HEADER IMMUNE SYSTEM 22-FEB-15 4YDI TITLE CRYSTAL STRUCTURE OF BROAD AND POTENTLY NEUTRALIZING VRC01-CLASS TITLE 2 ANTIBODY Z258-VRC27.01, ISOLATED FROM HUMAN DONOR Z258, IN COMPLEX TITLE 3 WITH HIV-1 GP120 FROM CLADE A STRAIN Q23.17 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP160; COMPND 3 CHAIN: G; COMPND 4 FRAGMENT: UNP RESIDUES 43-122, 191-293, 315-482; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HEAVY CHAIN OF ANTIBODY Z258-VRC27.01; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: LIGHT CHAIN OF ANTIBODY Z258-VRC27.01; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: ENV; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK 293 GNTI-; SOURCE 9 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-3022; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PVRC8400; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 17 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PVRC8400; SOURCE 22 MOL_ID: 3; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 27 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 29 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 30 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 31 EXPRESSION_SYSTEM_PLASMID: PVRC8400 KEYWDS ANTIBODY, HIV-1, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.ZHOU,S.SRIVATSAN,P.D.KWONG REVDAT 6 09-OCT-24 4YDI 1 REMARK REVDAT 5 27-SEP-23 4YDI 1 HETSYN REVDAT 4 29-JUL-20 4YDI 1 COMPND SOURCE REMARK HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 17-JUN-15 4YDI 1 JRNL REVDAT 2 10-JUN-15 4YDI 1 JRNL REVDAT 1 03-JUN-15 4YDI 0 JRNL AUTH T.ZHOU,R.M.LYNCH,L.CHEN,P.ACHARYA,X.WU,N.A.DORIA-ROSE, JRNL AUTH 2 M.G.JOYCE,D.LINGWOOD,C.SOTO,R.T.BAILER,M.J.ERNANDES,R.KONG, JRNL AUTH 3 N.S.LONGO,M.K.LOUDER,K.MCKEE,S.O'DELL,S.D.SCHMIDT,L.TRAN, JRNL AUTH 4 Z.YANG,A.DRUZ,T.S.LUONGO,S.MOQUIN,S.SRIVATSAN,Y.YANG, JRNL AUTH 5 B.ZHANG,A.ZHENG,M.PANCERA,T.KIRYS,I.S.GEORGIEV,T.GINDIN, JRNL AUTH 6 H.P.PENG,A.S.YANG,J.C.MULLIKIN,M.D.GRAY,L.STAMATATOS, JRNL AUTH 7 D.R.BURTON,W.C.KOFF,M.S.COHEN,B.F.HAYNES,J.P.CASAZZA, JRNL AUTH 8 M.CONNORS,D.CORTI,A.LANZAVECCHIA,Q.J.SATTENTAU,R.A.WEISS, JRNL AUTH 9 A.P.WEST,P.J.BJORKMAN,J.F.SCHEID,M.C.NUSSENZWEIG,L.SHAPIRO, JRNL AUTH10 J.R.MASCOLA,P.D.KWONG JRNL TITL STRUCTURAL REPERTOIRE OF HIV-1-NEUTRALIZING ANTIBODIES JRNL TITL 2 TARGETING THE CD4 SUPERSITE IN 14 DONORS. JRNL REF CELL V. 161 1280 2015 JRNL REFN ISSN 1097-4172 JRNL PMID 26004070 JRNL DOI 10.1016/J.CELL.2015.05.007 REMARK 2 REMARK 2 RESOLUTION. 3.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.3 REMARK 3 NUMBER OF REFLECTIONS : 13215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0420 - 5.8994 1.00 2995 149 0.2203 0.2558 REMARK 3 2 5.8994 - 4.6840 0.99 2860 148 0.2032 0.2800 REMARK 3 3 4.6840 - 4.0924 0.92 2631 148 0.1905 0.2364 REMARK 3 4 4.0924 - 3.7184 0.82 2297 125 0.2609 0.3235 REMARK 3 5 3.7184 - 3.4520 0.63 1757 105 0.2958 0.3519 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 80.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 112.