data_4YDM # _entry.id 4YDM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4YDM WWPDB D_1000207272 # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 4YDN _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4YDM _pdbx_database_status.recvd_initial_deposition_date 2015-02-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Connelly, S.' 1 'Bradbury, N.C.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 137 _citation.language ? _citation.page_first 7404 _citation.page_last 7414 _citation.title 'A Fluorogenic Aryl Fluorosulfate for Intraorganellar Transthyretin Imaging in Living Cells and in Caenorhabditis elegans.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.5b03042 _citation.pdbx_database_id_PubMed 26051248 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Baranczak, A.' 1 primary 'Liu, Y.' 2 primary 'Connelly, S.' 3 primary 'Du, W.G.' 4 primary 'Greiner, E.R.' 5 primary 'Genereux, J.C.' 6 primary 'Wiseman, R.L.' 7 primary 'Eisele, Y.S.' 8 primary 'Bradbury, N.C.' 9 primary 'Dong, J.' 10 primary 'Noodleman, L.' 11 primary 'Sharpless, K.B.' 12 primary 'Wilson, I.A.' 13 primary 'Encalada, S.E.' 14 primary 'Kelly, J.W.' 15 # _cell.entry_id 4YDM _cell.length_a 42.709 _cell.length_b 85.420 _cell.length_c 63.537 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YDM _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Transthyretin 13856.417 2 ? ? 'UNP residues 21-147' ? 2 non-polymer syn '2,6-dichloro-4-[5-(3-hydroxyphenyl)-1,3,4-oxadiazol-2-yl]phenol' 323.131 2 ? ? ? ? 3 water nat water 18.015 197 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ATTR,Prealbumin,TBPA # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GPTGTGESKCPLMV(4AK)VLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTK SYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _entity_poly.pdbx_seq_one_letter_code_can ;GPTGTGESKCPLMVXVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWK ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 THR n 1 4 GLY n 1 5 THR n 1 6 GLY n 1 7 GLU n 1 8 SER n 1 9 LYS n 1 10 CYS n 1 11 PRO n 1 12 LEU n 1 13 MET n 1 14 VAL n 1 15 4AK n 1 16 VAL n 1 17 LEU n 1 18 ASP n 1 19 ALA n 1 20 VAL n 1 21 ARG n 1 22 GLY n 1 23 SER n 1 24 PRO n 1 25 ALA n 1 26 ILE n 1 27 ASN n 1 28 VAL n 1 29 ALA n 1 30 VAL n 1 31 HIS n 1 32 VAL n 1 33 PHE n 1 34 ARG n 1 35 LYS n 1 36 ALA n 1 37 ALA n 1 38 ASP n 1 39 ASP n 1 40 THR n 1 41 TRP n 1 42 GLU n 1 43 PRO n 1 44 PHE n 1 45 ALA n 1 46 SER n 1 47 GLY n 1 48 LYS n 1 49 THR n 1 50 SER n 1 51 GLU n 1 52 SER n 1 53 GLY n 1 54 GLU n 1 55 LEU n 1 56 HIS n 1 57 GLY n 1 58 LEU n 1 59 THR n 1 60 THR n 1 61 GLU n 1 62 GLU n 1 63 GLU n 1 64 PHE n 1 65 VAL n 1 66 GLU n 1 67 GLY n 1 68 ILE n 1 69 TYR n 1 70 LYS n 1 71 VAL n 1 72 GLU n 1 73 ILE n 1 74 ASP n 1 75 THR n 1 76 LYS n 1 77 SER n 1 78 TYR n 1 79 TRP n 1 80 LYS n 1 81 ALA n 1 82 LEU n 1 83 GLY n 1 84 ILE n 1 85 SER n 1 86 PRO n 1 87 PHE n 1 88 HIS n 1 89 GLU n 1 90 HIS n 1 91 ALA n 1 92 GLU n 1 93 VAL n 1 94 VAL n 1 95 PHE n 1 96 THR n 1 97 ALA n 1 98 ASN n 1 99 ASP n 1 100 SER n 1 101 GLY n 1 102 PRO n 1 103 ARG n 1 104 ARG n 1 105 TYR n 1 106 THR n 1 107 ILE n 1 108 ALA n 1 109 ALA n 1 110 LEU n 1 111 LEU n 1 112 SER n 1 113 PRO n 1 114 TYR n 1 115 SER n 1 116 TYR n 1 117 SER n 1 118 THR n 1 119 THR n 1 120 ALA n 1 121 VAL n 1 122 VAL n 1 123 THR n 1 124 ASN n 1 125 PRO n 1 126 LYS n 1 127 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 127 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TTR, PALB' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Epicurian gold' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pmmHA _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TTHY_HUMAN _struct_ref.pdbx_db_accession P02766 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWK ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _struct_ref.pdbx_align_begin 21 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4YDM A 1 ? 