HEADER ISOMERASE 20-FEB-15 4YCJ TITLE STRUCTURE OF ACETOBACTER ACETI PURE Y154F COMPND MOL_ID: 1; COMPND 2 MOLECULE: N5-CARBOXYAMINOIMIDAZOLE RIBONUCLEOTIDE MUTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: N5-CAIR MUTASE,5-(CARBOXYAMINO)IMIDAZOLE RIBONUCLEOTIDE COMPND 5 MUTASE; COMPND 6 EC: 5.4.99.18; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACETOBACTER ACETI 1023; SOURCE 3 ORGANISM_TAXID: 1457393; SOURCE 4 GENE: PURE, AZ09_02690; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS ACIDOPHILE, PURE, PURINE BIOSYNTHESIS, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.J.KAPPOCK,K.L.SULLIVAN REVDAT 2 27-SEP-23 4YCJ 1 REMARK REVDAT 1 24-FEB-16 4YCJ 0 JRNL AUTH K.L.SULLIVAN,S.TRANCHIMAND,T.J.KAPPOCK JRNL TITL STRUCTURE OF A SINGLE TRYPTOPHAN MUTANT OF ACETOBACTER ACETI JRNL TITL 2 PURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 36064 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.190 REMARK 3 FREE R VALUE TEST SET COUNT : 1510 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.6034 - 4.1016 0.99 3334 154 0.1530 0.1459 REMARK 3 2 4.1016 - 3.2566 1.00 3180 160 0.1568 0.1738 REMARK 3 3 3.2566 - 2.8452 1.00 3123 169 0.1734 0.1860 REMARK 3 4 2.8452 - 2.5852 1.00 3108 168 0.1887 0.2158 REMARK 3 5 2.5852 - 2.3999 1.00 3119 155 0.1874 0.1840 REMARK 3 6 2.3999 - 2.2585 1.00 3100 154 0.1900 0.2439 REMARK 3 7 2.2585 - 2.1454 1.00 3059 182 0.1885 0.2161 REMARK 3 8 2.1454 - 2.0520 1.00 3082 158 0.2052 0.2361 REMARK 3 9 2.0520 - 1.9730 1.00 3062 179 0.2077 0.2235 REMARK 3 10 1.9730 - 1.9049 1.00 3189 29 0.2165 0.3157 REMARK 3 11 1.9049 - 1.8454 0.98 3198 2 0.2198 0.4356 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2489 REMARK 3 ANGLE : 1.171 3424 REMARK 3 CHIRALITY : 0.051 415 REMARK 3 PLANARITY : 0.006 444 REMARK 3 DIHEDRAL : 11.749 926 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 105.7040 69.3959 35.6291 REMARK 3 T TENSOR REMARK 3 T11: 0.1882 T22: 0.1729 REMARK 3 T33: 0.1940 T12: -0.0110 REMARK 3 T13: 0.0071 T23: 0.0594 REMARK 3 L TENSOR REMARK 3 L11: 3.5216 L22: 3.2202 REMARK 3 L33: 3.1649 L12: -0.4077 REMARK 3 L13: 0.7933 L23: 2.9859 REMARK 3 S TENSOR REMARK 3 S11: 0.1596 S12: -0.2756 S13: -0.3854 REMARK 3 S21: 0.5551 S22: -0.1117 S23: -0.0086 REMARK 3 S31: 0.1829 S32: -0.1422 S33: 0.0208 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.8803 76.9671 41.0336 REMARK 3 T TENSOR REMARK 3 T11: 0.1974 T22: 0.2222 REMARK 3 T33: 0.1326 T12: 0.0045 REMARK 3 T13: 0.0128 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 5.6213 L22: 5.3543 REMARK 3 L33: 1.5012 L12: 3.6533 REMARK 3 L13: -0.1202 L23: -0.2266 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: -0.5087 S13: 0.0110 REMARK 3 S21: 0.1836 S22: -0.0879 S23: 0.0759 REMARK 3 S31: -0.0747 S32: -0.0690 S33: 0.0718 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 107.8885 72.0309 36.1655 REMARK 3 T TENSOR REMARK 3 T11: 0.1764 T22: 0.1627 REMARK 3 T33: 0.1527 T12: 0.0098 