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6309 REMARK 3 ANGLE : 1.021 8600 REMARK 3 CHIRALITY : 0.045 985 REMARK 3 PLANARITY : 0.005 1089 REMARK 3 DIHEDRAL : 12.384 2316 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 44 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.9152 -8.5353 29.5937 REMARK 3 T TENSOR REMARK 3 T11: 1.6900 T22: 1.1910 REMARK 3 T33: 1.2182 T12: 0.3267 REMARK 3 T13: 0.6086 T23: -0.0680 REMARK 3 L TENSOR REMARK 3 L11: 2.6959 L22: 3.8530 REMARK 3 L33: 3.0172 L12: -0.2980 REMARK 3 L13: -0.1147 L23: -2.2455 REMARK 3 S TENSOR REMARK 3 S11: -0.2056 S12: -1.2491 S13: 0.3389 REMARK 3 S21: 1.9528 S22: 0.3263 S23: 0.6935 REMARK 3 S31: -0.2510 S32: -0.0647 S33: -0.0998 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 236 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.4521 -13.1582 22.5290 REMARK 3 T TENSOR REMARK 3 T11: 0.7624 T22: 0.7802 REMARK 3 T33: 0.7921 T12: 0.1963 REMARK 3 T13: -0.0413 T23: -0.0995 REMARK 3 L TENSOR REMARK 3 L11: 3.8933 L22: 6.8246 REMARK 3 L33: 4.3717 L12: 0.0183 REMARK 3 L13: 0.6070 L23: -0.2607 REMARK 3 S TENSOR REMARK 3 S11: -0.1417 S12: -0.8592 S13: 0.0659 REMARK 3 S21: 1.4873 S22: 0.3699 S23: -0.5238 REMARK 3 S31: 0.0620 S32: 0.3391 S33: -0.2217 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 354 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.3079 -6.2276 11.0914 REMARK 3 T TENSOR REMARK 3 T11: 0.4997 T22: 0.5413 REMARK 3 T33: 0.7289 T12: -0.0668 REMARK 3 T13: -0.0476 T23: -0.0549 REMARK 3 L TENSOR REMARK 3 L11: 7.4690 L22: 2.5303 REMARK 3 L33: 4.3022 L12: -4.1662 REMARK 3 L13: 1.2620 L23: -1.2999 REMARK 3 S TENSOR REMARK 3 S11: -0.1605 S12: -0.2969 S13: 0.6267 REMARK 3 S21: 0.7008 S22: 0.2862 S23: -0.9154 REMARK 3 S31: -0.2845 S32: 0.3756 S33: -0.0176 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 447 THROUGH 492 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.4401 -18.3863 18.5760 REMARK 3 T TENSOR REMARK 3 T11: 0.7068 T22: 0.6930 REMARK 3 T33: 0.4962 T12: 0.1402 REMARK 3 T13: -0.1677 T23: -0.1683 REMARK 3 L TENSOR REMARK 3 L11: 5.6225 L22: 5.6003 REMARK 3 L33: 4.3699 L12: 0.2913 REMARK 3 L13: -0.7230 L23: -1.8103 REMARK 3 S TENSOR REMARK 3 S11: -0.0526 S12: -0.3394 S13: 0.2034 REMARK 3 S21: 0.9732 S22: 0.1643 S23: -0.2233 REMARK 3 S31: -0.4442 S32: 0.3193 S33: 0.0396 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 2 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -57.6806 -23.7168 -5.9211 REMARK 3 T TENSOR REMARK 3 T11: 0.5244 T22: 0.5997 REMARK 3 T33: 0.9852 T12: 0.0559 REMARK 3 T13: -0.1376 T23: 0.0690 REMARK 3 L TENSOR REMARK 3 L11: 9.4506 L22: 6.1452 REMARK 3 L33: 8.7432 L12: 0.2860 REMARK 3 L13: -5.9059 L23: 1.5717 REMARK 3 S TENSOR REMARK 3 S11: 0.3166 S12: 0.9097 S13: 0.5445 REMARK 3 S21: -0.5371 S22: 0.0677 S23: 1.5369 REMARK 3 S31: -0.7911 S32: -1.3420 S33: -0.3788 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 34 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.6072 -31.5227 -1.2913 REMARK 3 T TENSOR REMARK 3 T11: 0.2479 T22: 0.6034 REMARK 3 T33: 0.8520 T12: 0.0280 REMARK 3 T13: -0.2074 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.9248 L22: 4.4920 REMARK 3 L33: 7.0780 L12: 2.0235 REMARK 3 L13: 0.1261 L23: 0.9467 REMARK 3 S TENSOR REMARK 3 S11: -0.2588 S12: -0.5889 S13: -0.0392 REMARK 3 S21: -0.3211 S22: 0.1464 S23: -0.5196 REMARK 3 S31: 0.7691 S32: 0.7579 S33: -0.2288 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 52A THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.9965 -21.7850 1.1112 REMARK 3 T TENSOR REMARK 3 T11: 0.7058 T22: 0.5826 REMARK 3 T33: 0.6236 T12: 0.1005 REMARK 3 T13: -0.2386 T23: 0.3006 REMARK 3 L TENSOR REMARK 3 L11: 6.2496 L22: 6.0044 REMARK 3 L33: 4.4050 L12: -0.5339 REMARK 3 L13: -3.6041 L23: 4.0508 REMARK 3 S TENSOR REMARK 3 S11: 0.1722 S12: -0.1184 S13: -0.1183 REMARK 3 S21: -0.5439 S22: 0.3925 S23: 0.4293 