N N 385 LYS HG3 H N N 386 LYS HD2 H N N 387 LYS HD3 H N N 388 LYS HE2 H N N 389 LYS HE3 H N N 390 LYS HZ1 H N N 391 LYS HZ2 H N N 392 LYS HZ3 H N N 393 LYS HXT H N N 394 MET N N N N 395 MET CA C N S 396 MET C C N N 397 MET O O N N 398 MET CB C N N 399 MET CG C N N 400 MET SD S N N 401 MET CE C N N 402 MET OXT O N N 403 MET H H N N 404 MET H2 H N N 405 MET HA H N N 406 MET HB2 H N N 407 MET HB3 H N N 408 MET HG2 H N N 409 MET HG3 H N N 410 MET HE1 H N N 411 MET HE2 H N N 412 MET HE3 H N N 413 MET HXT H N N 414 MG MG MG N N 415 PHE N N N N 416 PHE CA C N S 417 PHE C C N N 418 PHE O O N N 419 PHE CB C N N 420 PHE CG C Y N 421 PHE CD1 C Y N 422 PHE CD2 C Y N 423 PHE CE1 C Y N 424 PHE CE2 C Y N 425 PHE CZ C Y N 426 PHE OXT O N N 427 PHE H H N N 428 PHE H2 H N N 429 PHE HA H N N 430 PHE HB2 H N N 431 PHE HB3 H N N 432 PHE HD1 H N N 433 PHE HD2 H N N 434 PHE HE1 H N N 435 PHE HE2 H N N 436 PHE HZ H N N 437 PHE HXT H N N 438 PRO N N N N 439 PRO CA C N S 440 PRO C C N N 441 PRO O O N N 442 PRO CB C N N 443 PRO CG C N N 444 PRO CD C N N 445 PRO OXT O N N 446 PRO H H N N 447 PRO HA H N N 448 PRO HB2 H N N 449 PRO HB3 H N N 450 PRO HG2 H N N 451 PRO HG3 H N N 452 PRO HD2 H N N 453 PRO HD3 H N N 454 PRO HXT H N N 455 SER N N N N 456 SER CA C N S 457 SER C C N N 458 SER O O N N 459 SER CB C N N 460 SER OG O N N 461 SER OXT O N N 462 SER H H N N 463 SER H2 H N N 464 SER HA H N N 465 SER HB2 H N N 466 SER HB3 H N N 467 SER HG H N N 468 SER HXT H N N 469 THR N N N N 470 THR CA C N S 471 THR C C N N 472 THR O O N N 473 THR CB C N R 474 THR OG1 O N N 475 THR CG2 C N N 476 THR OXT O N N 477 THR H H N N 478 THR H2 H N N 479 THR HA H N N 480 THR HB H N N 481 THR HG1 H N N 482 THR HG21 H N N 483 THR HG22 H N N 484 THR HG23 H N N 485 THR HXT H N N 486 TYR N N N N 487 TYR CA C N S 488 TYR C C N N 489 TYR O O N N 490 TYR CB C N N 491 TYR CG C Y N 492 TYR CD1 C Y N 493 TYR CD2 C Y N 494 TYR CE1 C Y N 495 TYR CE2 C Y N 496 TYR CZ C Y N 497 TYR OH O N N 498 TYR OXT O N N 499 TYR H H N N 500 TYR H2 H N N 501 TYR HA H N N 502 TYR HB2 H N N 503 TYR HB3 H N N 504 TYR HD1 H N N 505 TYR HD2 H N N 506 TYR HE1 H N N 507 TYR HE2 H N N 508 TYR HH H N N 509 TYR HXT H N N 510 U OP3 O N N 511 U P P N N 512 U OP1 O N N 513 U OP2 O N N 514 U "O5'" O N N 515 U "C5'" C N N 516 U "C4'" C N R 517 U "O4'" O N N 518 U "C3'" C N S 519 U "O3'" O N N 520 U "C2'" C N R 521 U "O2'" O N N 522 U "C1'" C N R 523 U N1 N N N 524 U C2 C N N 525 U O2 O N N 526 U N3 N N N 527 U C4 C N N 528 U O4 O N N 529 U C5 C N N 530 U C6 C N N 531 U HOP3 H N N 532 U HOP2 H N N 533 U "H5'" H N N 534 U "H5''" H N N 535 U "H4'" H N N 536 U "H3'" H N N 537 U "HO3'" H N N 538 U "H2'" H N N 539 U "HO2'" H N N 540 U "H1'" H N N 541 U H3 H N N 542 U H5 H N N 543 U H6 H N N 544 VAL N N N N 545 VAL CA C N S 546 VAL C C N N 547 VAL O O N N 548 VAL CB C N N 549 VAL CG1 C N N 550 VAL CG2 C N N 551 VAL OXT O N N 552 VAL H H N N 553 VAL H2 H N N 554 VAL HA H N N 555 VAL HB H N N 556 VAL HG11 H N N 557 VAL HG12 H N N 558 VAL HG13 H N N 559 VAL HG21 H N N 560 VAL HG22 H N N 561 VAL HG23 H N