REMARK 3 T13: 0.0130 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 4.7659 L22: 1.2729 REMARK 3 L33: 0.9908 L12: 1.6275 REMARK 3 L13: -0.9369 L23: -0.6240 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: -0.4041 S13: -0.1828 REMARK 3 S21: 0.1431 S22: -0.0537 S23: 0.0407 REMARK 3 S31: 0.0047 S32: 0.0666 S33: 0.0549 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 116.3398 69.0115 28.2783 REMARK 3 T TENSOR REMARK 3 T11: 0.1717 T22: 0.1819 REMARK 3 T33: 0.2326 T12: 0.0340 REMARK 3 T13: 0.0064 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 3.0871 L22: 3.6056 REMARK 3 L33: 0.8397 L12: 2.1502 REMARK 3 L13: 0.7879 L23: 0.6150 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: 0.0923 S13: -0.4133 REMARK 3 S21: 0.1739 S22: -0.0198 S23: -0.2243 REMARK 3 S31: 0.0258 S32: 0.1125 S33: -0.0152 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 107.2956 72.7576 27.0841 REMARK 3 T TENSOR REMARK 3 T11: 0.1298 T22: 0.1204 REMARK 3 T33: 0.1460 T12: -0.0007 REMARK 3 T13: 0.0064 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 2.0410 L22: 1.4031 REMARK 3 L33: 1.6022 L12: 0.0151 REMARK 3 L13: -0.2372 L23: -0.8066 REMARK 3 S TENSOR REMARK 3 S11: -0.0430 S12: 0.0122 S13: -0.2222 REMARK 3 S21: -0.0574 S22: -0.0243 S23: -0.0766 REMARK 3 S31: 0.0969 S32: 0.0008 S33: 0.0732 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 104.3331 93.9570 34.5315 REMARK 3 T TENSOR REMARK 3 T11: 0.3201 T22: 0.2970 REMARK 3 T33: 0.2521 T12: -0.0618 REMARK 3 T13: 0.0314 T23: -0.0653 REMARK 3 L TENSOR REMARK 3 L11: 1.6312 L22: 2.0634 REMARK 3 L33: 3.5438 L12: 0.5930 REMARK 3 L13: 0.4509 L23: -2.3103 REMARK 3 S TENSOR REMARK 3 S11: 0.2193 S12: -0.8737 S13: 0.5415 REMARK 3 S21: 0.9491 S22: -0.2318 S23: 0.2548 REMARK 3 S31: -0.4832 S32: -0.0171 S33: 0.2798 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 98.8140 78.4109 26.5318 REMARK 3 T TENSOR REMARK 3 T11: 0.1416 T22: 0.1451 REMARK 3 T33: 0.1344 T12: -0.0027 REMARK 3 T13: 0.0119 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.3539 L22: 1.5573 REMARK 3 L33: 0.7434 L12: 0.6287 REMARK 3 L13: -0.0106 L23: 0.1618 REMARK 3 S TENSOR REMARK 3 S11: -0.0273 S12: -0.0055 S13: -0.0301 REMARK 3 S21: 0.0523 S22: -0.0039 S23: -0.0031 REMARK 3 S31: 0.0836 S32: -0.0397 S33: 0.0551 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 84.6602 67.5002 35.2078 REMARK 3 T TENSOR REMARK 3 T11: 0.1955 T22: 0.2074 REMARK 3 T33: 0.1904 T12: -0.0427 REMARK 3 T13: 0.0311 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 2.3755 L22: 5.4847 REMARK 3 L33: 0.9440 L12: -2.7879 REMARK 3 L13: -1.0325 L23: 1.5205 REMARK 3 S TENSOR REMARK 3 S11: 0.1096 S12: -0.0044 S13: -0.0475 REMARK 3 S21: -0.0916 S22: -0.0686 S23: -0.0315 REMARK 3 S31: -0.0582 S32: -0.1146 S33: -0.0389 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.5372 85.2589 43.3856 REMARK 3 T TENSOR REMARK 3 T11: 0.3277 T22: 0.2338 REMARK 3 T33: 0.1827 T12: 0.0011 REMARK 3 T13: 0.1081 T23: 0.0357 