HEADER METAL TRANSPORT 23-FEB-15 4YDX TITLE CRYSTAL STRUCTURE OF CISPLATIN BOUND TO A HUMAN COPPER CHAPERONE TITLE 2 (MONOMER) - NEW REFINEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER TRANSPORT PROTEIN ATOX1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: METAL TRANSPORT PROTEIN ATX1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ATOX1, HAH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS RE-REFINEMENT OF 3IWL, CISPLATIN, PLATINUM, METAL-BINDING, METAL KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR I.G.SHABALIN,A.K.BOAL,Z.DAUTER,M.JASKOLSKI,W.MINOR,A.C.ROSENZWEIG, AUTHOR 2 A.WLODAWER REVDAT 8 27-SEP-23 4YDX 1 REMARK REVDAT 7 13-APR-22 4YDX 1 AUTHOR JRNL REVDAT 6 25-DEC-19 4YDX 1 REMARK REVDAT 5 06-SEP-17 4YDX 1 REMARK REVDAT 4 16-SEP-15 4YDX 1 JRNL REVDAT 3 09-SEP-15 4YDX 1 JRNL REMARK REVDAT 2 08-JUL-15 4YDX 1 JRNL REVDAT 1 04-MAR-15 4YDX 0 JRNL AUTH I.SHABALIN,Z.DAUTER,M.JASKOLSKI,W.MINOR,A.WLODAWER JRNL TITL CRYSTALLOGRAPHY AND CHEMISTRY SHOULD ALWAYS GO TOGETHER: A JRNL TITL 2 CAUTIONARY TALE OF PROTEIN COMPLEXES WITH CISPLATIN AND JRNL TITL 3 CARBOPLATIN. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 1965 2015 JRNL REFN ESSN 1399-0047 JRNL PMID 26327386 JRNL DOI 10.1107/S139900471500629X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.K.BOAL,A.C.ROSENZWEIG REMARK 1 TITL CRYSTAL STRUCTURES OF CISPLATIN BOUND TO A HUMAN COPPER REMARK 1 TITL 2 CHAPERONE. REMARK 1 REF J.AM.CHEM.SOC. V. 131 14196 2009 REMARK 1 REFN ESSN 1520-5126 REMARK 1 PMID 19807176 REMARK 1 DOI 10.1021/JA906363T REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 12057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 621 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 858 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.2330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 503 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.30000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.348 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 548 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 530 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 732 ; 1.515 ; 2.030 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1235 ; 0.913 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 70 ; 5.603 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 19 ;36.156 ;25.263 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 103 ;11.505 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;11.240 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 85 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 590 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 100 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 271 ; 0.487 ; 0.990 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 270 ; 0.462 ; 0.985 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 338 ; 0.812 ; 1.478 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1 ; 1.572 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2 ;14.689 ; 0.100 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 6 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2040 8.9400 15.5150 REMARK 3 T TENSOR REMARK 3 T11: 0.0871 T22: 0.0782 REMARK 3 T33: 0.0345 T12: -0.0158 REMARK 3 T13: 0.0131 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 16.3261 L22: 28.5948 REMARK 3 L33: 5.6487 L12: 13.1683 REMARK 3 L13: 2.3184 L23: 8.0526 REMARK 3 S TENSOR REMARK 3 S11: -0.3019 S12: 0.3017 S13: -0.3642 REMARK 3 S21: -0.7205 S22: 0.1647 S23: 0.2758 REMARK 3 S31: -0.0845 S32: -0.2713 S33: 0.1371 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): 34.1740 22.3680 14.3950 REMARK 3 T TENSOR REMARK 3 T11: 0.0938 T22: 0.0283 REMARK 3 T33: 0.0739 T12: -0.0300 REMARK 3 T13: -0.0101 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 7.1633 L22: 12.0904 REMARK 3 L33: 8.2208 L12: 5.4498 