REMARK 3 S31: 0.1275 S32: 0.1074 S33: -0.4120 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 67 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.9007 -21.1517 -6.9497 REMARK 3 T TENSOR REMARK 3 T11: 0.8067 T22: 0.4886 REMARK 3 T33: 0.9047 T12: -0.0039 REMARK 3 T13: -0.1988 T23: 0.0902 REMARK 3 L TENSOR REMARK 3 L11: 3.1945 L22: 5.3215 REMARK 3 L33: 8.9285 L12: 2.3627 REMARK 3 L13: -2.2017 L23: 3.4451 REMARK 3 S TENSOR REMARK 3 S11: 0.6167 S12: 0.3294 S13: 0.1517 REMARK 3 S21: -0.8765 S22: -0.4708 S23: 0.2493 REMARK 3 S31: 0.1104 S32: -0.5755 S33: -0.2366 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 88 THROUGH 100D) REMARK 3 ORIGIN FOR THE GROUP (A): -56.6985 -29.6580 5.5915 REMARK 3 T TENSOR REMARK 3 T11: 0.7678 T22: 0.5306 REMARK 3 T33: 1.0183 T12: 0.1669 REMARK 3 T13: 0.0879 T23: 0.0978 REMARK 3 L TENSOR REMARK 3 L11: 4.8334 L22: 4.1043 REMARK 3 L33: 7.7694 L12: -1.8987 REMARK 3 L13: -1.4167 L23: 1.0218 REMARK 3 S TENSOR REMARK 3 S11: -0.3097 S12: -0.4538 S13: 0.0309 REMARK 3 S21: 1.1434 S22: 0.6674 S23: 1.7145 REMARK 3 S31: -0.7625 S32: -0.9138 S33: -0.1802 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 100E THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.0873 -34.9606 -19.7450 REMARK 3 T TENSOR REMARK 3 T11: 1.1151 T22: 1.1857 REMARK 3 T33: 0.5159 T12: -0.0462 REMARK 3 T13: -0.8250 T23: 0.3099 REMARK 3 L TENSOR REMARK 3 L11: 0.6502 L22: 1.0131 REMARK 3 L33: 1.0963 L12: 0.3881 REMARK 3 L13: 0.4988 L23: 0.8467 REMARK 3 S TENSOR REMARK 3 S11: 0.4054 S12: 0.8301 S13: -0.2903 REMARK 3 S21: -0.8934 S22: -0.0875 S23: 0.5820 REMARK 3 S31: 0.5653 S32: 0.1598 S33: -0.0643 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 138 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.2654 -41.0014 -29.7692 REMARK 3 T TENSOR REMARK 3 T11: 2.3856 T22: 0.9265 REMARK 3 T33: 0.8511 T12: 0.3574 REMARK 3 T13: -0.6193 T23: -0.0742 REMARK 3 L TENSOR REMARK 3 L11: 0.2223 L22: 1.8953 REMARK 3 L33: 0.4058 L12: 0.0694 REMARK 3 L13: -0.2357 L23: -0.5948 REMARK 3 S TENSOR REMARK 3 S11: 0.4794 S12: 0.5887 S13: -0.4533 REMARK 3 S21: -0.4735 S22: 0.1184 S23: 0.3581 REMARK 3 S31: 0.2898 S32: 0.3125 S33: -0.3015 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 151 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): -60.3484 -47.9527 -32.7075 REMARK 3 T TENSOR REMARK 3 T11: 1.6524 T22: 1.5834 REMARK 3 T33: 1.1373 T12: 0.2041 REMARK 3 T13: -1.8636 T23: -0.2056 REMARK 3 L TENSOR REMARK 3 L11: 0.9410 L22: 0.0952 REMARK 3 L33: 0.3987 L12: -0.2149 REMARK 3 L13: 0.3298 L23: -0.2291 REMARK 3 S TENSOR REMARK 3 S11: 0.1112 S12: 1.5911 S13: -0.4150 REMARK 3 S21: -0.5831 S22: 0.0047 S23: 0.3241 REMARK 3 S31: -0.1857 S32: -0.6197 S33: -0.3546 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 2 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.1876 -52.8066 3.0673 REMARK 3 T TENSOR REMARK 3 T11: 0.3555 T22: 0.7870 REMARK 3 T33: 1.7620 T12: 0.1714 REMARK 3 T13: -0.5068 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 8.2732 L22: 3.1822 REMARK 3 L33: 3.3733 L12: 1.7769 REMARK 3 L13: 1.6401 L23: -0.0902 REMARK 3 S TENSOR REMARK 3 S11: 0.5684 S12: -0.2191 S13: -0.7299 REMARK 3 S21: 0.1963 S22: 0.0119 S23: -0.2336 REMARK 3 S31: 0.2139 S32: 0.0998 S33: -0.2501 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 19 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.1871 -46.4053 12.2688 REMARK 3 T TENSOR REMARK 3 T11: 0.8569 T22: 0.7410 REMARK 3 