N 562 VAL HXT H N N 563 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4BW NAA CBA sing N N 1 4BW CBA NAS doub N N 2 4BW CBA NAT sing N N 3 4BW NAS CBG sing N N 4 4BW NAT CBC sing N N 5 4BW OAG CBI sing N N 6 4BW CBG NBQ sing Y N 7 4BW CBG CBE doub Y N 8 4BW CBC CBE sing N N 9 4BW CBC OAC doub N N 10 4BW OAI PBS doub N N 11 4BW CBI CBO sing N N 12 4BW CBI CBM sing N N 13 4BW CBO NBQ sing N N 14 4BW CBO OAX sing N N 15 4BW NBQ CAL sing Y N 16 4BW CBE NAR sing Y N 17 4BW OAE PBS sing N N 18 4BW OAX CBK sing N N 19 4BW PBS OAZ sing N N 20 4BW PBS "O5'" sing N N 21 4BW OAZ CBM sing N N 22 4BW CBM CBK sing N N 23 4BW CAL NAR doub Y N 24 4BW CBK CAN sing N N 25 4BW N6 C6 sing N N 26 4BW N7 C8 doub Y N 27 4BW N7 C5 sing Y N 28 4BW "O5'" "C5'" sing N N 29 4BW C8 N9 sing Y N 30 4BW C6 C5 doub Y N 31 4BW C6 N1 sing Y N 32 4BW C5 C4 sing Y N 33 4BW CAN OAV sing N N 34 4BW "C5'" "C4'" sing N N 35 4BW OAV PBR sing N N 36 4BW N9 C4 sing Y N 37 4BW N9 "C1'" sing N N 38 4BW N1 C2 doub Y N 39 4BW C4 N3 doub Y N 40 4BW "O4'" "C4'" sing N N 41 4BW "O4'" "C1'" sing N N 42 4BW "C4'" "C3'" sing N N 43 4BW "C3'" "C2'" sing N N 44 4BW "C3'" "O3'" sing N N 45 4BW "C1'" "C2'" sing N N 46 4BW C2 N3 sing Y N 47 4BW PBR OAD doub N N 48 4BW PBR "O3'" sing N N 49 4BW PBR OAH sing N N 50 4BW "C2'" "O2'" sing N N 51 4BW NAT H1 sing N N 52 4BW NAA H2 sing N N 53 4BW NAA H3 sing N N 54 4BW CAL H4 sing N N 55 4BW CBO H5 sing N N 56 4BW CBI H6 sing N N 57 4BW OAG H7 sing N N 58 4BW CBK H8 sing N N 59 4BW CAN H9 sing N N 60 4BW CAN H10 sing N N 61 4BW OAH H11 sing N N 62 4BW CBM H12 sing N N 63 4BW OAE H13 sing N N 64 4BW "C5'" H14 sing N N 65 4BW "C5'" H15 sing N N 66 4BW "C4'" H16 sing N N 67 4BW "C3'" H17 sing N N 68 4BW "C2'" H18 sing N N 69 4BW "O2'" H19 sing N N 70 4BW "C1'" H20 sing N N 71 4BW C8 H21 sing N N 72 4BW C2 H22 sing N N 73 4BW N6 H23 sing N N 74 4BW N6 H24 sing N N 75 A OP3 P sing N N 76 A OP3 HOP3 sing N N 77 A P OP1 doub N N 78 A P OP2 sing N N 79 A P "O5'" sing N N 80 A OP2 HOP2 sing N N 81 A "O5'" "C5'" sing N N 82 A "C5'" "C4'" sing N N 83 A "C5'" "H5'" sing N N 84 A "C5'" "H5''" sing N N 85 A "C4'" "O4'" sing N N 86 A "C4'" "C3'" sing N N 87 A "C4'" "H4'" sing N N 88 A "O4'" "C1'" sing N N 89 A "C3'" "O3'" sing N N 90 A "C3'" "C2'" sing N N 91 A "C3'" "H3'" sing N N 92 A "O3'" "HO3'" sing N N 93 A "C2'" "O2'" sing N N 94 A "C2'" "C1'" sing N N 95 A "C2'" "H2'" sing N N 96 A "O2'" "HO2'" sing N N 97 A "C1'" N9 sing N N 98 A "C1'" "H1'" sing N N 99 A N9 C8 sing Y N 100 A N9 C4 sing Y N 101 A C8 N7 doub Y N 102 A C8 H8 sing N N 103 A N7 C5 sing Y N 104 A C5 C6 sing Y N 105 A C5 C4 doub Y N 106 A C6 N6 sing N N 107 A C6 N1 doub Y N 108 A N6 H61 sing N N 109 A N6 H62 sing N N 110 A N1 C2 sing Y N 111 A C2 N3 doub Y N 112 A C2 H2 sing N N 113 A N3 C4 sing Y N 114 ALA N CA sing N N 115 ALA N H sing N N 116 ALA N H2 sing N N 117 ALA CA C sing N N 118 ALA CA CB sing N N 119 ALA CA HA sing N N 120 ALA C O doub N N 121 ALA C OXT sing N N 122 ALA CB HB1 sing N N 123 ALA CB HB2 sing N N 124 ALA CB HB3 sing N N 125 ALA