HEADER HYDROLASE 20-FEB-15 4YCN TITLE CRYSTAL STRUCTURE OF THE CALCIUM PUMP WITH BOUND MARINE MACROLIDE BLLB COMPND MOL_ID: 1; COMPND 2 MOLECULE: SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SR CA(2+)-ATPASE 1,CALCIUM PUMP 1,CALCIUM-TRANSPORTING COMPND 5 ATPASE SARCOPLASMIC RETICULUM TYPE,FAST TWITCH SKELETAL MUSCLE COMPND 6 ISOFORM,ENDOPLASMIC RETICULUM CLASS 1/2 CA(2+) ATPASE; COMPND 7 EC: 3.6.3.8 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986 KEYWDS MEMBRANE PROTEIN, P-TYPE ATPASE, HAD FOLD, CA2+, ION PUMP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MORITA,H.OGAWA,O.OHNO,T.YAMORI,K.SUENAGA,C.TOYOSHIMA REVDAT 2 05-FEB-20 4YCN 1 JRNL REMARK REVDAT 1 13-JAN-16 4YCN 0 JRNL AUTH M.MORITA,H.OGAWA,O.OHNO,T.YAMORI,K.SUENAGA,C.TOYOSHIMA JRNL TITL BISELYNGBYASIDES, CYTOTOXIC MARINE MACROLIDES, ARE NOVEL AND JRNL TITL 2 POTENT INHIBITORS OF THE CA(2+) PUMPS WITH A UNIQUE MODE OF JRNL TITL 3 BINDING JRNL REF FEBS LETT. V. 589 1406 2015 JRNL REFN ISSN 0014-5793 JRNL PMID 25957767 JRNL DOI 10.1016/J.FEBSLET.2015.04.056 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 19476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 624 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 15.9970 - 5.4994 0.99 5158 156 0.1892 0.2257 REMARK 3 2 5.4994 - 4.3949 0.99 4904 149 0.2108 0.2349 REMARK 3 3 4.3949 - 3.8482 0.98 4711 178 0.2208 0.2541 REMARK 3 4 3.8482 - 3.5003 0.85 4079 141 0.2564 0.3159 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.001 7891 REMARK 3 ANGLE : 0.406 10694 REMARK 3 CHIRALITY : 0.018 1243 REMARK 3 PLANARITY : 0.002 1361 REMARK 3 DIHEDRAL : 10.276 2925 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6842 -12.1189 46.9840 REMARK 3 T TENSOR REMARK 3 T11: 0.6486 T22: 1.1935 REMARK 3 T33: 0.7219 T12: 0.0813 REMARK 3 T13: -0.0472 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.7469 L22: 0.5447 REMARK 3 L33: 2.8931 L12: -0.6839 REMARK 3 L13: 1.6104 L23: -1.2868 REMARK 3 S TENSOR REMARK 3 S11: -0.2184 S12: -0.5751 S13: 0.1438 REMARK 3 S21: 0.2188 S22: -0.0041 S23: 0.0933 REMARK 3 S31: -0.1323 S32: -0.6584 S33: 0.3586 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5432 -1.5042 16.3832 REMARK 3 T TENSOR REMARK 3 T11: 0.4909 T22: 0.2632 REMARK 3 T33: 0.6323 T12: 0.0560 REMARK 3 T13: -0.1038 T23: 0.0429 REMARK 3 L TENSOR REMARK 3 L11: 2.0420 L22: 3.0775 REMARK 3 L33: 2.9610 L12: 0.4837 REMARK 3 L13: 0.4023 L23: -0.1388 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: -0.0036 S13: 0.4233 REMARK 3 S21: -0.3144 S22: 0.2834 S23: -0.0691 REMARK 3 S31: -0.3928 S32: -0.0530 S33: 0.0356 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 373 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3936 -15.4497 46.0033 REMARK 3 T TENSOR REMARK 3 T11: 0.5176 