127 ? P02766 21 ? 147 ? 1 127 2 1 4YDM B 1 ? 127 ? P02766 21 ? 147 ? 1 127 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4AJ non-polymer . '2,6-dichloro-4-[5-(3-hydroxyphenyl)-1,3,4-oxadiazol-2-yl]phenol' ? 'C14 H8 Cl2 N2 O3' 323.131 4AK 'L-peptide linking' n N~6~-sulfo-L-lysine ? 'C6 H14 N2 O5 S' 226.251 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4YDM _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;The WT-TTR was concentrated to 4 mg/mL in 10 mM NaPi, 100 mM KCl, at pH 7.6 and co-crystallized at room temperature using the vapor-diffusion sitting drop method. Crystals were grown from 1.395 M sodium citrate, 3.5% v/v glycerol at pH 5.5. The crystals were frozen using a cryo-protectant solution of 1.395 M sodium citrate, pH 5.5, containing 10% v/v glycerol ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-01-08 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9797 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97945 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4YDM _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.250 _reflns.d_resolution_low 38.200 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all 64492 _reflns.number_obs 64492 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.300 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.029 _reflns.pdbx_netI_over_av_sigmaI 12.444 _reflns.pdbx_netI_over_sigmaI 25.500 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.032 _reflns.pdbx_Rpim_I_all 0.013 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 403587 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.250 1.320 ? 1.600 55367 ? ? 8993 ? 95.800 ? ? ? ? 0.498 ? ? ? ? ? ? ? ? 6.200 0.498 ? ? 3.400 ? 0.215 0 1 1 ? ? 1.320 1.400 ? 2.400 55113 ? ? 8787 ? 99.200 ? ? ? ? 0.318 ? ? ? ? ? ? ? ? 6.300 0.318 ? ? 5.300 ? 0.137 0 2 1 ? ? 1.400 1.490 ? 4.100 54384 ? ? 8355 ? 100.000 ? ? ? ? 0.188 ? ? ? ? ? ? ? ? 6.500 0.188 ? ? 8.700 ? 0.079 0 3 1 ? ? 1.490 1.610 ? 6.900 48336 ? ? 7758 ? 99.200 ? ? ? ? 0.111 ? ? ? ? ? ? ? ? 6.200 0.111 ? ? 13.900 ? 0.048 0 4 1 ? ? 1.610 1.770 ? 10.800 47656 ? ? 7220 ? 100.000 ? ? ? ? 0.070 ? ? ? ? ? ? ? ? 6.600 0.070 ? ? 21.500 ? 0.029 0 5 1 ? ? 1.770 1.980 ? 17.000 39577 ? ? 6500 ? 99.700 ? ? ? ? 0.042 ? ? ? ? ? ? ? ? 6.100 0.042 ? ? 33.400 ? 0.018 0 6 1 ? ? 1.980 2.280 ? 22.500 37006 ? ? 5799 ? 99.900 ? ? ? ? 0.030 ? ? ? ? ? ? ? ? 6.400 0.030 ? ? 50.200 ? 0.013 0 7 1 ? ? 2.280 2.800 ? 23.600 29192 ? ? 4936 ? 99.800 ? ? ? ? 0.026 ? ? ? ? ? ? ? ? 5.900 0.026 ? ? 55.800 ? 0.012 0 8 1 ? ? 2.800 3.950 ? 28.000 23798 ? ? 3890 ? 99.900 ? ? ? ? 0.021 ? ? ? ? ? ? ? ? 6.100 0.021 ? ? 72.100 ? 0.009 0 9 1 ? ? 3.950 38.200 ? 31.600 13158 ? ? 2254 ? 99.700 ? ? ? ? 0.016 ? ? ? ? ? ? ? ? 5.800 0.016 ? ? 74.900 ? 0.007 0 10 1 ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4YDM _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 61174 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 63.54 _refine.ls_d_res_high 1.25 _refine.ls_percent_reflns_obs 98.99 _refine.ls_R_factor_obs 0.14710 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.14575 _refine.ls_R_factor_R_free 0.17232 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 3263 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.977 _refine.correlation_coeff_Fo_to_Fc_free 0.970 _refine.B_iso_mean 20.421 _refine.aniso_B[1][1] -0.94 _refine.aniso_B[2][2] 0.85 _refine.aniso_B[3][3] 0.08 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 2qgb _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.042 _refine.pdbx_overall_ESU_R_Free 0.041 _refine.overall_SU_ML 0.026 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.338 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1793 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.number_atoms_solvent 197 _refine_hist.number_atoms_total 2032 _refine_hist.d_res_high 1.25 _refine_hist.d_res_low 63.54 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.020 ? 