REMARK 3 L TENSOR REMARK 3 L11: 9.8467 L22: 8.4365 REMARK 3 L33: 4.0375 L12: -4.0470 REMARK 3 L13: -0.0697 L23: -0.4660 REMARK 3 S TENSOR REMARK 3 S11: 0.1343 S12: -0.3656 S13: 0.3778 REMARK 3 S21: 0.8301 S22: -0.1613 S23: 0.3902 REMARK 3 S31: -0.6092 S32: -0.2147 S33: -0.0223 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 85.9678 72.1848 11.3621 REMARK 3 T TENSOR REMARK 3 T11: 0.2020 T22: 0.2013 REMARK 3 T33: 0.1494 T12: -0.0166 REMARK 3 T13: 0.0088 T23: -0.0440 REMARK 3 L TENSOR REMARK 3 L11: 4.1153 L22: 5.3797 REMARK 3 L33: 2.4526 L12: -1.3437 REMARK 3 L13: 0.3556 L23: -2.9836 REMARK 3 S TENSOR REMARK 3 S11: 0.0558 S12: 0.2700 S13: -0.2089 REMARK 3 S21: -0.3543 S22: -0.0243 S23: 0.1015 REMARK 3 S31: 0.0775 S32: -0.0691 S33: -0.0370 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 92.7571 77.3440 6.0179 REMARK 3 T TENSOR REMARK 3 T11: 0.2303 T22: 0.2622 REMARK 3 T33: 0.1654 T12: -0.0117 REMARK 3 T13: 0.0186 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.9704 L22: 3.4501 REMARK 3 L33: 1.1754 L12: -0.9293 REMARK 3 L13: 0.2617 L23: -0.5810 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: 0.2831 S13: 0.0210 REMARK 3 S21: -0.1596 S22: -0.0428 S23: -0.1904 REMARK 3 S31: 0.0042 S32: 0.1916 S33: 0.0446 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 47 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 83.2107 75.0435 17.5436 REMARK 3 T TENSOR REMARK 3 T11: 0.1568 T22: 0.1510 REMARK 3 T33: 0.1642 T12: -0.0264 REMARK 3 T13: 0.0177 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.7266 L22: 1.1413 REMARK 3 L33: 1.0512 L12: -0.3268 REMARK 3 L13: 0.0822 L23: 0.1690 REMARK 3 S TENSOR REMARK 3 S11: 0.0128 S12: 0.0281 S13: -0.1420 REMARK 3 S21: -0.0270 S22: -0.0426 S23: 0.1694 REMARK 3 S31: 0.0530 S32: -0.1486 S33: 0.0454 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 108 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 93.6823 94.9389 12.3450 REMARK 3 T TENSOR REMARK 3 T11: 0.2705 T22: 0.2451 REMARK 3 T33: 0.2334 T12: 0.0360 REMARK 3 T13: 0.0319 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 8.3672 L22: 4.6403 REMARK 3 L33: 4.6679 L12: 2.4258 REMARK 3 L13: -3.3636 L23: 2.6131 REMARK 3 S TENSOR REMARK 3 S11: 0.1523 S12: 0.7532 S13: 0.4606 REMARK 3 S21: -0.8230 S22: -0.2031 S23: -0.2402 REMARK 3 S31: -0.5419 S32: -0.2502 S33: -0.0598 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 95.2523 78.7836 20.3874 REMARK 3 T TENSOR REMARK 3 T11: 0.1443 T22: 0.1655 REMARK 3 T33: 0.1508 T12: -0.0118 REMARK 3 T13: 0.0113 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.9542 L22: 2.1013 REMARK 3 L33: 0.6674 L12: -0.4207 REMARK 3 L13: 0.0364 L23: -0.3442 REMARK 3 S TENSOR REMARK 3 S11: -0.0526 S12: 0.0329 S13: -0.0090 REMARK 3 S21: -0.0236 S22: -0.0000 S23: -0.0880 REMARK 3 S31: 0.0302 S32: -0.0010 S33: 0.0366 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 155 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 105.8989 63.9746 