T22: 0.5566 REMARK 3 T33: 0.5433 T12: 0.0190 REMARK 3 T13: -0.0423 T23: 0.0876 REMARK 3 L TENSOR REMARK 3 L11: 0.5597 L22: 0.6790 REMARK 3 L33: 1.5056 L12: -0.3566 REMARK 3 L13: 1.0478 L23: -0.1806 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: -0.2348 S13: -0.0544 REMARK 3 S21: 0.3128 S22: 0.1845 S23: 0.1622 REMARK 3 S31: -0.1800 S32: -0.2098 S33: -0.0118 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 374 THROUGH 554 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8377 8.6755 1.0133 REMARK 3 T TENSOR REMARK 3 T11: 0.4773 T22: 0.5476 REMARK 3 T33: 0.6884 T12: -0.1640 REMARK 3 T13: -0.1076 T23: 0.2337 REMARK 3 L TENSOR REMARK 3 L11: 4.0107 L22: 2.4988 REMARK 3 L33: 2.6970 L12: -0.3579 REMARK 3 L13: 0.2578 L23: 0.2757 REMARK 3 S TENSOR REMARK 3 S11: -0.3087 S12: 0.0027 S13: 0.5284 REMARK 3 S21: 0.0555 S22: 0.2102 S23: 0.1148 REMARK 3 S31: -0.2848 S32: 0.2213 S33: 0.0027 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 555 THROUGH 831 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.6075 -12.5631 32.0136 REMARK 3 T TENSOR REMARK 3 T11: 0.4694 T22: 0.5188 REMARK 3 T33: 0.5775 T12: 0.0252 REMARK 3 T13: -0.1183 T23: 0.0863 REMARK 3 L TENSOR REMARK 3 L11: 0.9590 L22: 0.5989 REMARK 3 L33: 3.5046 L12: 0.0883 REMARK 3 L13: 0.1877 L23: -0.8333 REMARK 3 S TENSOR REMARK 3 S11: 0.1273 S12: -0.0884 S13: 0.0117 REMARK 3 S21: 0.0152 S22: -0.1719 S23: 0.0074 REMARK 3 S31: 0.3035 S32: 0.4404 S33: 0.0155 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 832 THROUGH 994 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.8134 -17.1914 79.4019 REMARK 3 T TENSOR REMARK 3 T11: 1.0983 T22: 1.5631 REMARK 3 T33: 0.7229 T12: -0.0486 REMARK 3 T13: -0.1715 T23: 0.1067 REMARK 3 L TENSOR REMARK 3 L11: 1.2622 L22: 1.7083 REMARK 3 L33: 1.7647 L12: 0.4012 REMARK 3 L13: 0.9825 L23: -0.7328 REMARK 3 S TENSOR REMARK 3 S11: 0.1679 S12: -0.7560 S13: -0.0823 REMARK 3 S21: 0.5866 S22: -0.0243 S23: -0.0591 REMARK 3 S31: -0.2577 S32: 0.5046 S33: -0.0855 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YCN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207216. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : DENZO, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 206048 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 14.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.07% C12E8, 0.5 MG ML-1 REMARK 280 PHOSPHATIDYLCHOLINE (PC), 1 MM MGCL2, 18% GLYCEROL, 0.05 MM BLLB, REMARK 280 AND 2 MM EGTA, 10 MM MOPS, 10 MM MES, THE RESERVOIR CONSISTED REMARK 280 OF 16% GLYCEROL, 14% PEG3350, 1 MM MGCL2, 200 MM MGSO4, 1 MM REMARK 280 EGTA, PH 6.