2042 'X-RAY DIFFRACTION' ? r_bond_other_d 0.000 0.020 ? 1859 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.738 1.985 ? 2822 'X-RAY DIFFRACTION' ? r_angle_other_deg 2.970 3.002 ? 4332 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.095 5.000 ? 274 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.893 24.091 ? 88 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.080 15.000 ? 314 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.002 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.101 0.200 ? 312 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.011 0.021 ? 2344 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.014 0.020 ? 460 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.086 1.627 ? 977 'X-RAY DIFFRACTION' ? r_mcbond_other 2.024 1.623 ? 976 'X-RAY DIFFRACTION' ? r_mcangle_it 2.692 2.444 ? 1233 'X-RAY DIFFRACTION' ? r_mcangle_other 2.707 2.447 ? 1234 'X-RAY DIFFRACTION' ? r_scbond_it 3.693 2.121 ? 1065 'X-RAY DIFFRACTION' ? r_scbond_other 3.692 2.120 ? 1066 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other 4.146 3.017 ? 1569 'X-RAY DIFFRACTION' ? r_long_range_B_refined 7.438 15.858 ? 2344 'X-RAY DIFFRACTION' ? r_long_range_B_other 7.437 15.858 ? 2345 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 6.560 3.000 ? 3901 'X-RAY DIFFRACTION' ? r_sphericity_free 59.370 5.000 ? 58 'X-RAY DIFFRACTION' ? r_sphericity_bonded 13.420 5.000 ? 3966 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.250 _refine_ls_shell.d_res_low 1.283 _refine_ls_shell.number_reflns_R_work 4141 _refine_ls_shell.R_factor_R_work 0.230 _refine_ls_shell.percent_reflns_obs 91.73 _refine_ls_shell.R_factor_R_free 0.218 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 219 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 4YDM _struct.title ;High resolution crystal structure of human transthyretin bound to ligand and conjugates of 3-(5-(3,5-dichloro-4-hydroxyphenyl)-1,3,4-oxadiazol-2-yl)phenyl fluorosulfate ; _struct.pdbx_descriptor Transthyretin _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4YDM _struct_keywords.text 'Transthyretin, hormone transport protein, Thyroxine, retinol, TRANSPORT PROTEIN' _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.details 'Tetramer confirmed by by size exclusion chromatography' _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.pdbx_formula_weight ? _struct_biol.pdbx_formula_weight_method ? _struct_biol.pdbx_aggregation_state ? _struct_biol.pdbx_assembly_method ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 74 ? LEU A 82 ? ASP A 74 LEU A 82 1 ? 9 HELX_P HELX_P2 AA2 ASP B 74 ? LEU B 82 ? ASP B 74 LEU B 82 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A VAL 14 C ? ? ? 1_555 A 4AK 15 N A ? A VAL 14 A 4AK 15 1_555 ? ? ? ? ? ? ? 1.503 ? covale2 covale both ? A VAL 14 C ? ? ? 1_555 A 4AK 15 N B ? A VAL 14 A 4AK 15 1_555 ? ? ? ? ? ? ? 1.509 ? covale3 covale both ? A 4AK 15 C A ? ? 1_555 A VAL 16 N ? ? A 4AK 15 A VAL 16 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale both ? A 4AK 15 C B ? ? 1_555 A VAL 16 N ? ? A 4AK 15 A VAL 16 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale both ? B VAL 14 C ? ? ? 1_555 B 4AK 15 N A ? B VAL 14 B 4AK 15 1_555 ? ? ? ? ? ? ? 1.318 ? covale6 covale both ? B VAL 14 C ? ? ? 1_555 B 4AK 15 N B ? B VAL 14 B 4AK 15 1_555 ? ? ? ? ? ? ? 1.330 ? covale7 covale both ? B 4AK 15 C A ? ? 1_555 B VAL 16 N ? ? B 4AK 15 B VAL 16 1_555 ? ? ? ? ? ? ? 1.282 ? covale8 covale both ? B 4AK 15 C B ? ? 1_555 B VAL 16 N ? ? B 4AK 15 B VAL 16 1_555 ? ? ? ? ? ? ? 1.247 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 8 ? AA2 ? 