REMARK 3 L13: -3.2741 L23: -6.6283 REMARK 3 S TENSOR REMARK 3 S11: 0.1771 S12: -0.1009 S13: 0.3054 REMARK 3 S21: 0.4787 S22: -0.1529 S23: 0.0426 REMARK 3 S31: -0.7137 S32: 0.0919 S33: -0.0243 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): 37.5650 18.4980 7.2750 REMARK 3 T TENSOR REMARK 3 T11: 0.0512 T22: 0.0417 REMARK 3 T33: 0.0548 T12: -0.0422 REMARK 3 T13: -0.0161 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 4.9609 L22: 8.7142 REMARK 3 L33: 4.4630 L12: 0.9781 REMARK 3 L13: 0.2836 L23: 0.3140 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: 0.1165 S13: 0.1892 REMARK 3 S21: -0.1015 S22: 0.0347 S23: -0.1305 REMARK 3 S31: -0.2066 S32: 0.2775 S33: 0.0270 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 28 REMARK 3 ORIGIN FOR THE GROUP (A): 38.4560 8.9960 7.1670 REMARK 3 T TENSOR REMARK 3 T11: 0.0221 T22: 0.0523 REMARK 3 T33: 0.0692 T12: 0.0041 REMARK 3 T13: 0.0014 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 5.7675 L22: 11.0049 REMARK 3 L33: 5.2127 L12: -0.4868 REMARK 3 L13: 0.1573 L23: -0.2493 REMARK 3 S TENSOR REMARK 3 S11: 0.0258 S12: 0.1757 S13: -0.0276 REMARK 3 S21: -0.2806 S22: -0.1991 S23: -0.3991 REMARK 3 S31: -0.0675 S32: 0.4126 S33: 0.1734 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 38 REMARK 3 ORIGIN FOR THE GROUP (A): 28.3320 16.7960 8.9090 REMARK 3 T TENSOR REMARK 3 T11: 0.0639 T22: 0.0357 REMARK 3 T33: 0.0335 T12: -0.0060 REMARK 3 T13: 0.0022 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 3.3019 L22: 11.8672 REMARK 3 L33: 5.1414 L12: -1.3413 REMARK 3 L13: -0.2907 L23: 3.9299 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: 0.0413 S13: -0.0117 REMARK 3 S21: -0.0806 S22: -0.1442 S23: 0.4664 REMARK 3 S31: -0.2580 S32: -0.1384 S33: 0.1505 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): 26.8170 8.9220 11.9620 REMARK 3 T TENSOR REMARK 3 T11: 0.0801 T22: 0.0590 REMARK 3 T33: 0.0843 T12: -0.0088 REMARK 3 T13: 0.0256 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 2.8529 L22: 41.2430 REMARK 3 L33: 1.2595 L12: 1.4239 REMARK 3 L13: 0.3265 L23: 2.7413 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: -0.1106 S13: -0.2502 REMARK 3 S21: 0.2833 S22: -0.1750 S23: 0.9108 REMARK 3 S31: -0.0761 S32: -0.1406 S33: 0.1634 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 54 REMARK 3 ORIGIN FOR THE GROUP (A): 33.9830 5.3800 17.7500 REMARK 3 T TENSOR REMARK 3 T11: 0.0764 T22: 0.0799 REMARK 3 T33: 0.1020 T12: 0.0183 REMARK 3 T13: -0.0034 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 4.7497 L22: 5.9629 REMARK 3 L33: 3.0868 L12: 3.4870 REMARK 3 L13: -2.1478 L23: -0.6563 REMARK 3 S TENSOR REMARK 3 S11: -0.1407 S12: -0.2596 S13: -0.2855 REMARK 3 S21: 0.1627 S22: 0.0132 S23: -0.1560 REMARK 3 S31: 0.0695 S32: 0.1340 S33: 0.1275 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 55 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): 39.5850 14.6600 16.5370 REMARK 3 T TENSOR REMARK 3 T11: 0.0392 T22: 0.0779 REMARK 3 T33: 0.0651 T12: -0.0350 REMARK 3 T13: -0.0287 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 11.6405 L22: 11.4090 REMARK 3 L33: 6.8890 L12: 7.3708 REMARK 3 L13: 0.7059 L23: 1.1265 REMARK 3 S TENSOR REMARK 3 S11: -0.0354 S12: -0.2956 S13: -0.0774 REMARK 3 S21: 0.1227 S22: -0.0360 S23: -0.2943 REMARK 3 S31: -0.1643 S32: 0.2322 S33: 0.0713 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): 26.9290 12.8770 19.9680 REMARK 3 T TENSOR REMARK 3 T11: 0.0605 T22: 0.0705 REMARK 3 T33: 0.0294 T12: 0.0051 REMARK 3 T13: -0.0050 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 17.2386 L22: 8.3170 REMARK 3 L33: 4.4270 L12: 8.1795 REMARK 3 L13: -4.3023 L23: -2.8238 REMARK 3 S TENSOR REMARK 3 S11: -0.0998 S12: 0.2273 S13: 0.0880 REMARK 3 S21: 0.1551 S22: 0.2748 S23: 0.2607 REMARK 3 S31: -0.1825 S32: -0.2319 S33: -0.1751 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 U VALUES : WITH TLS ADDED HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 3 THIS DEPOSIT RESULTED FROM AN ANALYSIS OF A NUMBER OF PDB ENTRIES REMARK 3 THAT CONTAIN CISPLATIN OR CARBOPLATIN IN COMPLEX WITH PROTEINS, REMARK 3 CONDUCTED IN THE SPIRIT OF THE TERWILLIGER-BRICOGNE MOTTO REMARK 3 ADVOCATING CONTINUOUS IMPROVEMENT OF THE MACROMOLECULAR MODELS IN REMARK 3 THE PDB (ACTA CRYST. D70, 2533, 2014). THE STRUCTURE FACTORS AND REMARK 3 COORDINATES, ORIGINALLY DEPOSITED AS 3IWL (BOAL, A. K. & REMARK 3 ROSENZWEIG, A. C. 2009. J. AM. CHEM. SOC. 131, 14196-14197), WERE REMARK 3 USED AS THE STARTING POINT FOR AN INDEPENDENT RE-REFINEMENT. THE REMARK 3 NEW MODEL INCLUDES SOME REINTERPRETATION OF THE LIGANDS, HAS LOWER REMARK 3 R FACTORS, AND IMPROVED STATISTICS DESCRIBING THE AGREEMENT WITH REMARK 3 THE EXPERIMENTAL DATA. REMARK 4 REMARK 4 4YDX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90511 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13182 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 19.50 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : 0.11800 REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 0.50300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHASER, SHARP REMARK 200 STARTING MODEL: 3IWL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M LITHIUM SULFATE, 0.1M MES, PH 6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.05200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.52600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 18.52600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.05200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 216 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 236 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 25 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 11 -61.22 -95.89 REMARK 500 CYS A 12 -155.88 -132.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PT A 101 PT REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 12 N REMARK 620 2 CYS A 12 SG 82.2 REMARK 620 3 CYS A 15 SG 99.6 172.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PT A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TCE A 103 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IWL RELATED DB: PDB REMARK 900 THE CURRENT DEPOSIT IS RE-REFINEMENT OF 3IWL DBREF 4YDX A 2 68 UNP O00244 ATOX1_HUMAN 2 68 SEQRES 1 A 67 PRO LYS HIS GLU PHE SER VAL ASP MET THR CYS GLY GLY SEQRES 2 A 67 CYS ALA GLU ALA VAL SER ARG VAL LEU ASN LYS LEU GLY SEQRES 3 A 67 GLY VAL LYS TYR ASP ILE ASP LEU PRO ASN LYS LYS VAL SEQRES 4 A 67 CYS ILE GLU SER GLU HIS SER MET ASP THR LEU LEU ALA SEQRES 5 A 67 THR LEU LYS LYS THR GLY LYS THR VAL SER TYR LEU GLY SEQRES 6 A 67 LEU GLU HET PT A 101 1 HET SO4 A 102 5 HET TCE A 103 16 HETNAM PT PLATINUM (II) ION HETNAM SO4 SULFATE ION HETNAM TCE 3,3',3''-PHOSPHANETRIYLTRIPROPANOIC ACID HETSYN TCE 3-[BIS(2-CARBOXYETHYL)PHOSPHANYL]PROPANOIC ACID FORMUL 2 PT PT 2+ FORMUL 3 SO4 O4 S 2- FORMUL 4 TCE C9 H15 O6 P FORMUL 5 HOH *94(H2 O) HELIX 1 AA1 CYS A 12 GLY A 27 1 16 HELIX 2 AA2 SER A 47 LYS A 57 1 11 SHEET 1 AA1 4 LYS A 30 ASP A 34 0 SHEET 2 AA1 4 LYS A 39 GLU A 43 -1 O GLU A 43 N LYS A 30 SHEET 3 AA1 4 LYS A 3 VAL A 8 -1 N HIS A 4 O ILE A 42 SHEET 4 AA1 4 VAL A 62 LEU A 67 -1 O LEU A 65 N GLU A 5 LINK N CYS A 12 PT PT A 101 1555 1555 2.06 LINK SG CYS A 12 PT PT A 101 1555 1555 2.29 LINK SG CYS A 15 PT PT A 101 1555 1555 2.34 SITE 1 AC1 4 THR A 11 CYS A 12 CYS A 15 TCE A 103 SITE 1 AC2 6 GLY A 27 GLY A 28 HIS A 46 SER A 47 SITE 2 AC2 6 THR A 50 HOH A 219 SITE 1 AC3 9 CYS A 12 GLY A 14 CYS A 15 LYS A 60 SITE 2 AC3 9 PT A 101 HOH A 210 HOH A 264 HOH A 266 SITE 3 AC3 9 HOH A 269 CRYST1 54.070 54.070 55.578 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018495 0.010678 0.000000 0.00000 SCALE2 0.000000 0.021356 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017993 0.00000