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 293.83450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.77000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.77000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 146.91725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.77000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.77000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 440.75175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.77000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.77000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 146.91725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.77000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.77000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 440.75175 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 293.83450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 3 46.89 -101.54 REMARK 500 LEU A 49 -148.02 -152.51 REMARK 500 PHE A 57 45.56 -104.20 REMARK 500 GLU A 83 107.29 -57.50 REMARK 500 THR A 84 -74.95 -75.66 REMARK 500 THR A 86 59.61 -109.16 REMARK 500 ALA A 87 -49.07 -130.84 REMARK 500 TRP A 107 86.92 -68.88 REMARK 500 ALA A 112 100.64 -169.16 REMARK 500 GLN A 177 46.00 -88.10 REMARK 500 THR A 181 -32.61 -130.22 REMARK 500 SER A 184 21.87 -78.59 REMARK 500 SER A 186 99.77 -65.19 REMARK 500 ARG A 198 47.36 -101.98 REMARK 500 ALA A 224 -62.56 -90.06 REMARK 500 ASN A 275 37.45 -87.85 REMARK 500 ASN A 280 44.75 -99.91 REMARK 500 ASN A 330 61.37 61.79 REMARK 500 ARG A 334 -66.44 -92.23 REMARK 500 LYS A 371 143.00 -174.06 REMARK 500 GLU A 392 96.82 -68.91 REMARK 500 CYS A 420 68.90 -68.79 REMARK 500 LYS A 492 71.14 57.57 REMARK 500 LYS A 502 78.21 -68.47 REMARK 500 SER A 503 -26.71 -142.80 REMARK 500 SER A 504 86.22 62.81 REMARK 500 THR A 569 77.92 -117.49 REMARK 500 VAL A 648 21.11 -144.61 REMARK 500 CYS A 674 34.09 -157.02 REMARK 500 CYS A 675 103.13 -167.44 REMARK 500 ASP A 703 -33.53 -137.67 REMARK 500 MET A 857 -76.32 -105.50 REMARK 500 TYR A 858 74.51 -107.88 REMARK 500 GLN A 875 48.47 -99.60 REMARK 500 PRO A 952 -9.48 -57.53 REMARK 500 ASN A 990 -66.38 -102.27 REMARK 500 LEU A 992 -44.47 -147.83 REMARK 500 GLU A 993 97.47 -66.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PTY A 1005 REMARK 610 PTY A 1006 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 244 OE1 REMARK 620 2 LEU A 711 O 146.7 REMARK 620 3 LYS A 712 O 67.4 81.2 REMARK 620 4 ALA A 714 O 92.2 71.7 81.1 REMARK 620 5 GLU A 732 OE1 127.9 84.6 163.8 101.8 REMARK 620 6 GLU A 732 OE2 82.7 130.5 146.2 116.8 46.