8 ? AA3 ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? parallel AA1 7 8 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? parallel AA2 7 8 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel AA3 6 7 ? anti-parallel AA3 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 23 ? PRO A 24 ? SER A 23 PRO A 24 AA1 2 LEU A 12 ? ASP A 18 ? LEU A 12 ASP A 18 AA1 3 ARG A 104 ? SER A 112 ? ARG A 104 SER A 112 AA1 4 SER A 115 ? THR A 123 ? SER A 115 THR A 123 AA1 5 SER B 115 ? THR B 123 ? SER B 115 THR B 123 AA1 6 ARG B 104 ? SER B 112 ? ARG B 104 SER B 112 AA1 7 LEU B 12 ? ASP B 18 ? LEU B 12 ASP B 18 AA1 8 SER B 23 ? PRO B 24 ? SER B 23 PRO B 24 AA2 1 GLU A 54 ? LEU A 55 ? GLU A 54 LEU A 55 AA2 2 LEU A 12 ? ASP A 18 ? LEU A 12 ASP A 18 AA2 3 ARG A 104 ? SER A 112 ? ARG A 104 SER A 112 AA2 4 SER A 115 ? THR A 123 ? SER A 115 THR A 123 AA2 5 SER B 115 ? THR B 123 ? SER B 115 THR B 123 AA2 6 ARG B 104 ? SER B 112 ? ARG B 104 SER B 112 AA2 7 LEU B 12 ? ASP B 18 ? LEU B 12 ASP B 18 AA2 8 GLU B 54 ? LEU B 55 ? GLU B 54 LEU B 55 AA3 1 TRP A 41 ? LYS A 48 ? TRP A 41 LYS A 48 AA3 2 ALA A 29 ? LYS A 35 ? ALA A 29 LYS A 35 AA3 3 GLY A 67 ? ILE A 73 ? GLY A 67 ILE A 73 AA3 4 HIS A 88 ? ALA A 97 ? HIS A 88 ALA A 97 AA3 5 HIS B 88 ? ALA B 97 ? HIS B 88 ALA B 97 AA3 6 GLY B 67 ? ILE B 73 ? GLY B 67 ILE B 73 AA3 7 ALA B 29 ? LYS B 35 ? ALA B 29 LYS B 35 AA3 8 TRP B 41 ? LYS B 48 ? TRP B 41 LYS B 48 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O SER A 23 ? O SER A 23 N ASP A 18 ? N ASP A 18 AA1 2 3 N LEU A 17 ? N LEU A 17 O LEU A 111 ? O LEU A 111 AA1 3 4 N SER A 112 ? N SER A 112 O SER A 115 ? O SER A 115 AA1 4 5 N TYR A 116 ? N TYR A 116 O THR B 118 ? O THR B 118 AA1 5 6 O SER B 115 ? O SER B 115 N SER B 112 ? N SER B 112 AA1 6 7 O ILE B 107 ? O ILE B 107 N MET B 13 ? N MET B 13 AA1 7 8 N ASP B 18 ? N ASP B 18 O SER B 23 ? O SER B 23 AA2 1 2 O LEU A 55 ? O LEU A 55 N VAL A 14 ? N VAL A 14 AA2 2 3 N LEU A 17 ? N LEU A 17 O LEU A 111 ? O LEU A 111 AA2 3 4 N SER A 112 ? N SER A 112 O SER A 115 ? O SER A 115 AA2 4 5 N TYR A 116 ? N TYR A 116 O THR B 118 ? O THR B 118 AA2 5 6 O SER B 115 ? O SER B 115 N SER B 112 ? N SER B 112 AA2 6 7 O ILE B 107 ? O ILE B 107 N MET B 13 ? N MET B 13 AA2 7 8 N VAL B 14 ? N VAL B 14 O LEU B 55 ? O LEU B 55 AA3 1 2 O ALA A 45 ? O ALA A 45 N VAL A 32 ? N VAL A 32 AA3 2 3 N HIS A 31 ? N HIS A 31 O GLU A 72 ? O GLU A 72 AA3 3 4 N ILE A 73 ? N ILE A 73 O ALA A 91 ? O ALA A 91 AA3 4 5 N GLU A 89 ? N GLU A 89 O VAL B 94 ? O VAL B 94 AA3 5 6 O ALA B 91 ? O ALA B 91 N ILE B 73 ? N ILE B 73 AA3 6 7 O GLU B 72 ? O GLU B 72 N HIS B 31 ? N HIS B 31 AA3 7 8 N VAL B 32 ? N VAL B 32 O ALA B 45 ? O ALA B 45 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 4AJ 201 ? 11 'binding site for residue 4AJ A 201' AC2 Software B 4AJ 201 ? 15 'binding site for residue 4AJ B 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 4AK A 15 ? 4AK A 15 . ? 2_555 ? 2 AC1 11 4AK A 15 ? 4AK A 15 . ? 1_555 ? 3 AC1 11 LEU A 17 ? LEU A 17 . ? 2_555 ? 4 AC1 11 LEU A 17 ? LEU A 17 . ? 1_555 ? 5 AC1 11 THR A 106 ? THR A 106 . ? 1_555 ? 6 AC1 11 ALA A 108 ? ALA A 108 . ? 2_555 ? 7 AC1 11 SER A 117 ? SER A 117 . ? 2_555 ? 8 AC1 11 SER A 117 ? SER A 117 . ? 1_555 ? 9 AC1 11 THR A 118 ? THR A 118 . ? 2_555 ? 10 AC1 11 THR A 118 ? THR A 118 . ? 1_555 ? 11 AC1 11 VAL A 121 ? VAL A 121 . ? 1_555 ? 12 AC2 15 4AK B 15 ? 4AK B 15 . ? 1_555 ? 13 AC2 15 4AK B 15 ? 4AK B 15 . ? 2_555 ? 14 AC2 15 LEU B 17 ? LEU B 17 . ? 1_555 ? 15 AC2 15 LEU B 17 ? LEU B 17 . ? 2_555 ? 16 AC2 15 THR B 106 ? THR B 106 . ? 2_555 ? 17 AC2 15 ALA B 108 ? ALA B 108 . ? 1_555 ? 18 AC2 15 LEU B 110 ? LEU B 110 . ? 2_555 ? 19 AC2 15 LEU B 110 ? LEU B 110 . ? 1_555 ? 20 AC2 15 SER B 117 ? SER B 117 . ? 2_555 ? 21 AC2 15 SER B 117 ? SER B 117 . ? 1_555 ? 