T33: 1.3702 T12: 0.2168 REMARK 3 T13: -0.3045 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 4.2188 L22: 4.1634 REMARK 3 L33: 5.9234 L12: 3.7350 REMARK 3 L13: 1.4497 L23: 3.4437 REMARK 3 S TENSOR REMARK 3 S11: -0.6722 S12: -0.5418 S13: 1.4013 REMARK 3 S21: -0.0342 S22: -0.4263 S23: 0.7603 REMARK 3 S31: -1.1249 S32: -0.3366 S33: 1.0877 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 34 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -59.1383 -41.7576 3.8930 REMARK 3 T TENSOR REMARK 3 T11: 0.3924 T22: 0.6639 REMARK 3 T33: 1.2599 T12: 0.1314 REMARK 3 T13: 0.0357 T23: 0.2852 REMARK 3 L TENSOR REMARK 3 L11: 6.4715 L22: 5.2313 REMARK 3 L33: 9.4435 L12: -2.0239 REMARK 3 L13: -0.2384 L23: -1.9936 REMARK 3 S TENSOR REMARK 3 S11: 0.0675 S12: 0.4003 S13: -0.7311 REMARK 3 S21: -0.2162 S22: -0.1710 S23: 1.0473 REMARK 3 S31: 0.0903 S32: -0.5108 S33: 0.1208 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 54 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -57.7576 -48.4513 5.2087 REMARK 3 T TENSOR REMARK 3 T11: 0.4694 T22: 0.5619 REMARK 3 T33: 1.4090 T12: 0.1847 REMARK 3 T13: 0.1490 T23: 0.1241 REMARK 3 L TENSOR REMARK 3 L11: 5.4192 L22: 5.9935 REMARK 3 L33: 5.2138 L12: 2.2224 REMARK 3 L13: 1.2634 L23: 0.7138 REMARK 3 S TENSOR REMARK 3 S11: -0.1043 S12: -0.0978 S13: -0.7037 REMARK 3 S21: 0.7919 S22: 0.3850 S23: 1.0666 REMARK 3 S31: 0.4327 S32: -0.2964 S33: -0.3042 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 109 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.2909 -55.9328 -27.9349 REMARK 3 T TENSOR REMARK 3 T11: 2.0679 T22: 0.9639 REMARK 3 T33: 1.0691 T12: 0.3314 REMARK 3 T13: -0.5959 T23: -0.2583 REMARK 3 L TENSOR REMARK 3 L11: 5.2928 L22: 5.1388 REMARK 3 L33: 3.7600 L12: 1.9962 REMARK 3 L13: -3.3741 L23: -3.9863 REMARK 3 S TENSOR REMARK 3 S11: 0.5085 S12: 1.1339 S13: 0.0934 REMARK 3 S21: -1.0267 S22: -0.2630 S23: 0.5247 REMARK 3 S31: -1.0276 S32: -1.0503 S33: -0.1329 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 144 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.4752 -58.2614 -25.4966 REMARK 3 T TENSOR REMARK 3 T11: 2.1897 T22: 1.2320 REMARK 3 T33: 0.8417 T12: 0.2328 REMARK 3 T13: -0.3877 T23: -0.3702 REMARK 3 L TENSOR REMARK 3 L11: 7.8486 L22: 7.2152 REMARK 3 L33: 2.9987 L12: 3.5063 REMARK 3 L13: 2.2811 L23: -2.6196 REMARK 3 S TENSOR REMARK 3 S11: 0.2762 S12: 1.2616 S13: -0.2552 REMARK 3 S21: -2.6224 S22: -0.2000 S23: 0.1620 REMARK 3 S31: 0.6021 S32: 0.4078 S33: -0.0754 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 156 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.2002 -54.4033 -25.7924 REMARK 3 T TENSOR REMARK 3 T11: 1.9931 T22: 0.8627 REMARK 3 T33: 1.2056 T12: 0.2351 REMARK 3 T13: -0.5034 T23: -0.3098 REMARK 3 L TENSOR REMARK 3 L11: 2.2110 L22: 2.0786 REMARK 3 L33: 2.4724 L12: -1.2195 REMARK 3 L13: 0.2338 L23: -0.1332 REMARK 3 S TENSOR REMARK 3 S11: 0.2780 S12: 1.1106 S13: -1.1995 REMARK 3 S21: -1.5822 S22: -0.6674 S23: 0.7764 REMARK 3 S31: 0.2750 S32: -0.5037 S33: 0.4150 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 199 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.2730 -65.2585 -26.0167 REMARK 3 T TENSOR REMARK 3 T11: 1.7224 T22: 0.8520 REMARK 3 T33: 1.2190 T12: 0.3440 REMARK 3 T13: -0.2421 T23: -0.2783 REMARK 3 L TENSOR REMARK 3 L11: 7.7400 L22: 3.3295 REMARK 3 L33: 6.7719 L12: 2.0946 REMARK 3 L13: -2.4730 L23: -0.3557 REMARK 3 S TENSOR REMARK 3 S11: -0.6642 S12: 1.0790 S13: -1.6964 REMARK 3 S21: -1.7865 S22: -0.7690 S23: -0.1793 REMARK 3 S31: -0.5072 S32: -0.0447 S33: 1.3165 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YDI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207261. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13262 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.6 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.34800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3SE9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% PEG 400, 1.9 M (NH4)2SO4, 0.1M TRIS REMARK 280 -HCL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 70.86900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 86.12650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 70.86900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 86.12650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 70.86900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 86.12650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 70.86900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 86.12650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN G 316 REMARK 465 ASN G 317 REMARK 465 GLY G 318 REMARK 465 GLY G 319 REMARK 465 SER G 320 REMARK 465 GLY G 321 REMARK 465 SER G 322 REMARK 465 GLY G 323 REMARK 465 GLY G 324 REMARK 465 ASP G 405 REMARK 465 SER G 406 REMARK 465 THR G 407 REMARK 465 GLN G 408 REMARK 465 GLU G 409 REMARK 465 SER G 410 REMARK 465 GLU G 492 REMARK 465 SER H 1 REMARK 465 ALA H 125 REMARK 465 PRO H 126 REMARK 465 SER H 127 REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 GLY H 134 REMARK 465 THR H 135 REMARK 465 ALA H 136 REMARK 465 ALA H 137 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 ASP L 1 REMARK 465 CYS L 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL L 110 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU G 122 64.66 -113.43 REMARK 500 GLN G 258 -59.13 71.86 REMARK 500 ASN G 355 69.74 -67.84 REMARK 500 ASN G 392 58.77 -165.93 REMARK 500 ASN G 463 -176.67 -50.52 REMARK 500 VAL G 464 -63.41 85.03 REMARK 500 ARG H 3 132.18 -172.83 REMARK 500 SER H 16 -169.07 -70.44 REMARK 500 PRO H 41 93.88 -54.76 REMARK 500 ILE H 51 110.82 -160.68 REMARK 500 HIS H 61 -117.39 31.95 REMARK 500 ARG H 75 -9.17 70.26 REMARK 500 ASP H 99 78.33 53.23 REMARK 500 SER H 100B -11.57 -146.48 REMARK 500 GLN L 3 117.69 -168.98 REMARK 500 VAL L 15 109.30 -56.82 REMARK 500 GLN L 27 -95.23 -21.49 REMARK 500 ASP L 32 49.89 -89.27 REMARK 500 LEU L 47 -50.66 -120.48 REMARK 500 ALA L 51 -22.93 67.00 REMARK 500 HIS L 68 -116.78 58.47 REMARK 500 GLN L 79 -165.84 -105.64 REMARK 500 VAL L 83 95.24 -65.58 REMARK 500 ILE L 91 -106.51 29.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YDJ RELATED DB: PDB REMARK 900 RELATED ID: 4YDK RELATED DB: PDB REMARK 900 RELATED ID: 4YDL RELATED DB: PDB DBREF 4YDI G 44 123 UNP O55774 O55774_9HIV1 43 122 DBREF 4YDI G 199 317 UNP O55774 O55774_9HIV1 191 293 DBREF 4YDI G 324 492 UNP O55774 O55774_9HIV1 315 482 DBREF 4YDI H 1 218 PDB 4YDI 4YDI 1 218 DBREF 4YDI L 1 214 PDB 4YDI 4YDI 1 214 SEQADV 4YDI GLY G 124 UNP O55774 LINKER SEQADV 4YDI GLY G 198 UNP O55774 LINKER SEQADV 4YDI GLY G 318 UNP O55774 LINKER SEQADV 4YDI GLY G 319 UNP O55774 LINKER SEQADV 4YDI SER G 320 UNP O55774 LINKER SEQADV 4YDI GLY G 321 UNP O55774 LINKER SEQADV 4YDI SER G 322 UNP O55774 LINKER SEQADV 4YDI GLY G 323 UNP O55774 LINKER SEQRES 1 G 359 VAL TRP ARG ASP ALA ASP THR THR LEU PHE CYS ALA SER SEQRES 2 G 