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7BL A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PTY A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PTY A 1006 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YCM RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS SEQUENCE IS ISOFORM SERCA1A (IDENTIFIER: P04191-2). DBREF 4YCN A 1 994 UNP P04191 AT2A1_RABIT 1 994 SEQRES 1 A 994 AME GLU ALA ALA HIS SER LYS SER THR GLU GLU CYS LEU SEQRES 2 A 994 ALA TYR PHE GLY VAL SER GLU THR THR GLY LEU THR PRO SEQRES 3 A 994 ASP GLN VAL LYS ARG HIS LEU GLU LYS TYR GLY HIS ASN SEQRES 4 A 994 GLU LEU PRO ALA GLU GLU GLY LYS SER LEU TRP GLU LEU SEQRES 5 A 994 VAL ILE GLU GLN PHE GLU ASP LEU LEU VAL ARG ILE LEU SEQRES 6 A 994 LEU LEU ALA ALA CYS ILE SER PHE VAL LEU ALA TRP PHE SEQRES 7 A 994 GLU GLU GLY GLU GLU THR ILE THR ALA PHE VAL GLU PRO SEQRES 8 A 994 PHE VAL ILE LEU LEU ILE LEU ILE ALA ASN ALA ILE VAL SEQRES 9 A 994 GLY VAL TRP GLN GLU ARG ASN ALA GLU ASN ALA ILE GLU SEQRES 10 A 994 ALA LEU LYS GLU TYR GLU PRO GLU MET GLY LYS VAL TYR SEQRES 11 A 994 ARG ALA ASP ARG LYS SER VAL GLN ARG ILE LYS ALA ARG SEQRES 12 A 994 ASP ILE VAL PRO GLY ASP ILE VAL GLU VAL ALA VAL GLY SEQRES 13 A 994 ASP LYS VAL PRO ALA ASP ILE ARG ILE LEU SER ILE LYS SEQRES 14 A 994 SER THR THR LEU ARG VAL ASP GLN SER ILE LEU THR GLY SEQRES 15 A 994 GLU SER VAL SER VAL ILE LYS HIS THR GLU PRO VAL PRO SEQRES 16 A 994 ASP PRO ARG ALA VAL ASN GLN ASP LYS LYS ASN MET LEU SEQRES 17 A 994 PHE SER GLY THR ASN ILE ALA ALA GLY LYS ALA LEU GLY SEQRES 18 A 994 ILE VAL ALA THR THR GLY VAL SER THR GLU ILE GLY LYS SEQRES 19 A 994 ILE ARG ASP GLN MET ALA ALA THR GLU GLN ASP LYS THR SEQRES 20 A 994 PRO LEU GLN GLN LYS LEU ASP GLU PHE GLY GLU GLN LEU SEQRES 21 A 994 SER LYS VAL ILE SER LEU ILE CYS VAL ALA VAL TRP LEU SEQRES 22 A 994 ILE ASN ILE GLY HIS PHE ASN ASP PRO VAL HIS GLY GLY SEQRES 23 A 994 SER TRP ILE ARG GLY ALA ILE TYR TYR PHE LYS ILE ALA SEQRES 24 A 994 VAL ALA LEU ALA VAL ALA ALA ILE PRO GLU GLY LEU PRO SEQRES 25 A 994 ALA VAL ILE THR THR CYS LEU ALA LEU GLY THR ARG ARG SEQRES 26 A 994 MET ALA LYS LYS ASN ALA ILE VAL ARG SER LEU PRO SER SEQRES 27 A 994 VAL GLU THR LEU GLY CYS THR SER VAL ILE CYS SER ASP SEQRES 28 A 994 LYS THR GLY THR LEU THR THR ASN GLN MET SER VAL CYS SEQRES 29 A 994 LYS MET PHE ILE ILE ASP LYS VAL ASP GLY ASP PHE CYS SEQRES 30 A 994 SER LEU ASN GLU PHE SER ILE THR GLY SER THR TYR ALA SEQRES 31 A 994 PRO GLU GLY GLU VAL LEU LYS ASN ASP LYS PRO ILE ARG SEQRES 32 A 994 SER GLY GLN PHE ASP GLY LEU VAL GLU LEU ALA THR ILE SEQRES 33 A 994 CYS ALA LEU CYS ASN ASP SER SER LEU ASP PHE ASN GLU SEQRES 34 A 994 THR LYS GLY VAL TYR GLU LYS VAL GLY GLU ALA THR GLU SEQRES 35 A 994 THR ALA LEU THR THR LEU VAL GLU LYS MET ASN VAL PHE SEQRES 36 A 994 ASN THR GLU VAL ARG ASN LEU SER LYS VAL GLU ARG ALA SEQRES 37 A 994 ASN ALA CYS ASN SER VAL ILE ARG GLN LEU MET LYS LYS SEQRES 38 A 994 GLU PHE THR LEU GLU PHE SER ARG ASP ARG LYS SER MET SEQRES 39 A 994 SER VAL TYR CYS SER PRO ALA LYS SER SER ARG ALA ALA SEQRES 40 A 994 VAL GLY ASN LYS MET PHE VAL LYS GLY ALA PRO GLU GLY SEQRES 41 A 994 VAL ILE ASP ARG CYS ASN TYR VAL ARG VAL GLY THR THR SEQRES 42 A 994 ARG VAL PRO MET THR GLY PRO VAL LYS GLU LYS ILE LEU SEQRES 43 A 994 SER VAL ILE LYS GLU TRP GLY THR GLY ARG ASP THR LEU SEQRES 44 A 994 ARG CYS LEU ALA LEU ALA THR ARG ASP THR PRO PRO LYS SEQRES 45 A 994 ARG GLU GLU MET VAL LEU ASP ASP SER SER ARG PHE MET SEQRES 46 A 994 GLU TYR GLU THR ASP LEU THR PHE VAL GLY VAL VAL GLY SEQRES 47 A 994 MET LEU ASP PRO PRO ARG LYS GLU VAL MET GLY SER ILE SEQRES 48 A 994 GLN LEU CYS ARG ASP ALA GLY ILE ARG VAL ILE MET ILE SEQRES 49 A 994 THR GLY ASP ASN LYS GLY THR ALA ILE ALA ILE CYS ARG SEQRES 50 A 994 ARG ILE GLY ILE PHE GLY GLU ASN GLU GLU VAL ALA ASP SEQRES 51 A 994 ARG ALA TYR THR GLY ARG GLU PHE ASP ASP LEU PRO LEU SEQRES 52 A 994 ALA GLU GLN ARG GLU ALA CYS ARG ARG ALA CYS CYS PHE SEQRES 53 A 994 ALA ARG VAL GLU PRO SER HIS LYS SER LYS ILE VAL GLU SEQRES 54 A 994 TYR LEU GLN SER TYR ASP GLU ILE THR ALA MET THR GLY SEQRES 55 A 994 ASP GLY VAL ASN ASP ALA PRO ALA LEU LYS LYS ALA GLU SEQRES 56 A 994 ILE GLY ILE ALA MET GLY SER GLY THR ALA VAL ALA LYS SEQRES 57 A 994 THR ALA SER GLU MET VAL LEU ALA ASP ASP ASN PHE SER SEQRES 58 A 994 THR ILE VAL ALA ALA VAL GLU GLU GLY ARG ALA ILE TYR SEQRES 59 A 994 ASN ASN MET LYS GLN PHE ILE ARG TYR LEU ILE SER SER SEQRES 60 A 994 ASN VAL GLY GLU VAL VAL CYS ILE PHE LEU THR ALA ALA SEQRES 61 A 994 LEU GLY LEU PRO GLU ALA LEU ILE PRO VAL GLN LEU LEU SEQRES 62 A 994 TRP VAL ASN LEU VAL THR ASP GLY LEU PRO ALA THR ALA SEQRES 63 A 994 LEU GLY PHE ASN PRO PRO ASP LEU ASP ILE MET ASP ARG SEQRES 64 A 994 PRO PRO ARG SER PRO LYS GLU PRO LEU ILE SER GLY TRP SEQRES 65 A 994 LEU PHE PHE ARG TYR MET ALA ILE GLY GLY TYR VAL GLY SEQRES 66 A 994 ALA ALA THR VAL GLY ALA ALA ALA TRP TRP PHE MET TYR SEQRES 67 A 994 ALA GLU ASP GLY PRO GLY VAL THR TYR HIS GLN LEU THR SEQRES 68 A 994 HIS PHE MET GLN CYS THR GLU ASP HIS PRO HIS PHE GLU SEQRES 69 A 994 GLY LEU ASP CYS GLU ILE PHE GLU ALA PRO GLU PRO MET SEQRES 70 A 994 THR MET ALA LEU SER VAL LEU VAL THR ILE GLU MET CYS SEQRES 71 A 994 ASN ALA LEU ASN SER LEU SER GLU ASN GLN SER LEU MET SEQRES 72 A 994 ARG MET PRO PRO TRP VAL ASN ILE TRP LEU LEU GLY SER SEQRES 73 A 994 ILE CYS LEU SER MET SER LEU HIS PHE LEU ILE LEU TYR SEQRES 74 A 994 VAL ASP PRO LEU PRO MET ILE PHE LYS LEU LYS ALA LEU SEQRES 75 A 994 ASP LEU THR GLN TRP LEU MET VAL LEU LYS ILE SER LEU SEQRES 76 A 994 PRO VAL ILE GLY LEU ASP GLU ILE LEU LYS PHE ILE ALA SEQRES 77 A 994 ARG ASN TYR LEU GLU GLY MODRES 4YCN AME A 1 MET MODIFIED RESIDUE HET AME A 1 11 HET NA A1001 1 HET SO4 A1002 5 HET SO4 A1003 5 HET 7BL A1004 71 HET PTY A1005 19 HET PTY A1006 19 HETNAM AME N-ACETYLMETHIONINE HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION HETNAM 7BL (4S,5E,8S,9E,11S,13E,15E,18R)-4-HYDROXY-8-METHOXY-9,11- HETNAM 2 7BL DIMETHYL-18-[(1Z,4E)-2-METHYLHEXA-1,4-DIEN-1- HETNAM 3 7BL YL]OXACYCLOOCTADECA-5,9,13,15-TETRAEN-2-ONE HETNAM PTY PHOSPHATIDYLETHANOLAMINE HETSYN 7BL BISELYNGBYOLIDE B FORMUL 1 AME C7 H13 N O3 S FORMUL 2 NA NA 1+ FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 7BL C27 H40 O4 FORMUL 6 PTY 2(C40 H80 N O8 P) HELIX 1 AA1 ALA A 3 LYS A 7 5 5 HELIX 2 AA2 SER A 8 GLY A 17 1 10 HELIX 3 AA3 THR A 25 GLY A 37 1 13 HELIX 4 AA4 LEU A 49 PHE A 57 1 9 HELIX 5 AA5 ASP A 59 PHE A 78 1 20 HELIX 6 AA6 PHE A 88 VAL A 106 1 19 HELIX 7 AA7 ASN A 114 LYS A 120 1 7 HELIX 8 AA8 ARG A 143 ILE A 145 5 3 HELIX 9 AA9 GLN A 177 GLY A 182 1 6 HELIX 10 AB1 THR A 226 SER A 229 5 4 HELIX 11 AB2 THR A 230 THR A 242 1 13 HELIX 12 AB3 THR A 247 ASN A 275 1 29 HELIX 13 AB4 ILE A 276 ASP A 281 5 6 HELIX 14 AB5 SER A 287 ILE A 307 1 21 HELIX 15 AB6 GLY A 310 LYS A 329 1 20 HELIX 16 AB7 PRO A 337 LEU A 342 1 6 HELIX 17 AB8 GLY A 343 THR A 345 5 3 HELIX 18 AB9 ARG A 403 GLN A 406 5 4 HELIX 19 AC1 PHE A 407 CYS A 420 1 14 HELIX 20 AC2 GLU A 439 ASN A 453 1 15 HELIX 21 AC3 ASN A 469 LEU A 478 1 10 HELIX 22 AC4 ALA A 517 ILE A 522 1 6 HELIX 23 AC5 THR A 538 GLY A 555 1 18 HELIX 24 AC6 ARG A 583 GLU A 588 1 6 HELIX 25 AC7 GLU A 606 ALA A 617 1 12 HELIX 26 AC8 ASN A 628 GLY A 640 1 13 HELIX 27 AC9 GLY A 655 LEU A 661 1 7 HELIX 28 AD1 PRO A 662 ARG A 671 1 10 HELIX 29 AD2 SER A 682 SER A 693 1 12 HELIX 30 AD3 ASP A 707 ALA A 714 1 8 HELIX 31 AD4 THR A 724 SER A 731 1 8 HELIX 32 AD5 ASN A 739 LEU A 781 1 43 HELIX 33 AD6 ILE A 788 VAL A 798 1 11 HELIX 34 AD7 ASP A 800 LEU A 807 1 8 HELIX 35 AD8 GLY A 808 ASN A 810 5 3 HELIX 36 AD9 GLY A 831 MET A 857 1 27 HELIX 37 AE1 THR A 866 THR A 871 1 6 HELIX 38 AE2 HIS A 872 CYS A 876 5 5 HELIX 39 AE3 ASP A 887 PHE A 891 5 5 HELIX 40 AE4 ALA A 893 SER A 915 1 23 HELIX 41 AE5 ASN A 930 VAL A 950 1 21 HELIX 42 AE6 ASP A 963 LEU A 975 1 13 HELIX 43 AE7 LEU A 975 TYR A 991 1 17 SHEET 1 AA1 6 GLN A 138 LYS A 141 0 SHEET 2 AA1 6 MET A 126 TYR A 130 -1 N GLY A 127 O ILE A 140 SHEET 3 AA1 6 ILE A 150 ALA A 154 -1 O GLU A 152 N LYS A 128 SHEET 4 AA1 6 LYS A 218 THR A 225 -1 O GLY A 221 N VAL A 151 SHEET 5 AA1 6 ASP A 162 ILE A 168 -1 N ARG A 164 O ILE A 222 SHEET 6 AA1 6 MET A 207 LEU A 208 -1 O LEU A 208 N ILE A 163 SHEET 1 AA2 3 VAL A 187 ILE A 188 0 SHEET 2 AA2 3 ARG A 174 ASP A 176 -1 N VAL A 175 O VAL A 187 SHEET 3 AA2 3 ASN A 213 ALA A 216 -1 O ALA A 216 N ARG A 174 SHEET 1 AA3 8 ILE A 332 VAL A 333 0 SHEET 2 AA3 8 MET A 733 LEU A 735 -1 O VAL A 734 N ILE A 332 SHEET 3 AA3 8 ILE A 718 MET A 720 1 N ALA A 719 O LEU A 735 SHEET 4 AA3 8 THR A 698 GLY A 702 1 N MET A 700 O ILE A 718 SHEET 5 AA3 8 VAL A 347 ASP A 351 1 N CYS A 