22 AC2 15 THR B 118 ? THR B 118 . ? 2_555 ? 23 AC2 15 THR B 118 ? THR B 118 . ? 1_555 ? 24 AC2 15 THR B 119 ? THR B 119 . ? 2_555 ? 25 AC2 15 HOH F . ? HOH B 305 . ? 2_555 ? 26 AC2 15 HOH F . ? HOH B 305 . ? 1_555 ? # _atom_sites.entry_id 4YDM _atom_sites.fract_transf_matrix[1][1] 0.023414 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011707 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015739 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 PRO 2 2 ? ? ? A . n A 1 3 THR 3 3 ? ? ? A . n A 1 4 GLY 4 4 ? ? ? A . n A 1 5 THR 5 5 ? ? ? A . n A 1 6 GLY 6 6 ? ? ? A . n A 1 7 GLU 7 7 ? ? ? A . n A 1 8 SER 8 8 ? ? ? A . n A 1 9 LYS 9 9 ? ? ? A . n A 1 10 CYS 10 10 10 CYS CYS A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 MET 13 13 13 MET MET A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 4AK 15 15 15 4AK SYS A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 HIS 31 31 31 HIS HIS A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 TRP 41 41 41 TRP TRP A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 HIS 56 56 56 HIS HIS A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 TRP 79 79 79 TRP TRP A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 PHE 87 87 87 PHE PHE A . n A 1 88 HIS 88 88 88 HIS HIS A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 HIS 90 90 90 HIS HIS A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 ARG 104 104 104 ARG ARG A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 TYR 116 116 116 TYR TYR A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 THR 119 119 119 THR THR A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 THR 123 123 123 THR THR A . n A 1 124 ASN 124 124 124 ASN ASN A . n A 1 125 PRO 125 125 125 PRO PRO A . n A 1 126 LYS 126 126 ? ? ? A . n A 1 127 GLU 127 127 ? ? ? A . n B 1 1 GLY 1 1 ? ? ? B . n B 1 2 PRO 2 2 ? ? ? B . n B 1 3 THR 3 3 ? ? ? B . n B 1 4 GLY 4 4 ? ? ? B . n B 1 5 THR 5 5 ? ? ? B . n B 1 6 GLY 6 6 ? ? ? B . n B 1 7 GLU 7 7 ? ? ? B . n B 1 8 SER 8 8 ? ? ? B . n B 1 9 LYS 9 9 ? ? ? B . n B 1 10 CYS 10 10 10 CYS CYS B . n B 1 11 PRO 11 11 11 PRO PRO B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 MET 13 13 13 MET MET B . n B 1 14 VAL 14 14 14 VAL VAL B . n B 1 15 4AK 15 15 15 4AK SYS B . n B 1 16 VAL 16 16 16 VAL VAL B . n B 1 17 LEU 17 17 17 LEU LEU B . n B 1 18 ASP 18 18 18 ASP ASP B . n B 1 19 ALA 19 19 19 ALA ALA B . n B 1 20 VAL 20 20 20 VAL VAL B . n B 1 21 ARG 21 21 21 ARG ARG B . n B 1 22 GLY 22 22 22 GLY GLY B . n B 1 23 SER 23 23 23 SER SER B . n B 1 24 PRO 24 24 24 PRO PRO B . n B 1 25 ALA 25 25 25 ALA ALA B . n B 1 26 ILE 26 26 26 ILE ILE B . n B 1 27 ASN 27 27 27 ASN ASN B . n B 1 28 VAL 28 28 28 VAL VAL B . n B 1 29 ALA 29 29 29 ALA ALA B . n B 1 30 VAL 30 30 30 VAL VAL B . n B 1 31 HIS 31 31 31 HIS HIS B . n B 1 32 VAL 32 32 32 VAL VAL B . n B 1 33 PHE 33 33 33 PHE PHE B . n B 1 34 ARG 34 34 34 ARG ARG B . n B 1 35 LYS 35 35 35 LYS LYS B . n B 1 36 ALA 36 36 36 ALA ALA B . n B 1 37 ALA 37 37 37 ALA ALA B . n B 1 38 ASP 38 38 38 ASP ASP B . n B 1 39 ASP 39 39 39 ASP ASP B . n B 1 40 THR 40 40 40 THR THR B . n B 1 41 TRP 41 41 41 TRP TRP B . n B 1 42 GLU 42 42 42 GLU GLU B . n B 1 43 PRO 43 43 43 PRO PRO B . n B 1 44 PHE 44 44 44 PHE PHE B . n B 1 45 ALA 45 45 45 ALA ALA B . n B 1 46 SER 46 46 46 SER SER B . n B 1 47 GLY 47 47 47 GLY GLY B . n B 1 48 LYS 48 48 48 LYS LYS B . n B 1 49 THR 49 49 49 THR THR B . n B 1 50 SER 50 50 50 SER SER B . n B 1 51 GLU 51 51 51 GLU GLU B . n B 1 52 SER 52 52 52 SER SER B . n B 1 53 GLY 53 53 53 GLY GLY B . n B 1 54 GLU 54 54 54 GLU GLU B . n B 1 55 LEU 55 55 55 LEU LEU B . n B 1 56 HIS 56 56 56 HIS HIS B . n B 1 57 GLY 57 57 57 GLY GLY B . n B 1 58 LEU 58 58 58 LEU LEU B . n B 1 59 THR 59 59 59 THR THR B . n B 1 60 THR 60 60 60 THR THR B . n B 1 61 GLU 61 61 61 GLU GLU B . n