359 ASP ALA LYS ALA TYR GLU THR GLU LYS HIS ASN VAL TRP SEQRES 3 G 359 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 G 359 GLU ILE HIS LEU ASP ASN VAL THR GLU LYS PHE ASN MET SEQRES 5 G 359 TRP LYS ASN ASN MET VAL GLU GLN MET HIS THR ASP ILE SEQRES 6 G 359 ILE SER LEU TRP ASP GLN SER LEU LYS PRO CYS VAL LYS SEQRES 7 G 359 LEU THR GLY GLY SER ALA ILE THR GLN ALA CYS PRO LYS SEQRES 8 G 359 VAL SER PHE GLU PRO ILE PRO ILE HIS TYR CYS THR PRO SEQRES 9 G 359 ALA GLY PHE ALA ILE LEU LYS CYS LYS ASP GLU GLY PHE SEQRES 10 G 359 ASN GLY THR GLY LEU CYS LYS ASN VAL SER THR VAL GLN SEQRES 11 G 359 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 G 359 LEU LEU ASN GLY SER LEU ALA GLU LYS ASN ILE THR ILE SEQRES 13 G 359 ARG SER GLU ASN ILE THR ASN ASN ALA LYS ILE ILE ILE SEQRES 14 G 359 VAL GLN LEU VAL GLN PRO VAL THR ILE LYS CYS ILE ARG SEQRES 15 G 359 PRO ASN ASN GLY GLY SER GLY SER GLY GLY ASP ILE ARG SEQRES 16 G 359 GLN ALA HIS CYS ASN VAL THR ARG SER ARG TRP ASN LYS SEQRES 17 G 359 THR LEU GLN GLU VAL ALA GLU LYS LEU ARG THR TYR PHE SEQRES 18 G 359 GLY ASN LYS THR ILE ILE PHE ALA ASN SER SER GLY GLY SEQRES 19 G 359 ASP LEU GLU ILE THR THR HIS SER PHE ASN CYS GLY GLY SEQRES 20 G 359 GLU PHE PHE TYR CYS ASN THR SER GLY LEU PHE ASN SER SEQRES 21 G 359 THR TRP TYR VAL ASN SER THR TRP ASN ASP THR ASP SER SEQRES 22 G 359 THR GLN GLU SER ASN ASP THR ILE THR LEU PRO CYS ARG SEQRES 23 G 359 ILE LYS GLN ILE ILE ASN MET TRP GLN ARG ALA GLY GLN SEQRES 24 G 359 ALA MET TYR ALA PRO PRO ILE PRO GLY VAL ILE LYS CYS SEQRES 25 G 359 GLU SER ASN ILE THR GLY LEU LEU LEU THR ARG ASP GLY SEQRES 26 G 359 GLY LYS ASP ASN ASN VAL ASN GLU THR PHE ARG PRO GLY SEQRES 27 G 359 GLY GLY ASP MET ARG ASP ASN TRP ARG SER GLU LEU TYR SEQRES 28 G 359 LYS TYR LYS VAL VAL GLU ILE GLU SEQRES 1 H 227 SER GLN ARG LEU VAL GLN SER GLY PRO GLN VAL ARG LYS SEQRES 2 H 227 PRO GLY SER SER VAL ARG ILE SER CYS GLU THR SER GLY SEQRES 3 H 227 TYR THR PHE ASN ALA TYR ILE LEU HIS TRP PHE ARG GLN SEQRES 4 H 227 ALA PRO GLY ARG SER PHE GLU TRP MET GLY TRP ILE LYS SEQRES 5 H 227 PRO LYS PHE GLY ALA VAL ASN TYR ALA HIS SER PHE GLN SEQRES 6 H 227 GLY ARG ILE THR LEU THR ARG ASP ILE TYR ARG GLU THR SEQRES 7 H 227 ALA PHE LEU ASP LEU THR GLY LEU ARG PHE ASP ASP THR SEQRES 8 H 227 ALA VAL TYR TYR CYS ALA ARG ASP ARG LEU TYR ASP GLY SEQRES 9 H 227 SER SER TRP ARG LEU ASP PRO TRP GLY GLN GLY THR ARG SEQRES 10 H 227 VAL VAL VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 227 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 227 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 227 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 227 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 227 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 227 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 227 HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU SEQRES 18 H 227 PRO LYS SER CYS ASP LYS SEQRES 1 L 210 ASP ILE GLN MET THR GLN SER PRO SER SER LEU ALA VAL SEQRES 2 L 210 SER VAL GLY GLY ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 210 GLN GLY ILE GLY SER ASP LEU HIS TRP TYR GLN GLN LYS SEQRES 4 L 210 ARG GLY ARG PRO PRO LYS ILE LEU ILE HIS HIS ALA SER SEQRES 5 L 210 ALA ARG GLU GLU GLY VAL PRO SER ARG PHE GLY GLY SER SEQRES 6 L 210 GLY SER HIS THR PRO PHE ILE PHE THR ILE ASN ASP LEU SEQRES 7 L 210 GLN LEU ASP ASP VAL ALA THR TYR TYR CYS GLN VAL ILE SEQRES 8 L 210 GLU SER PHE GLY GLN GLY THR ARG LEU ASP ILE ASN ARG SEQRES 9 L 210 THR VAL ALA ALA PRO SER VAL PHE ILE PHE PRO PRO SER SEQRES 10 L 210 ASP GLU GLN LEU LYS SER GLY THR ALA SER VAL VAL CYS SEQRES 11 L 210 LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN SEQRES 12 L 210 TRP LYS VAL ASP ASN ALA LEU GLN SER GLY ASN SER GLN SEQRES 13 L 210 GLU SER VAL THR GLU GLN ASP SER LYS ASP SER THR TYR SEQRES 14 L 210 SER LEU SER SER THR LEU THR LEU SER LYS ALA ASP TYR SEQRES 15 L 210 GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL THR HIS GLN SEQRES 16 L 210 GLY LEU SER SER PRO VAL THR LYS SER PHE ASN ARG GLY SEQRES 17 L 210 GLU CYS HET NAG G 501 14 HET NAG G 502 14 HET NAG G 503 14 HET NAG G 504 14 HET NAG G 505 14 HET NAG G 506 14 HET NAG G 507 14 HET NAG G 508 14 HET NAG G 509 14 HET NAG G 510 14 HET NAG G 511 14 HET NAG G 512 14 HET SO4 G 513 5 HET SO4 H 301 5 HET SO4 H 302 5 HET EDO H 303 4 HET SO4 H 304 5 HET NAG L 301 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 4 NAG 13(C8 H15 N O6) FORMUL 16 SO4 4(O4 S 2-) FORMUL 19 EDO C2 H6 O2 FORMUL 22 HOH *19(H2 O) HELIX 1 AA1 GLU G 64 ALA G 73 1 10 HELIX 2 AA2 ASN G 98 LEU G 116 1 19 HELIX 3 AA3 ARG G 335 GLY G 354 1 20 HELIX 4 AA4 ASP G 368 THR G 373 1 6 HELIX 5 AA5 MET G 475 TYR G 484 1 10 HELIX 6 AA6 THR H 28 TYR H 32 5 5 HELIX 7 AA7 ALA H 60 GLN H 64 5 5 HELIX 8 AA8 ARG H 83 THR H 87 5 5 HELIX 9 AA9 SER H 156 ALA H 158 5 3 HELIX 10 AB1 PRO H 185 LEU H 189 5 5 HELIX 11 AB2 LYS H 201 ASN H 204 5 4 HELIX 12 AB3 SER L 121 LYS L 126 1 6 HELIX 13 AB4 LYS L 183 GLU L 187 1 5 SHEET 1 AA1 5 ARG G 46 ASP G 47 0 SHEET 2 AA1 5 TYR G 486 GLU G 490 -1 O GLU G 490 N ARG G 46 SHEET 3 AA1 5 PHE G 223 CYS G 228 -1 N LEU G 226 O LYS G 487 SHEET 4 AA1 5 VAL G 242 VAL G 245 -1 O SER G 243 N LYS G 227 SHEET 5 AA1 5 GLU G 83 HIS G 85 -1 N ILE G 84 O THR G 244 SHEET 1 AA2 3 CYS G 74 VAL G 75 0 SHEET 2 AA2 3 PHE G 53 SER G 56 1 N SER G 56 O VAL G 75 SHEET 3 AA2 3 ILE G 215 CYS G 218 -1 O HIS G 216 N ALA G 55 SHEET 1 AA3 2 GLU G 91 ASN G 94 0 SHEET 2 AA3 2 THR G 236 CYS G 239 -1 O CYS G 239 N GLU G 91 SHEET 1 AA4 4 ILE G 201 THR G 202 0 SHEET 2 AA4 4 VAL G 120 LEU G 122 -1 N LYS G 121 O ILE G 201 SHEET 3 AA4 4 GLN G 432 MET G 434 -1 O GLN G 432 N LEU G 122 SHEET 4 AA4 4 ILE G 423 ASN G 425 -1 N ILE G 424 O ALA G 433 SHEET 1 AA5 4 LEU G 259 LEU G 261 0 SHEET 2 AA5 4 SER G 447 ARG G 456 -1 O THR G 450 N LEU G 260 SHEET 3 AA5 4 ILE G 284 ARG G 298 -1 N ILE G 294 O SER G 447 SHEET 4 AA5 4 THR G 271 ARG G 273 -1 N THR G 271 O GLN G 287 SHEET 1 AA6 4 SER G 447 ARG G 456 0 SHEET 2 AA6 4 ASN G 465 PRO G 470 -1 O ARG G 469 N THR G 455 SHEET 3 AA6 4 THR G 357 PHE G 361 1 N ILE G 360 O PHE G 468 SHEET 4 AA6 4 SER G 393 TRP G 395 -1 O TRP G 395 N ILE G 359 SHEET 1 AA7 6 HIS G 374 CYS G 378 0 SHEET 2 AA7 6 GLU G 381 CYS G 385 -1 O CYS G 385 N HIS G 374 SHEET 3 AA7 6 THR G 413 ILE G 420 -1 O ARG G 419 N TYR G 384 SHEET 4 AA7 6 GLN G 328 THR G 334 -1 N CYS G 331 O LEU G 416 SHEET 5 AA7 6 ILE G 284 ARG G 298 -1 N LYS G 295 O ASN G 332 SHEET 6 AA7 6 ILE G 443 LYS G 444 -1 O ILE G 443 N ARG G 298 SHEET 1 AA8 4 ARG H 3 GLN H 6 0 SHEET 2 AA8 4 VAL H 18 SER H 25 -1 O GLU H 23 N VAL H 5 SHEET 3 AA8 4 THR H 77 LEU H 82 -1 O ALA H 78 N CYS H 22 SHEET 4 AA8 4 ILE H 67 ASP H 72 -1 N THR H 70 O PHE H 79 SHEET 1 AA9 6 GLN H 10 ARG H 12 0 SHEET 2 AA9 6 THR H 107 VAL H 111 1 O VAL H 110 N ARG H 12 SHEET 3 AA9 6 ALA H 88 ASP H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA9 