349 O ALA A 699 SHEET 6 AA3 8 ARG A 620 THR A 625 1 O ILE A 624 N SER A 350 SHEET 7 AA3 8 CYS A 675 ALA A 677 1 O PHE A 676 N MET A 623 SHEET 8 AA3 8 TYR A 653 THR A 654 1 N TYR A 653 O ALA A 677 SHEET 1 AA4 8 VAL A 395 LEU A 396 0 SHEET 2 AA4 8 PHE A 376 ILE A 384 -1 N SER A 383 O LEU A 396 SHEET 3 AA4 8 SER A 362 ASP A 373 -1 N CYS A 364 O ILE A 384 SHEET 4 AA4 8 LEU A 591 LEU A 600 -1 O GLY A 598 N LYS A 365 SHEET 5 AA4 8 ARG A 560 ARG A 567 -1 N ARG A 560 O MET A 599 SHEET 6 AA4 8 LYS A 511 GLY A 516 -1 N MET A 512 O ARG A 567 SHEET 7 AA4 8 SER A 493 PRO A 500 -1 N MET A 494 O LYS A 515 SHEET 8 AA4 8 MET A 479 SER A 488 -1 N LEU A 485 O SER A 495 SHEET 1 AA5 6 VAL A 395 LEU A 396 0 SHEET 2 AA5 6 PHE A 376 ILE A 384 -1 N SER A 383 O LEU A 396 SHEET 3 AA5 6 SER A 362 ASP A 373 -1 N CYS A 364 O ILE A 384 SHEET 4 AA5 6 LEU A 591 LEU A 600 -1 O GLY A 598 N LYS A 365 SHEET 5 AA5 6 CYS A 525 VAL A 530 1 N ARG A 529 O PHE A 593 SHEET 6 AA5 6 THR A 533 PRO A 536 -1 O VAL A 535 N VAL A 528 SHEET 1 AA6 2 SER A 424 PHE A 427 0 SHEET 2 AA6 2 TYR A 434 VAL A 437 -1 O GLU A 435 N ASP A 426 SSBOND 1 CYS A 876 CYS A 888 1555 1555 2.03 LINK C AME A 1 N GLU A 2 1555 1555 1.33 LINK OE1 GLN A 244 NA NA A1001 1555 1555 2.65 LINK O LEU A 711 NA NA A1001 1555 1555 3.09 LINK O LYS A 712 NA NA A1001 1555 1555 2.48 LINK O ALA A 714 NA NA A1001 1555 1555 2.90 LINK OE1 GLU A 732 NA NA A1001 1555 1555 3.00 LINK OE2 GLU A 732 NA NA A1001 1555 1555 2.48 SITE 1 AC1 5 GLN A 244 LEU A 711 LYS A 712 ALA A 714 SITE 2 AC1 5 GLU A 732 SITE 1 AC2 4 THR A 353 THR A 625 GLY A 626 ASP A 627 SITE 1 AC3 3 ALA A 517 ASN A 628 ARG A 678 SITE 1 AC4 13 GLN A 56 ASN A 101 VAL A 104 GLY A 105 SITE 2 AC4 13 GLN A 250 LEU A 253 PRO A 308 GLU A 309 SITE 3 AC4 13 LEU A 311 PRO A 312 ILE A 315 THR A 316 SITE 4 AC4 13 PRO A 337 SITE 1 AC5 5 MET A 923 GLU A 982 PHE A 986 ARG A 989 SITE 2 AC5 5 ASN A 990 SITE 1 AC6 4 ILE A 274 ASN A 275 ALA A 780 MET A 923 CRYST1 71.540 71.540 587.669 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013978 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013978 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001702 0.00000 HETATM 1 CT2 AME A 1 2.297 -17.788 17.655 1.00 97.35 C HETATM 2 CT1 AME A 1 1.912 -16.533 18.400 1.00 82.19 C HETATM 3 OT AME A 1 1.211 -16.576 19.416 1.00 90.03 O HETATM 4 CB AME A 1 2.696 -14.572 15.701 1.00 61.14 C HETATM 5 CG AME A 1 1.662 -15.168 14.770 1.00 73.22 C HETATM 6 SD AME A 1 1.318 -14.215 13.284 1.00102.64 S HETATM 7 CE AME A 1 2.630 -14.852 12.247 1.00 77.30 C HETATM 8 C AME A 1 4.720 -15.266 16.979 1.00 46.27 C HETATM 9 O AME A 1 5.068 -14.117 17.229 1.00 61.65 O HETATM 10 N AME A 1 2.408 -15.495 17.945 1.00 54.96 N HETATM 11 CA AME A 1 3.252 -15.574 16.721 1.00 50.06 C