B 1 62 GLU 62 62 62 GLU GLU B . n B 1 63 GLU 63 63 63 GLU GLU B . n B 1 64 PHE 64 64 64 PHE PHE B . n B 1 65 VAL 65 65 65 VAL VAL B . n B 1 66 GLU 66 66 66 GLU GLU B . n B 1 67 GLY 67 67 67 GLY GLY B . n B 1 68 ILE 68 68 68 ILE ILE B . n B 1 69 TYR 69 69 69 TYR TYR B . n B 1 70 LYS 70 70 70 LYS LYS B . n B 1 71 VAL 71 71 71 VAL VAL B . n B 1 72 GLU 72 72 72 GLU GLU B . n B 1 73 ILE 73 73 73 ILE ILE B . n B 1 74 ASP 74 74 74 ASP ASP B . n B 1 75 THR 75 75 75 THR THR B . n B 1 76 LYS 76 76 76 LYS LYS B . n B 1 77 SER 77 77 77 SER SER B . n B 1 78 TYR 78 78 78 TYR TYR B . n B 1 79 TRP 79 79 79 TRP TRP B . n B 1 80 LYS 80 80 80 LYS LYS B . n B 1 81 ALA 81 81 81 ALA ALA B . n B 1 82 LEU 82 82 82 LEU LEU B . n B 1 83 GLY 83 83 83 GLY GLY B . n B 1 84 ILE 84 84 84 ILE ILE B . n B 1 85 SER 85 85 85 SER SER B . n B 1 86 PRO 86 86 86 PRO PRO B . n B 1 87 PHE 87 87 87 PHE PHE B . n B 1 88 HIS 88 88 88 HIS HIS B . n B 1 89 GLU 89 89 89 GLU GLU B . n B 1 90 HIS 90 90 90 HIS HIS B . n B 1 91 ALA 91 91 91 ALA ALA B . n B 1 92 GLU 92 92 92 GLU GLU B . n B 1 93 VAL 93 93 93 VAL VAL B . n B 1 94 VAL 94 94 94 VAL VAL B . n B 1 95 PHE 95 95 95 PHE PHE B . n B 1 96 THR 96 96 96 THR THR B . n B 1 97 ALA 97 97 97 ALA ALA B . n B 1 98 ASN 98 98 98 ASN ASN B . n B 1 99 ASP 99 99 99 ASP ASP B . n B 1 100 SER 100 100 100 SER SER B . n B 1 101 GLY 101 101 101 GLY GLY B . n B 1 102 PRO 102 102 102 PRO PRO B . n B 1 103 ARG 103 103 103 ARG ARG B . n B 1 104 ARG 104 104 104 ARG ARG B . n B 1 105 TYR 105 105 105 TYR TYR B . n B 1 106 THR 106 106 106 THR THR B . n B 1 107 ILE 107 107 107 ILE ILE B . n B 1 108 ALA 108 108 108 ALA ALA B . n B 1 109 ALA 109 109 109 ALA ALA B . n B 1 110 LEU 110 110 110 LEU LEU B . n B 1 111 LEU 111 111 111 LEU LEU B . n B 1 112 SER 112 112 112 SER SER B . n B 1 113 PRO 113 113 113 PRO PRO B . n B 1 114 TYR 114 114 114 TYR TYR B . n B 1 115 SER 115 115 115 SER SER B . n B 1 116 TYR 116 116 116 TYR TYR B . n B 1 117 SER 117 117 117 SER SER B . n B 1 118 THR 118 118 118 THR THR B . n B 1 119 THR 119 119 119 THR THR B . n B 1 120 ALA 120 120 120 ALA ALA B . n B 1 121 VAL 121 121 121 VAL VAL B . n B 1 122 VAL 122 122 122 VAL VAL B . n B 1 123 THR 123 123 123 THR THR B . n B 1 124 ASN 124 124 124 ASN ASN B . n B 1 125 PRO 125 125 ? ? ? B . n B 1 126 LYS 126 126 ? ? ? B . n B 1 127 GLU 127 127 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4AJ 1 201 5 4AJ DRG A . D 2 4AJ 1 201 6 4AJ DRG B . E 3 HOH 1 301 498 HOH HOH A . E 3 HOH 2 302 118 HOH HOH A . E 3 HOH 3 303 311 HOH HOH A . E 3 HOH 4 304 26 HOH HOH A . E 3 HOH 5 305 67 HOH HOH A . E 3 HOH 6 306 500 HOH HOH A . E 3 HOH 7 307 54 HOH HOH A . E 3 HOH 8 308 137 HOH HOH A . E 3 HOH 9 309 488 HOH HOH A . E 3 HOH 10 310 158 HOH HOH A . E 3 HOH 11 311 174 HOH HOH A . E 3 HOH 12 312 247 HOH HOH A . E 3 HOH 13 313 30 HOH HOH A . E 3 HOH 14 314 62 HOH HOH A . E 3 HOH 15 315 5 HOH HOH A . E 3 HOH 16 316 61 HOH HOH A . E 3 HOH 17 317 107 HOH HOH A . E 3 HOH 18 318 7 HOH HOH A . E 3 HOH 19 319 120 HOH HOH A . E 3 HOH 20 320 24 HOH HOH A . E 3 HOH 21 321 102 HOH HOH A . E 3 HOH 22 322 59 HOH HOH A . E 3 HOH 23 323 190 HOH HOH A . E 3 HOH 24 324 23 HOH HOH A . E 3 HOH 25 325 143 HOH HOH A . E 3 HOH 26 326 14 HOH HOH A . E 3 HOH 27 327 9 HOH HOH A . E 3 HOH 28 328 444 HOH HOH A . E 3 HOH 29 329 28 HOH HOH A . E 3 HOH 30 330 22 HOH HOH A . E 3 HOH 31 331 494 HOH HOH A . E 3 HOH 32 332 31 HOH HOH A . E 3 HOH 33 333 42 HOH HOH A . E 3 HOH 34 334 33 HOH HOH A . E 3 HOH 35 335 69 HOH HOH A . E 3 HOH 36 336 244 HOH HOH A . E 3 HOH 37 337 76 HOH HOH A . E 3 HOH 38 338 220 HOH HOH A . E 3 HOH 39 339 83 HOH HOH A . E 3 HOH 40 340 10 HOH HOH A . E 3 HOH 41 341 11 HOH HOH A . E 3 HOH 42 342 8 HOH HOH A . E 3 HOH 43 343 37 HOH HOH A . E 3 HOH 44 344 12 HOH HOH A . E 3 HOH 45 345 134 HOH HOH A . E 3 HOH 46 346 41 HOH