12.4992 REMARK 3 T TENSOR REMARK 3 T11: 0.2646 T22: 0.2175 REMARK 3 T33: 0.2189 T12: 0.0144 REMARK 3 T13: 0.0482 T23: -0.0499 REMARK 3 L TENSOR REMARK 3 L11: 6.1619 L22: 4.2356 REMARK 3 L33: 0.4570 L12: 4.4212 REMARK 3 L13: -1.4894 L23: -1.1119 REMARK 3 S TENSOR REMARK 3 S11: -0.1974 S12: 0.0316 S13: -0.3966 REMARK 3 S21: -0.1596 S22: 0.1248 S23: -0.3491 REMARK 3 S31: 0.1727 S32: 0.0976 S33: 0.0637 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 172 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): 121.1676 81.7985 2.1353 REMARK 3 T TENSOR REMARK 3 T11: 0.3335 T22: 0.3167 REMARK 3 T33: 0.2187 T12: -0.0174 REMARK 3 T13: 0.0540 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 9.2738 L22: 4.8964 REMARK 3 L33: 6.4590 L12: 2.2948 REMARK 3 L13: -0.4561 L23: 0.3027 REMARK 3 S TENSOR REMARK 3 S11: -0.1445 S12: 0.4888 S13: 0.3996 REMARK 3 S21: -0.6498 S22: 0.1323 S23: -0.4486 REMARK 3 S31: -0.3867 S32: 0.2412 S33: 0.0481 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YCJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207202. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36064 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.842 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 44.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42100 REMARK 200 FOR SHELL : 5.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4YCB CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (V/V) PEG 4000, 0.1 M TRIS-HCL, REMARK 280 0.2 M LITHIUM SULFATE, PH 8.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 49.88050 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 49.88050 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 82.50400 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 49.88050 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 49.88050 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 82.50400 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 49.88050 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 49.88050 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 82.50400 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 49.88050 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 49.88050 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 82.50400 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 49.88050 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 49.88050 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 82.50400 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 49.88050 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 49.88050 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 82.50400 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 49.88050 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 49.88050 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 82.50400 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 49.88050 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 49.88050 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 82.50400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -153.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 199.52200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 199.52200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 199.52200 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 199.52200 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 PRO A 6 REMARK 465 LEU A 7 REMARK 465 PRO A 8 REMARK 465 SER A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 ALA A 13 REMARK 465 LEU A 14 REMARK 465 GLU A 15 REMARK 465 ASP A 16 REMARK 465 LYS A 17 REMARK 465 ALA A 18 REMARK 465 ALA A 19 REMARK 465 GLU A 180 REMARK 465 ASP A 181 REMARK 465 LYS A 182 REMARK 465 MET B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 THR B 4 REMARK 465 ALA B 5 REMARK 465 PRO B 6 REMARK 465 LEU B 7 REMARK 465 PRO B 8 REMARK 465 SER B 9 REMARK 465 ALA B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 ALA B 13 REMARK 465 LEU B 14 REMARK 465 GLU B 15 REMARK 465 ASP B 16 REMARK 465 LYS B 17 REMARK 465 ALA B 18 REMARK 465 ALA B 19 REMARK 465 LYS B 182 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 344 O HOH B 433 2.14 REMARK 500 O HOH A 431 O HOH A 436 2.17 REMARK 500 O HOH A 414 O HOH A 417 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 123 36.54 -84.37 REMARK 500 GLN B 123 36.10 -82.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 476 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH B 478 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH B 479 DISTANCE = 6.05 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U11 RELATED DB: PDB REMARK 900 WILD-TYPE AAPURE REMARK 900 RELATED ID: 4YCB RELATED DB: PDB REMARK 900 SINGLE-TRYPTOPHAN MUTANT CONTAINING WILD-TYPE Y154. REMARK 900 RELATED ID: 4YCC RELATED DB: PDB REMARK 900 SINGLE-TRYPTOPHAN MUTANT CONTAINING ADDITIONAL Y154L MUTANT. REMARK 900 RELATED ID: 4YCD RELATED DB: PDB REMARK 900 SINGLE-TRYPTOPHAN MUTANT CONTAINING ADDITIONAL Y154F MUTANT. DBREF1 4YCJ A 1 182 UNP A0A063X4U8_ACEAC DBREF2 4YCJ A A0A063X4U8 1 182 DBREF1 4YCJ B 1 182 UNP A0A063X4U8_ACEAC DBREF2 4YCJ B A0A063X4U8 1 182 SEQADV 4YCJ MET A 0 UNP A0A063X4U INITIATING METHIONINE SEQADV 4YCJ PHE A 154 UNP A0A063X4U TYR 154 ENGINEERED MUTATION SEQADV 4YCJ MET B 0 UNP A0A063X4U INITIATING METHIONINE SEQADV 4YCJ PHE B 154 UNP A0A063X4U TYR 154 ENGINEERED MUTATION SEQRES 1 A 183 MET MET SER GLU THR ALA PRO LEU PRO SER ALA SER SER SEQRES 2 A 183 ALA LEU GLU ASP LYS ALA ALA SER ALA PRO VAL VAL GLY SEQRES 3 A 183 ILE ILE MET GLY SER GLN SER ASP TRP GLU THR MET ARG SEQRES 4 A 183 HIS ALA ASP ALA LEU LEU THR GLU LEU GLU ILE PRO HIS SEQRES 5 A 183 GLU THR LEU ILE VAL SER ALA HIS ARG THR PRO ASP ARG SEQRES 6 A 183 LEU ALA ASP TYR ALA ARG THR ALA ALA GLU ARG GLY LEU SEQRES 7 A 183 ASN VAL ILE ILE ALA GLY ALA GLY GLY ALA ALA HIS LEU SEQRES 8 A 183 PRO GLY MET CYS ALA ALA TRP THR