6 LEU H 34 GLN H 39 -1 N PHE H 37 O TYR H 91 SHEET 5 AA9 6 PHE H 45 LYS H 52 -1 O MET H 48 N TRP H 36 SHEET 6 AA9 6 ALA H 56 ASN H 58 -1 O ALA H 56 N LYS H 52 SHEET 1 AB1 4 GLN H 10 ARG H 12 0 SHEET 2 AB1 4 THR H 107 VAL H 111 1 O VAL H 110 N ARG H 12 SHEET 3 AB1 4 ALA H 88 ASP H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AB1 4 LEU H 100E TRP H 103 -1 O PRO H 102 N ARG H 94 SHEET 1 AB2 4 SER H 120 PRO H 123 0 SHEET 2 AB2 4 GLY H 139 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AB2 4 TYR H 176 VAL H 182 -1 O TYR H 176 N TYR H 145 SHEET 4 AB2 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AB3 4 SER H 120 PRO H 123 0 SHEET 2 AB3 4 GLY H 139 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AB3 4 TYR H 176 VAL H 182 -1 O TYR H 176 N TYR H 145 SHEET 4 AB3 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AB4 3 THR H 151 TRP H 154 0 SHEET 2 AB4 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AB4 3 THR H 205 LYS H 210 -1 O THR H 205 N HIS H 200 SHEET 1 AB5 4 MET L 4 SER L 7 0 SHEET 2 AB5 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 AB5 4 PRO L 70 ILE L 75 -1 O PHE L 73 N ILE L 21 SHEET 4 AB5 4 PHE L 62 GLY L 66 -1 N GLY L 63 O THR L 74 SHEET 1 AB6 3 HIS L 34 GLN L 38 0 SHEET 2 AB6 3 THR L 85 VAL L 90 -1 O TYR L 87 N TYR L 36 SHEET 3 AB6 3 SER L 97 PHE L 98 -1 O SER L 97 N VAL L 90 SHEET 1 AB7 3 HIS L 34 GLN L 38 0 SHEET 2 AB7 3 THR L 85 VAL L 90 -1 O TYR L 87 N TYR L 36 SHEET 3 AB7 3 THR L 102 ARG L 103 -1 O THR L 102 N TYR L 86 SHEET 1 AB8 2 ILE L 48 HIS L 49 0 SHEET 2 AB8 2 ALA L 53 ARG L 54 -1 O ALA L 53 N HIS L 49 SHEET 1 AB9 4 SER L 114 PHE L 118 0 SHEET 2 AB9 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB9 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 AB9 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AC1 4 ALA L 153 GLN L 155 0 SHEET 2 AC1 4 LYS L 145 VAL L 150 -1 N TRP L 148 O GLN L 155 SHEET 3 AC1 4 VAL L 191 THR L 197 -1 O THR L 197 N LYS L 145 SHEET 4 AC1 4 VAL L 205 ASN L 210 -1 O LYS L 207 N CYS L 194 SSBOND 1 CYS G 54 CYS G 74 1555 1555 2.05 SSBOND 2 CYS G 119 CYS G 205 1555 1555 2.03 SSBOND 3 CYS G 218 CYS G 247 1555 1555 2.03 SSBOND 4 CYS G 228 CYS G 239 1555 1555 2.04 SSBOND 5 CYS G 296 CYS G 331 1555 1555 2.04 SSBOND 6 CYS G 378 CYS G 445 1555 1555 2.03 SSBOND 7 CYS G 385 CYS G 418 1555 1555 2.01 SSBOND 8 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 9 CYS H 140 CYS H 196 1555 1555 2.04 SSBOND 10 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 11 CYS L 134 CYS L 194 1555 1555 2.04 LINK ND2 ASN G 234 C1 NAG G 501 1555 1555 1.44 LINK ND2 ASN G 241 C1 NAG G 502 1555 1555 1.44 LINK ND2 ASN G 262 C1 NAG G 503 1555 1555 1.44 LINK ND2 ASN G 276 C1 NAG G 504 1555 1555 1.43 LINK ND2 ASN G 332 C1 NAG G 505 1555 1555 1.44 LINK ND2 ASN G 355 C1 NAG G 510 1555 1555 1.43 LINK ND2 ASN G 363 C1 NAG G 506 1555 1555 1.44 LINK ND2 ASN G 386 C1 NAG G 507 1555 1555 1.43 LINK ND2 ASN G 392 C1 NAG G 508 1555 1555 1.44 LINK ND2 ASN G 398 C1 NAG G 511 1555 1555 1.44 LINK ND2 ASN G 448 C1 NAG G 509 1555 1555 1.45 LINK ND2 ASN G 465 C1 NAG G 512 1555 1555 1.44 LINK ND2 ASN L 107 C1 NAG L 301 1555 1555 1.45 CISPEP 1 PHE H 146 PRO H 147 0 -5.93 CISPEP 2 GLU H 148 PRO H 149 0 -0.07 CISPEP 3 SER L 7 PRO L 8 0 -0.75 CISPEP 4 TYR L 140 PRO L 141 0 3.63 CRYST1 141.738 172.253 91.782 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007055 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010895 0.00000