HOH A . E 3 HOH 47 347 1 HOH HOH A . E 3 HOH 48 348 57 HOH HOH A . E 3 HOH 49 349 52 HOH HOH A . E 3 HOH 50 350 489 HOH HOH A . E 3 HOH 51 351 64 HOH HOH A . E 3 HOH 52 352 18 HOH HOH A . E 3 HOH 53 353 25 HOH HOH A . E 3 HOH 54 354 73 HOH HOH A . E 3 HOH 55 355 128 HOH HOH A . E 3 HOH 56 356 239 HOH HOH A . E 3 HOH 57 357 117 HOH HOH A . E 3 HOH 58 358 35 HOH HOH A . E 3 HOH 59 359 16 HOH HOH A . E 3 HOH 60 360 284 HOH HOH A . E 3 HOH 61 361 48 HOH HOH A . E 3 HOH 62 362 39 HOH HOH A . E 3 HOH 63 363 27 HOH HOH A . E 3 HOH 64 364 44 HOH HOH A . E 3 HOH 65 365 250 HOH HOH A . E 3 HOH 66 366 131 HOH HOH A . E 3 HOH 67 367 71 HOH HOH A . E 3 HOH 68 368 175 HOH HOH A . E 3 HOH 69 369 383 HOH HOH A . E 3 HOH 70 370 280 HOH HOH A . E 3 HOH 71 371 330 HOH HOH A . E 3 HOH 72 372 88 HOH HOH A . E 3 HOH 73 373 339 HOH HOH A . E 3 HOH 74 374 101 HOH HOH A . E 3 HOH 75 375 211 HOH HOH A . E 3 HOH 76 376 231 HOH HOH A . E 3 HOH 77 377 495 HOH HOH A . E 3 HOH 78 378 162 HOH HOH A . E 3 HOH 79 379 84 HOH HOH A . E 3 HOH 80 380 225 HOH HOH A . E 3 HOH 81 381 369 HOH HOH A . E 3 HOH 82 382 92 HOH HOH A . E 3 HOH 83 383 55 HOH HOH A . E 3 HOH 84 384 116 HOH HOH A . E 3 HOH 85 385 256 HOH HOH A . E 3 HOH 86 386 443 HOH HOH A . E 3 HOH 87 387 445 HOH HOH A . E 3 HOH 88 388 395 HOH HOH A . E 3 HOH 89 389 430 HOH HOH A . E 3 HOH 90 390 315 HOH HOH A . E 3 HOH 91 391 198 HOH HOH A . E 3 HOH 92 392 270 HOH HOH A . E 3 HOH 93 393 111 HOH HOH A . E 3 HOH 94 394 155 HOH HOH A . E 3 HOH 95 395 453 HOH HOH A . E 3 HOH 96 396 271 HOH HOH A . E 3 HOH 97 397 497 HOH HOH A . F 3 HOH 1 301 262 HOH HOH B . F 3 HOH 2 302 135 HOH HOH B . F 3 HOH 3 303 93 HOH HOH B . F 3 HOH 4 304 95 HOH HOH B . F 3 HOH 5 305 499 HOH HOH B . F 3 HOH 6 306 114 HOH HOH B . F 3 HOH 7 307 65 HOH HOH B . F 3 HOH 8 308 235 HOH HOH B . F 3 HOH 9 309 164 HOH HOH B . F 3 HOH 10 310 43 HOH HOH B . F 3 HOH 11 311 297 HOH HOH B . F 3 HOH 12 312 47 HOH HOH B . F 3 HOH 13 313 60 HOH HOH B . F 3 HOH 14 314 75 HOH HOH B . F 3 HOH 15 315 2 HOH HOH B . F 3 HOH 16 316 6 HOH HOH B . F 3 HOH 17 317 96 HOH HOH B . F 3 HOH 18 318 20 HOH HOH B . F 3 HOH 19 319 103 HOH HOH B . F 3 HOH 20 320 207 HOH HOH B . F 3 HOH 21 321 56 HOH HOH B . F 3 HOH 22 322 178 HOH HOH B . F 3 HOH 23 323 254 HOH HOH B . F 3 HOH 24 324 46 HOH HOH B . F 3 HOH 25 325 51 HOH HOH B . F 3 HOH 26 326 21 HOH HOH B . F 3 HOH 27 327 3 HOH HOH B . F 3 HOH 28 328 173 HOH HOH B . F 3 HOH 29 329 49 HOH HOH B . F 3 HOH 30 330 82 HOH HOH B . F 3 HOH 31 331 13 HOH HOH B . F 3 HOH 32 332 58 HOH HOH B . F 3 HOH 33 333 216 HOH HOH B . F 3 HOH 34 334 90 HOH HOH B . F 3 HOH 35 335 490 HOH HOH B . F 3 HOH 36 336 191 HOH HOH B . F 3 HOH 37 337 77 HOH HOH B . F 3 HOH 38 338 4 HOH HOH B . F 3 HOH 39 339 45 HOH HOH B . F 3 HOH 40 340 40 HOH HOH B . F 3 HOH 41 341 63 HOH HOH B . F 3 HOH 42 342 133 HOH HOH B . F 3 HOH 43 343 15 HOH HOH B . F 3 HOH 44 344 17 HOH HOH B . F 3 HOH 45 345 72 HOH HOH B . F 3 HOH 46 346 145 HOH HOH B . F 3 HOH 47 347 68 HOH HOH B . F 3 HOH 48 348 36 HOH HOH B . F 3 HOH 49 349 267 HOH HOH B . F 3 HOH 50 350 492 HOH HOH B . F 3 HOH 51 351 34 HOH HOH B . F 3 HOH 52 352 208 HOH HOH B . F 3 HOH 53 353 89 HOH HOH B . F 3 HOH 54 354 493 HOH HOH B . F 3 HOH 55 355 70 HOH HOH B . F 3 HOH 56 356 38 HOH HOH B . F 3 HOH 57 357 19 HOH HOH B . F 3 HOH 58 358 142 HOH HOH B . F 3 HOH 59 359 121 HOH HOH B . F 3 HOH 60 360 195 HOH HOH B . F 3 HOH 61 361 81 HOH HOH B . F 3 HOH 62 362 153 HOH HOH B . F 3 HOH 63 363 318 HOH HOH B . F 3 HOH 64 364 168 HOH HOH B . F 3 HOH 65 365 385 HOH HOH B . F 3 HOH 66 366 80 HOH HOH B . F 3 HOH 67 367 491 HOH HOH B . F 3 HOH 68 368 91 HOH HOH B . F 3 HOH 69 369 159 HOH HOH B . F 3 HOH 70 370 321 HOH HOH B . F 3 HOH 71 371 136 HOH HOH B . F 3 HOH 72 372 165 HOH HOH B . F 3 HOH 73 373 53 HOH HOH B . F 3 HOH 74 374 66 HOH HOH