ARG LEU PRO VAL LEU SEQRES 9 A 183 GLY VAL PRO VAL GLU SER ARG ALA LEU LYS GLY MET ASP SEQRES 10 A 183 SER LEU LEU SER ILE VAL GLN MET PRO GLY GLY VAL PRO SEQRES 11 A 183 VAL GLY THR LEU ALA ILE GLY ALA SER GLY ALA LYS ASN SEQRES 12 A 183 ALA ALA LEU LEU ALA ALA SER ILE LEU ALA LEU PHE ASN SEQRES 13 A 183 PRO ALA LEU ALA ALA ARG LEU GLU THR TRP ARG ALA LEU SEQRES 14 A 183 GLN THR ALA SER VAL PRO ASN SER PRO ILE THR GLU ASP SEQRES 15 A 183 LYS SEQRES 1 B 183 MET MET SER GLU THR ALA PRO LEU PRO SER ALA SER SER SEQRES 2 B 183 ALA LEU GLU ASP LYS ALA ALA SER ALA PRO VAL VAL GLY SEQRES 3 B 183 ILE ILE MET GLY SER GLN SER ASP TRP GLU THR MET ARG SEQRES 4 B 183 HIS ALA ASP ALA LEU LEU THR GLU LEU GLU ILE PRO HIS SEQRES 5 B 183 GLU THR LEU ILE VAL SER ALA HIS ARG THR PRO ASP ARG SEQRES 6 B 183 LEU ALA ASP TYR ALA ARG THR ALA ALA GLU ARG GLY LEU SEQRES 7 B 183 ASN VAL ILE ILE ALA GLY ALA GLY GLY ALA ALA HIS LEU SEQRES 8 B 183 PRO GLY MET CYS ALA ALA TRP THR ARG LEU PRO VAL LEU SEQRES 9 B 183 GLY VAL PRO VAL GLU SER ARG ALA LEU LYS GLY MET ASP SEQRES 10 B 183 SER LEU LEU SER ILE VAL GLN MET PRO GLY GLY VAL PRO SEQRES 11 B 183 VAL GLY THR LEU ALA ILE GLY ALA SER GLY ALA LYS ASN SEQRES 12 B 183 ALA ALA LEU LEU ALA ALA SER ILE LEU ALA LEU PHE ASN SEQRES 13 B 183 PRO ALA LEU ALA ALA ARG LEU GLU THR TRP ARG ALA LEU SEQRES 14 B 183 GLN THR ALA SER VAL PRO ASN SER PRO ILE THR GLU ASP SEQRES 15 B 183 LYS HET EDO A 200 4 HET EDO B 200 4 HET SO4 B 201 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *355(H2 O) HELIX 1 AA1 SER A 30 SER A 32 5 3 HELIX 2 AA2 ASP A 33 LEU A 47 1 15 HELIX 3 AA3 THR A 61 ALA A 72 1 12 HELIX 4 AA4 HIS A 89 THR A 98 1 10 HELIX 5 AA5 GLY A 114 GLN A 123 1 10 HELIX 6 AA6 GLY A 136 LEU A 153 1 18 HELIX 7 AA7 ASN A 155 VAL A 173 1 19 HELIX 8 AA8 SER B 30 SER B 32 5 3 HELIX 9 AA9 ASP B 33 LEU B 47 1 15 HELIX 10 AB1 THR B 61 ALA B 72 1 12 HELIX 11 AB2 HIS B 89 THR B 98 1 10 HELIX 12 AB3 GLY B 114 GLN B 123 1 10 HELIX 13 AB4 GLY B 136 LEU B 153 1 18 HELIX 14 AB5 ASN B 155 SER B 172 1 18 SHEET 1 AA1 5 HIS A 51 ILE A 55 0 SHEET 2 AA1 5 VAL A 24 MET A 28 1 N ILE A 26 O LEU A 54 SHEET 3 AA1 5 VAL A 79 GLY A 85 1 O ILE A 81 N GLY A 25 SHEET 4 AA1 5 VAL A 102 VAL A 107 1 O LEU A 103 N ILE A 80 SHEET 5 AA1 5 GLY A 131 THR A 132 1 O GLY A 131 N GLY A 104 SHEET 1 AA2 5 HIS B 51 ILE B 55 0 SHEET 2 AA2 5 VAL B 24 MET B 28 1 N ILE B 26 O GLU B 52 SHEET 3 AA2 5 VAL B 79 GLY B 85 1 O ILE B 81 N GLY B 25 SHEET 4 AA2 5 VAL B 102 VAL B 107 1 O LEU B 103 N ILE B 80 SHEET 5 AA2 5 GLY B 131 THR B 132 1 O GLY B 131 N GLY B 104 SITE 1 AC1 5 ASN A 175 SER A 176 HOH A 306 HOH A 310 SITE 2 AC1 5 HOH A 397 SITE 1 AC2 2 ASP B 67 ARG B 75 SITE 1 AC3 2 ARG B 38 HIS B 39 CRYST1 99.761 99.761 165.008 90.00 90.00 90.00 I 4 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010024 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010024 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006060 0.00000