OXT HXT sing N N 126 ARG N CA sing N N 127 ARG N H sing N N 128 ARG N H2 sing N N 129 ARG CA C sing N N 130 ARG CA CB sing N N 131 ARG CA HA sing N N 132 ARG C O doub N N 133 ARG C OXT sing N N 134 ARG CB CG sing N N 135 ARG CB HB2 sing N N 136 ARG CB HB3 sing N N 137 ARG CG CD sing N N 138 ARG CG HG2 sing N N 139 ARG CG HG3 sing N N 140 ARG CD NE sing N N 141 ARG CD HD2 sing N N 142 ARG CD HD3 sing N N 143 ARG NE CZ sing N N 144 ARG NE HE sing N N 145 ARG CZ NH1 sing N N 146 ARG CZ NH2 doub N N 147 ARG NH1 HH11 sing N N 148 ARG NH1 HH12 sing N N 149 ARG NH2 HH21 sing N N 150 ARG NH2 HH22 sing N N 151 ARG OXT HXT sing N N 152 ASN N CA sing N N 153 ASN N H sing N N 154 ASN N H2 sing N N 155 ASN CA C sing N N 156 ASN CA CB sing N N 157 ASN CA HA sing N N 158 ASN C O doub N N 159 ASN C OXT sing N N 160 ASN CB CG sing N N 161 ASN CB HB2 sing N N 162 ASN CB HB3 sing N N 163 ASN CG OD1 doub N N 164 ASN CG ND2 sing N N 165 ASN ND2 HD21 sing N N 166 ASN ND2 HD22 sing N N 167 ASN OXT HXT sing N N 168 ASP N CA sing N N 169 ASP N H sing N N 170 ASP N H2 sing N N 171 ASP CA C sing N N 172 ASP CA CB sing N N 173 ASP CA HA sing N N 174 ASP C O doub N N 175 ASP C OXT sing N N 176 ASP CB CG sing N N 177 ASP CB HB2 sing N N 178 ASP CB HB3 sing N N 179 ASP CG OD1 doub N N 180 ASP CG OD2 sing N N 181 ASP OD2 HD2 sing N N 182 ASP OXT HXT sing N N 183 C OP3 P sing N N 184 C OP3 HOP3 sing N N 185 C P OP1 doub N N 186 C P OP2 sing N N 187 C P "O5'" sing N N 188 C OP2 HOP2 sing N N 189 C "O5'" "C5'" sing N N 190 C "C5'" "C4'" sing N N 191 C "C5'" "H5'" sing N N 192 C "C5'" "H5''" sing N N 193 C "C4'" "O4'" sing N N 194 C "C4'" "C3'" sing N N 195 C "C4'" "H4'" sing N N 196 C "O4'" "C1'" sing N N 197 C "C3'" "O3'" sing N N 198 C "C3'" "C2'" sing N N 199 C "C3'" "H3'" sing N N 200 C "O3'" "HO3'" sing N N 201 C "C2'" "O2'" sing N N 202 C "C2'" "C1'" sing N N 203 C "C2'" "H2'" sing N N 204 C "O2'" "HO2'" sing N N 205 C "C1'" N1 sing N N 206 C "C1'" "H1'" sing N N 207 C N1 C2 sing N N 208 C N1 C6 sing N N 209 C C2 O2 doub N N 210 C C2 N3 sing N N 211 C N3 C4 doub N N 212 C C4 N4 sing N N 213 C C4 C5 sing N N 214 C N4 H41 sing N N 215 C N4 H42 sing N N 216 C C5 C6 doub N N 217 C C5 H5 sing N N 218 C C6 H6 sing N N 219 G OP3 P sing N N 220 G OP3 HOP3 sing N N 221 G P OP1 doub N N 222 G P OP2 sing N N 223 G P "O5'" sing N N 224 G OP2 HOP2 sing N N 225 G "O5'" "C5'" sing N N 226 G "C5'" "C4'" sing N N 227 G "C5'" "H5'" sing N N 228 G "C5'" "H5''" sing N N 229 G "C4'" "O4'" sing N N 230 G "C4'" "C3'" sing N N 231 G "C4'" "H4'" sing N N 232 G "O4'" "C1'" sing N N 233 G "C3'" "O3'" sing N N 234 G "C3'" "C2'" sing N N 235 G "C3'" "H3'" sing N N 236 G "O3'" "HO3'" sing N N 237 G "C2'" "O2'" sing N N 238 G "C2'" "C1'" sing N N 239 G "C2'" "H2'" sing N N 240 G "O2'" "HO2'" sing N N 241 G "C1'" N9 sing N N 242 G "C1'" "H1'" sing N N 243 G N9 C8 sing Y N 244 G N9 C4 sing Y N 245 G C8 N7 doub Y N 246 G C8 H8 sing N N 247 G N7 C5 sing Y N 248 G C5 C6 sing N N 249 G C5 C4 doub Y N 250 G C6 O6 doub N N 251 G C6 N1 sing N N 252 G N1 C2 sing N N 253 G N1 H1 sing N N 254 G C2 N2 sing N N 255 G C2 N3 doub N N 256 G N2 H21 sing N N 257 G N2 H22 sing N N 258 G N3 C4 sing N N 259 GLN N CA sing N N 260 GLN N H sing N N 261 GLN N H2 sing N N 262 GLN CA C sing N N 263 GLN CA CB sing N N 264 GLN CA HA sing N N 265 GLN C O doub N N 266 GLN C OXT sing N N 267 GLN CB CG sing N N 268 GLN CB HB2 sing N N 269 GLN CB HB3 sing N N 270 GLN CG CD sing N N 271 GLN CG HG2 sing N N 272 GLN CG HG3 sing N N 273 GLN CD OE1 doub N N 274 GLN CD NE2 sing N N 275 GLN NE2 HE21 sing N N 276 GLN NE2 HE22 sing N N 277 GLN OXT HXT sing N N 278 GLU N CA sing N N 279 GLU N H sing N N 280 GLU N H2 sing N N 281 GLU CA C sing N N 282 GLU CA CB sing N N 283 GLU CA HA sing N N 284 GLU C O doub N N 285 GLU C OXT sing N N 286 GLU CB CG sing N N 287 GLU CB HB2 sing N N 288 GLU CB HB3 sing N N 289 GLU CG CD sing N N 290 GLU CG HG2 sing N N 291 GLU CG HG3 sing N N 292 GLU CD OE1 doub N N 293 GLU CD OE2 sing N N 294 GLU OE2 HE2 sing N N 295 GLU OXT HXT sing N N 296 GLY N CA sing N N 297 GLY N H sing N N 298 GLY N H2 sing N N 299 GLY CA C sing N N 300 GLY CA HA2 sing N N 301 GLY CA HA3 sing N N 302 GLY C O doub N N 303 GLY C OXT sing N N 304 GLY OXT HXT sing N N 305 HIS N CA sing N N 306 HIS N H sing N N 307 HIS N H2 sing N N 308 HIS CA C sing N N 309 HIS CA CB sing N N 310 HIS CA HA sing N N 311 HIS C O doub N N 312 HIS C OXT sing N N 313 HIS CB CG sing N N 314 HIS CB HB2 sing N N 315 HIS CB HB3 sing N N 316 HIS CG ND1 sing Y N 317 HIS CG CD2 doub Y N 318 HIS ND1 CE1 doub Y N 319 HIS ND1 HD1 sing N N 320 HIS CD2 NE2 sing Y N 321 HIS CD2 HD2 sing N N 322 HIS CE1 NE2 sing Y N 323 HIS CE1 HE1 sing N N 324 HIS NE2 HE2 sing N N 325 HIS OXT HXT sing N N 326 HOH O H1 sing N N 327 HOH O H2 sing N N 328 ILE N CA sing N N 329 ILE N H sing N N 330 ILE N H2 sing N N 331 ILE CA C sing N N 332 ILE CA CB sing N N 333 ILE CA HA sing N N 334 ILE C O doub N N 335 ILE C OXT sing N N 336 ILE CB CG1 sing N N 337 ILE CB CG2 sing N N 338 ILE CB HB sing N N 339 ILE CG1 CD1 sing N N 340 ILE CG1 HG12 sing N N 341 ILE CG1 HG13 sing N N 342 ILE CG2 HG21 sing N N 343 ILE CG2 HG22 sing N N 344 ILE CG2 HG23 sing N N 345 ILE CD1 HD11 sing N N 346 ILE CD1 HD12 sing N N 347 ILE CD1 HD13 sing N N 348 ILE OXT HXT sing N N 349 LEU N CA sing N N 350 LEU N H sing N N 351 LEU N H2 sing N N 352 LEU CA C sing N N 353 LEU CA CB sing N N 354 LEU CA HA sing N N 355 LEU C O doub N N 356 LEU C OXT sing N N 357 LEU CB CG sing N N 358 LEU CB HB2 sing N N 359 LEU CB HB3 sing N N 360 LEU CG CD1 sing N N 361 LEU CG CD2 sing N N 362 LEU CG HG sing N N 363 LEU CD1 HD11 sing N N 364 LEU CD1 HD12 sing N N 365 LEU CD1 HD13 sing N N 366 LEU CD2 HD21 sing N N 367 LEU CD2 HD22 sing N N 368 LEU CD2 HD23 sing N N 369 LEU OXT HXT sing N N 370 LYS N CA sing N N 371 LYS N H sing N N 372 LYS N H2 sing N N 373 LYS CA C sing N N 374 LYS CA CB sing N N 375 LYS CA HA sing N N 376 LYS C O doub N N 377 LYS C OXT sing N N 378 LYS CB CG sing N N 379 LYS CB HB2 sing N N 380 LYS CB HB3 sing N N 381 LYS CG CD sing N N 382 LYS CG HG2 sing N N 383 LYS CG HG3 sing N N 384 LYS CD CE sing N N 385 LYS CD HD2 sing N N 386 LYS CD HD3 sing N N 387 LYS CE NZ sing N N 388 LYS CE HE2 sing N N 389 LYS CE HE3 sing N N 390 LYS NZ HZ1 sing N N 391 LYS NZ HZ2 sing N N 392 LYS NZ HZ3 sing N N 393 LYS OXT HXT sing N N 394 MET N CA sing N N 395 MET N H sing N N 396 MET N H2 sing N N 397 MET CA C sing N N 398 MET CA CB sing N N 399 MET CA HA sing N N 400 MET C O doub N N 401 MET C OXT sing N N 402 MET CB CG sing N N 403 MET CB HB2 sing N N 404 MET CB HB3 sing N N 405 MET CG SD sing N N 406 MET CG HG2 sing N N 407 MET CG HG3 sing N N 408 MET SD CE sing N N 409 MET CE HE1 sing N N 410 MET CE HE2 sing N N 411 MET CE HE3 sing N N 412 MET OXT HXT sing N N 413 PHE N CA sing N N 414 PHE N H sing N N 415 PHE N H2 sing N N 416 PHE CA C sing N N 417 PHE CA CB sing N N 418 PHE CA HA sing N N 419 PHE C O doub N N 420 PHE C OXT sing N N 421 PHE CB CG sing N N 422 PHE CB HB2 sing N N 423 PHE CB HB3 sing N N 424 PHE CG CD1 doub Y N 425 PHE CG CD2 sing Y N 426 PHE CD1 CE1 sing Y N 427 PHE CD1 HD1 sing N N 428 PHE CD2 CE2 doub Y N 429 PHE CD2 HD2 sing N N 430 PHE CE1 CZ doub Y N 431 PHE CE1 HE1 sing N N 432 PHE CE2 CZ sing Y N 433 PHE CE2 HE2 sing N N 434 PHE CZ HZ sing N N 435 PHE OXT HXT sing N N 436 PRO N CA sing N N 437 PRO N CD sing N N 438 PRO N H sing N N 439 PRO CA C sing N N 440 PRO CA CB sing N N 441 PRO CA HA sing N N 442 PRO C O doub N N 443 PRO C OXT sing N N 444 PRO CB CG sing N N 445 PRO CB HB2 sing N N 446 PRO CB HB3 sing N N 447 PRO CG CD sing N N 448 PRO CG HG2 sing N N 449 PRO CG HG3 sing N N 450 PRO CD HD2 sing N N 451 PRO CD HD3 sing N N 452 PRO OXT HXT sing N N 453 SER N CA sing N N 454 SER N H sing N N 455 SER N H2 sing N N 456 SER CA C sing N N 457 SER CA CB sing N N 458 SER CA HA sing N N 459 SER C O doub N N 460 SER C OXT sing N N 461 SER CB OG sing N N 462 SER CB HB2 sing N N 463 SER CB HB3 sing N N 464 SER OG HG sing N N 465 SER OXT HXT sing N N 466 THR N CA sing N N 467 THR N H sing N N 468 THR N H2 sing N N 469 THR CA C sing N N 470 THR CA CB sing N N 471 THR CA HA sing N N 472 THR C O doub N N 473 THR C OXT sing N N 474 THR CB OG1 sing N N 475 THR CB CG2 sing N N 476 THR CB HB sing N N 477 THR OG1 HG1 sing N N 478 THR CG2 HG21 sing N N 479 THR CG2 HG22 sing N N 480 THR CG2 HG23 sing N N 481 THR OXT HXT sing N N 482 TYR N CA sing N N 483 TYR N H sing N N 484 TYR N H2 sing N N 485 TYR CA C sing N N 486 TYR CA CB sing N N 487 TYR CA HA sing N N 488 TYR C O doub N N 489 TYR C OXT sing N N 490 TYR CB CG sing N N 491 TYR CB HB2 sing N N 492 TYR CB HB3 sing N N 493 TYR CG CD1 doub Y N 494 TYR CG CD2 sing Y N 495 TYR CD1 CE1 sing Y N 496 TYR CD1 HD1 sing N N 497 TYR CD2 CE2 doub Y N 498 TYR CD2 HD2 sing N N 499 TYR CE1 CZ doub Y N 500 TYR CE1 HE1 sing N N 501 TYR CE2 CZ sing Y N 502 TYR CE2 HE2 sing N N 503 TYR CZ OH sing N N 504 TYR OH HH sing N N 505 TYR OXT HXT sing N N 506 U OP3 P sing N N 507 U OP3 HOP3 sing N N 508 U P OP1 doub N N 509 U P OP2 sing N N 510 U P "O5'" sing N N 511 U OP2 HOP2 sing N N 512 U "O5'" "C5'" sing N N 513 U "C5'" "C4'" sing N N 514 U "C5'" "H5'" sing N N 515 U "C5'" "H5''" sing N N 516 U "C4'" "O4'" sing N N 517 U "C4'" "C3'" sing N N 518 U "C4'" "H4'" sing N N 519 U "O4'" "C1'" sing N N 520 U "C3'" "O3'" sing N N 521 U "C3'" "C2'" sing N N 522 U "C3'" "H3'" sing N N 523 U "O3'" "HO3'" sing N N 524 U "C2'" "O2'" sing N N 525 U "C2'" "C1'" sing N N 526 U "C2'" "H2'" sing N N 527 U "O2'" "HO2'" sing N N 528 U "C1'" N1 sing N N 529 U "C1'" "H1'" sing N N 530 U N1 C2 sing N N 531 U N1 C6 sing N N 532 U C2 O2 doub N N 533 U C2 N3 sing N N 534 U N3 C4 sing N N 535 U N3 H3 sing N N 536 U C4 O4 doub N N 537 U C4 C5 sing N N 538 U C5 C6 doub N N 539 U C5 H5 sing N N 540 U C6 H6 sing N N 541 VAL N CA sing N N 542 VAL N H sing N N 543 VAL N H2 sing N N 544 VAL CA C sing N N 545 VAL CA CB sing N N 546 VAL CA HA sing N N 547 VAL C O doub N N 548 VAL C OXT sing N N 549 VAL CB CG1 sing N N 550 VAL CB CG2 sing N N 551 VAL CB HB sing N N 552 VAL CG1 HG11 sing N N 553 VAL CG1 HG12 sing N N 554 VAL CG1 HG13 sing N N 555 VAL CG2 HG21 sing N N 556 VAL CG2 HG22 sing N N 557 VAL CG2 HG23 sing N N 558 VAL OXT HXT sing N N 559 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4YB1 'double helix' 4YB1 'a-form double helix' 4YB1 'hairpin loop' 4YB1 tetraloop 4YB1 'bulge loop' 4YB1 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 4 1_555 A G 91 1_555 1.460 0.529 0.377 -0.268 -8.776 12.028 1 R_C11:G98_R R 11 ? R 98 ? ? ? 1 A A 5 1_555 A U 90 1_555 0.442 -0.287 -1.490 -21.821 -4.806 9.925 2 R_A12:U97_R R 12 ? R 97 ? 20 1 1 A C 6 1_555 A G 88 1_555 -0.185 -0.014 0.877 -24.891 -14.383 3.194 3 R_C13:G95_R R 13 ? R 95 ? 19 1 1 A G 7 1_555 A C 87 1_555 -0.134 -0.019 0.181 12.740 -6.639 -1.390 4 R_G14:C94_R R 14 ? R 94 ? 19 1 1 A G 14 1_555 A C 39 1_555 -0.176 -0.047 -0.374 3.471 1.491 0.034 5 R_G21:C46_R R 21 ? R 46 ? 19 1 1 A C 15 1_555 A G 38 1_555 0.424 -0.093 -0.192 9.009 9.306 0.541 6 R_C22:G45_R R 22 ? R 45 ? 19 1 1 A G 77 1_555 A C 37 1_555 0.358 -0.146 1.086 7.699 -0.629 -0.873 7 R_G84:C44_R R 84 ? R 44 ? 19 1 1 A A 18 1_555 A G 35 1_555 -6.900 -3.834 0.086 3.205 -5.658 1.998 8 R_A25:G42_R R 25 ? R 42 ? 11 9 1 A C 19 1_555 A G 34 1_555 -0.284 -0.235 -0.325 5.597 -7.211 -0.175 9 R_C26:G41_R R 26 ? R 41 ? 19 1 1 A C 20 1_555 A G 33 1_555 -0.487 0.043 0.336 2.350 -8.268 1.692 10 R_C27:G40_R R 27 ? R 40 ? 19 1 1 A A 21 1_555 A U 32 1_555 -0.131 -0.121 0.055 2.493 -15.390 2.582 11 R_A28:U39_R R 28 ? R 39 ? 20 1 1 A U 22 1_555 A G 31 1_555 2.503 -0.663 -0.010 4.376 -15.187 2.205 12 R_U29:G38_R R 29 ? R 38 ? 28 1 1 A U 23 1_555 A A 30 1_555 0.230 -0.361 -0.293 -1.901 -7.568 3.933 13 R_U30:A37_R R 30 ? R 37 ? 20 1 1 A C 24 1_555 A G 29 1_555 -0.137 0.028 0.159 -0.479 2.034 2.445 14 R_C31:G36_R R 31 ? R 36 ? 19 1 1 A G 25 1_555 A A 28 1_555 7.594 -5.035 0.736 13.362 -2.627 -18.397 15 R_G32:A35_R R 32 ? R 35 ? ? ? 1 A A 41 1_555 A U 84 1_555 -4.312 -2.530 -0.726 8.783 -1.685 -85.619 16 R_A48:U91_R R 48 ? R 91 ? 24 4 1 A G 43 1_555 A U 83 1_555 -2.480 -0.607 -0.126 4.694 -6.635 -3.098 17 R_G50:U90_R R 50 ? R 90 ? 28 1 1 A C 44 1_555 A G 82 1_555 0.257 -0.102 -0.435 6.017 -12.243 7.000 18 R_C51:G89_R R 51 ? R 89 ? 19 1 1 A C 45 1_555 A G 81 1_555 0.256 -0.144 0.201 -3.249 -7.039 -3.319 19 R_C52:G88_R R 52 ? R 88 ? 19 1 1 A C 47 1_555 A G 80 1_555 -0.088 -0.120 -0.715 10.798 -7.331 6.853 20 R_C54:G87_R R 54 ? R 87 ? 19 1 1 A C 48 1_555 A G 79 1_555 0.834 -0.442 0.366 1.931 -3.881 -3.772 21 R_C55:G86_R R 55 ? R 86 ? 19 1 1 A G 49 1_555 A C 78 1_555 -0.201 0.033 0.192 8.177 2.910 3.060 22 R_G56:C85_R R 56 ? R 85 ? 19 1 1 A G 50 1_555 A U 75 1_555 -2.039 -0.330 0.158 8.077 1.390 -1.799 23 R_G57:U82_R R 57 ? R 82 ? 28 1 1 A C 51 1_555 A G 74 1_555 0.057 -0.196 -0.135 17.292 -18.473 -0.973 24 R_C58:G81_R R 58 ? R 81 ? 19 1 1 A C 52 1_555 A G 73 1_555 -0.200 -0.195 -0.697 7.036 -12.196 1.191 25 R_C59:G80_R R 59 ? R 80 ? 19 1 1 A U 53 1_555 A A 72 1_555 0.107 -0.175 -0.092 1.788 -0.296 6.587 26 R_U60:A79_R R 60 ? R 79 ? 20 1 1 A A 56 1_555 A U 71 1_555 -5.474 -0.163 1.641 35.111 -8.465 11.359 27 R_A63:U78_R R 63 ? R 78 ? ? ? 1 A C 57 1_555 A G 70 1_555 0.238 -0.177 0.018 13.462 -26.508 1.669 28 R_C64:G77_R R 64 ? R 77 ? 19 1 1 A C 58 1_555 A G 69 1_555 0.607 -0.197 0.404 -0.991 -15.281 0.508 29 R_C65:G76_R R 65 ? R 76 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 4 1_555 A G 91 1_555 A A 5 1_555 A U 90 1_555 1.368 -1.042 3.889 15.214 7.348 30.724 -3.128 0.610 3.797 12.732 -26.363 34.965 1 RR_C11A12:U97G98_RR R 11 ? R 98 ? R 12 ? R 97 ? 1 A A 5 1_555 A U 90 1_555 A C 6 1_555 A G 88 1_555 1.922 -0.939 2.903 -9.164 20.684 51.181 -1.964 -2.483 2.066 22.718 10.065 55.648 2 RR_A12C13:G95U97_RR R 12 ? R 97 ? R 13 ? R 95 ? 1 A C 6 1_555 A G 88 1_555 A G 7 1_555 A C 87 1_555 -1.088 -0.176 2.493 -1.319 18.737 31.444 -2.251 1.599 2.107 31.322 2.205 36.505 3 RR_C13G14:C94G95_RR R 13 ? R 95 ? R 14 ? R 94 ? 1 A G 14 1_555 A C 39 1_555 A C 15 1_555 A G 38 1_555 0.200 -2.097 3.517 -5.137 -2.112 31.294 -3.408 -1.393 3.570 -3.878 9.429 31.771 4 RR_G21C22:G45C46_RR R 21 ? R 46 ? R 22 ? R 45 ? 1 A C 15 1_555 A G 38 1_555 A G 77 1_555 A C 37 1_555 -5.062 0.171 3.308 -16.389 -7.520 57.076 0.631 4.091 4.432 -7.662 16.699 59.627 5 RR_C22G84:C44G45_RR R 22 ? R 45 ? R 84 ? R 44 ? 1 A A 18 1_555 A G 35 1_555 A C 19 1_555 A G 34 1_555 -0.602 -0.791 3.441 -5.426 9.037 62.293 -1.176 0.323 3.346 8.670 5.205 63.090 6 RR_A25C26:G41G42_RR R 25 ? R 42 ? R 26 ? R 41 ? 1 A C 19 1_555 A G 34 1_555 A C 20 1_555 A G 33 1_555 -0.162 -1.892 3.311 -6.078 9.911 27.309 -5.625 -0.865 2.468 19.886 12.196 29.638 7 RR_C26C27:G40G41_RR R 26 ? R 41 ? R 27 ? R 40 ? 1 A C 20 1_555 A G 33 1_555 A A 21 1_555 A U 32 1_555 -0.259 -1.688 3.030 1.673 10.420 32.879 -4.220 0.658 2.384 17.846 -2.866 34.486 8 RR_C27A28:U39G40_RR R 27 ? R 40 ? R 28 ? R 39 ? 1 A A 21 1_555 A U 32 1_555 A U 22 1_555 A G 31 1_555 0.292 -1.194 3.247 1.892 6.979 40.906 -2.401 -0.218 3.022 9.892 -2.681 41.513 9 RR_A28U29:G38U39_RR R 28 ? R 39 ? R 29 ? R 38 ? 1 A U 22 1_555 A G 31 1_555 A U 23 1_555 A A 30 1_555 0.022 -2.005 3.142 5.365 10.171 23.780 -6.679 1.157 2.080 23.037 -12.152 26.378 10 RR_U29U30:A37G38_RR R 29 ? R 38 ? R 30 ? R 37 ? 1 A U 23 1_555 A A 30 1_555 A C 24 1_555 A G 29 1_555 0.128 -1.822 3.279 -3.970 4.556 30.096 -4.304 -0.992 2.937 8.665 7.550 30.683 11 RR_U30C31:G36A37_RR R 30 ? R 37 ? R 31 ? R 36 ? 1 A C 24 1_555 A G 29 1_555 A G 25 1_555 A A 28 1_555 -2.262 -1.146 2.866 0.865 6.586 54.874 -1.567 2.483 2.689 7.118 -0.934 55.244 12 RR_C31G32:A35G36_RR R 31 ? R 36 ? R 32 ? R 35 ? 1 A A 41 1_555 A U 84 1_555 A G 43 1_555 A U 83 1_555 3.315 -2.041 3.279 -12.894 5.453 64.434 -2.078 -3.521 2.489 5.052 11.945 65.777 13 RR_A48G50:U90U91_RR R 48 ? R 91 ? R 50 ? R 90 ? 1 A G 43 1_555 A U 83 1_555 A C 44 1_555 A G 82 1_555 0.157 -1.321 3.141 0.228 6.467 44.647 -2.264 -0.186 2.933 8.460 -0.299 45.090 14 RR_G50C51:G89U90_RR R 50 ? R 90 ? R 51 ? R 89 ? 1 A C 44 1_555 A G 82 1_555 A C 45 1_555 A G 81 1_555 -0.424 -1.861 3.608 -1.663 5.985 31.264 -4.541 0.454 3.223 10.970 3.049 31.860 15 RR_C51C52:G88G89_RR R 51 ? R 89 ? R 52 ? R 88 ? 1 A C 45 1_555 A G 81 1_555 A C 47 1_555 A G 80 1_555 -2.543 -1.132 3.032 11.282 7.949 50.536 -1.719 3.503 2.265 9.118 -12.940 52.267 16 RR_C52C54:G87G88_RR R 52 ? R 88 ? R 54 ? R 87 ? 1 A C 47 1_555 A G 80 1_555 A C 48 1_555 A G 79 1_555 -0.883 -1.783 3.592 -8.535 6.562 41.121 -3.187 0.278 3.390 9.154 11.906 42.448 17 RR_C54C55:G86G87_RR R 54 ? R 87 ? R 55 ? R 86 ? 1 A C 48 1_555 A G 79 1_555 A G 49 1_555 A C 78 1_555 -0.112 -2.366 2.786 0.418 3.927 21.957 -7.276 0.413 2.329 10.203 -1.086 22.305 18 RR_C55G56:C85G86_RR R 55 ? R 86 ? R 56 ? R 85 ? 1 A G 49 1_555 A C 78 1_555 A G 50 1_555 A U 75 1_555 2.089 -1.771 2.840 1.189 7.557 39.579 -3.281 -2.921 2.532 11.034 -1.735 40.283 19 RR_G56G57:U82C85_RR R 56 ? R 85 ? R 57 ? R 82 ? 1 A G 50 1_555 A U 75 1_555 A C 51 1_555 A G 74 1_555 0.254 -0.989 2.921 -0.168 5.525 43.080 -1.805 -0.358 2.778 7.487 0.228 43.417 20 RR_G57C58:G81U82_RR R 57 ? R 82 ? R 58 ? R 81 ? 1 A C 51 1_555 A G 74 1_555 A C 52 1_555 A G 73 1_555 -0.485 -2.248 3.562 0.965 7.193 27.627 -6.198 1.202 2.878 14.743 -1.977 28.546 21 RR_C58C59:G80G81_RR R 58 ? R 81 ? R 59 ? R 80 ? 1 A C 52 1_555 A G 73 1_555 A U 53 1_555 A A 72 1_555 0.244 -1.784 3.649 -5.942 7.137 30.312 -4.650 -1.597 3.059 13.263 11.043 31.670 22 RR_C59U60:A79G80_RR R 59 ? R 80 ? R 60 ? R 79 ? 1 A U 53 1_555 A A 72 1_555 A A 56 1_555 A U 71 1_555 -3.829 -2.054 4.466 17.336 4.310 36.342 -3.503 7.667 2.236 6.454 -25.956 40.362 23 RR_U60A63:U78A79_RR R 60 ? R 79 ? R 63 ? R 78 ? 1 A A 56 1_555 A U 71 1_555 A C 57 1_555 A G 70 1_555 -0.891 -0.998 3.700 3.874 7.620 57.544 -1.473 1.143 3.493 7.867 -4.000 58.122 24 RR_A63C64:G77U78_RR R 63 ? R 78 ? R 64 ? R 77 ? 1 A C 57 1_555 A G 70 1_555 A C 58 1_555 A G 69 1_555 -0.358 -1.704 3.560 -3.370 10.078 33.431 -4.379 0.077 2.959 16.993 5.683 35.033 25 RR_C64C65:G76G77_RR R 64 ? R 77 ? R 65 ? R 76 ? # _atom_sites.entry_id 4YB1 _atom_sites.fract_transf_matrix[1][1] 0.019328 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000150 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021351 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012378 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_