B . F 3 HOH 75 375 74 HOH HOH B . F 3 HOH 76 376 126 HOH HOH B . F 3 HOH 77 377 204 HOH HOH B . F 3 HOH 78 378 105 HOH HOH B . F 3 HOH 79 379 32 HOH HOH B . F 3 HOH 80 380 125 HOH HOH B . F 3 HOH 81 381 236 HOH HOH B . F 3 HOH 82 382 381 HOH HOH B . F 3 HOH 83 383 99 HOH HOH B . F 3 HOH 84 384 441 HOH HOH B . F 3 HOH 85 385 189 HOH HOH B . F 3 HOH 86 386 129 HOH HOH B . F 3 HOH 87 387 289 HOH HOH B . F 3 HOH 88 388 181 HOH HOH B . F 3 HOH 89 389 115 HOH HOH B . F 3 HOH 90 390 176 HOH HOH B . F 3 HOH 91 391 185 HOH HOH B . F 3 HOH 92 392 98 HOH HOH B . F 3 HOH 93 393 457 HOH HOH B . F 3 HOH 94 394 160 HOH HOH B . F 3 HOH 95 395 112 HOH HOH B . F 3 HOH 96 396 447 HOH HOH B . F 3 HOH 97 397 481 HOH HOH B . F 3 HOH 98 398 152 HOH HOH B . F 3 HOH 99 399 188 HOH HOH B . F 3 HOH 100 400 212 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 4AK 15 A 4AK 15 ? LYS 'modified residue' 2 B 4AK 15 B 4AK 15 ? LYS 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6330 ? 1 MORE 15.3 ? 1 'SSA (A^2)' 19210 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A 4AJ 201 ? C 4AJ . 2 1 A 4AJ 201 ? C 4AJ . 3 1 A 4AJ 201 ? C 4AJ . 4 1 A 4AJ 201 ? C 4AJ . 5 1 B 4AJ 201 ? D 4AJ . 6 1 B 4AJ 201 ? D 4AJ . 7 1 B HOH 305 ? F HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-07-15 2 'Structure model' 1 1 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Author supporting evidence' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' entity_src_gen 2 2 'Structure model' pdbx_struct_assembly_auth_evidence 3 2 'Structure model' pdbx_struct_oper_list 4 2 'Structure model' pdbx_validate_close_contact # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_entity_src_gen.pdbx_alt_source_flag' 2 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0049 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? 3.3.15 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 3 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLU 92 ? ? OE1 B GLU 92 ? ? 2.00 2 1 O A HOH 362 ? ? O A HOH 394 ? ? 2.13 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ASP _pdbx_validate_symm_contact.auth_seq_id_1 99 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 394 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_545 _pdbx_validate_symm_contact.dist 2.10 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A VAL 14 ? ? N A 4AK 15 ? A 1.503 1.336 0.167 0.023 Y 2 1 C A VAL 14 ? ? N A 4AK 15 ? B 1.509 1.336 0.173 0.023 Y # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 PRO _pdbx_validate_rmsd_angle.auth_seq_id_1 102 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 102 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 102 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 92.42 _pdbx_validate_rmsd_angle.angle_target_value 111.70 _pdbx_validate_rmsd_angle.angle_deviation -19.28 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.10 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 397 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.87 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A PRO 2 ? A PRO 2 3 1 Y 1 A THR 3 ? A THR 3 4 1 Y 1 A GLY 4 ? A GLY 4 5 1 Y 1 A THR 5 ? A THR 5 6 1 Y 1 A GLY 6 ? A GLY 6 7 1 Y 1 A GLU 7 ? A GLU 7 8 1 Y 1 A SER 8 ? A SER 8 9 1 Y 1 A LYS 9 ? A LYS 9 10 1 Y 1 A LYS 126 ? A LYS 126 11 1 Y 1 A GLU 127 ? A GLU 127 12 1 Y 1 B GLY 1 ? B GLY 1 13 1 Y 1 B PRO 2 ? B PRO 2 14 1 Y 1 B THR 3 ? B THR 3 15 1 Y 1 B GLY 4 ? B GLY 4 16 1 Y 1 B THR 5 ? B THR 5 17 1 Y 1 B GLY 6 ? B GLY 6 18 1 Y 1 B GLU 7 ? B GLU 7 19 1 Y 1 B SER 8 ? B SER 8 20 1 Y 1 B LYS 9 ? B LYS 9 21 1 Y 1 B PRO 125 ? B PRO 125 22 1 Y 1 B LYS 126 ? B LYS 126 23 1 Y 1 B GLU 127 ? B GLU 127 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2,6-dichloro-4-[5-(3-hydroxyphenyl)-1,3,4-oxadiazol-2-yl]phenol' 4AJ 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #