HEADER HYDROLASE 24-FEB-15 4YER TITLE CRYSTAL STRUCTURE OF AN ABC TRANSPORTER ATP-BINDING PROTEIN (TM_1403) TITLE 2 FROM THERMOTOGA MARITIMA MSB8 AT 2.35 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER ATP-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ABC-TYPE MULTIDRUG TRANSPORT SYSTEM,ATPASE COMPONENT, COMPND 5 ANTIBIOTIC ABC TRANSPORTER,ATP-BINDING PROTEIN,PUTATIVE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 5 GENE: TM_1403, THEMA_07300, TMARI_1410; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MH4TEVA KEYWDS PF00005 FAMILY PROTEIN, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE KEYWDS 2 HYDROLASES FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 4YER 1 SEQADV REVDAT 5 25-DEC-19 4YER 1 REMARK REVDAT 4 24-JAN-18 4YER 1 JRNL REVDAT 3 01-NOV-17 4YER 1 REMARK REVDAT 2 20-SEP-17 4YER 1 SOURCE REMARK REVDAT 1 11-MAR-15 4YER 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF AN ABC TRANSPORTER ATP-BINDING PROTEIN JRNL TITL 2 (TM_1403) FROM THERMOTOGA MARITIMA MSB8 AT 2.35 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1481 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.43 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2807 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2138 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2663 REMARK 3 BIN R VALUE (WORKING SET) : 0.2115 REMARK 3 BIN FREE R VALUE : 0.2557 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.13 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 144 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4310 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 60 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.33100 REMARK 3 B22 (A**2) : 5.36420 REMARK 3 B33 (A**2) : -7.69510 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.305 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 8648 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 15665 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2427 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 95 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1303 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 8648 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 606 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 9117 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 0.96 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.36 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.95 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1-313 } REMARK 3 ORIGIN FOR THE GROUP (A): 11.7363 -19.1565 80.0341 REMARK 3 T TENSOR REMARK 3 T11: -0.2296 T22: -0.2359 REMARK 3 T33: 0.0628 T12: -0.0150 REMARK 3 T13: -0.0474 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.9818 L22: 1.6793 REMARK 3 L33: 1.9414 L12: -0.0670 REMARK 3 L13: 0.0071 L23: 0.3962 REMARK 3 S TENSOR REMARK 3 S11: 0.0203 S12: 0.0559 S13: -0.1155 REMARK 3 S21: 0.0341 S22: 0.0163 S23: -0.1587 REMARK 3 S31: 0.2838 S32: -0.0083 S33: -0.0367 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|1-313 } REMARK 3 ORIGIN FOR THE GROUP (A): -12.0484 -30.7797 80.9971 REMARK 3 T TENSOR REMARK 3 T11: -0.2417 T22: -0.2205 REMARK 3 T33: 0.0814 T12: -0.0044 REMARK 3 T13: 0.0269 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 1.8420 L22: 2.9097 REMARK 3 L33: 1.0675 L12: -0.4423 REMARK 3 L13: 0.2788 L23: -0.9456 REMARK 3 S TENSOR REMARK 3 S11: 0.0340 S12: 0.0490 S13: 0.2773 REMARK 3 S21: -0.0199 S22: -0.0873 S23: -0.1461 REMARK 3 S31: -0.0883 S32: 0.0050 S33: 0.0533 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. ZERO OCCUPANCY HYDROGENS WERE REMARK 3 INCLUDED DURING REFINEMENT TO IMPROVE THE ANTI-BUMPING REMARK 3 RESTRAINTS. 2. ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. 3. ANISOU RECORDS CONTAIN SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 4. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 5. NCS RESTRAINTS WERE APPLIED DURING REFINEMENT REMARK 3 USING LSSR (-AUTONCS) IN BUSTER. 6. LIGAND MOLECULES ADENOSINE-5' REMARK 3 -DIPHOSPHATE (ADP) ARE MODELED IN EACH CHAIN BASED ON ELECTRON REMARK 3 DENSITY AND HOMOLOGOUS STRUCTURES. REMARK 4 REMARK 4 4YER COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000206742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-07; 08-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 4.28; 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; SSRL REMARK 200 BEAMLINE : BL1-5; BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999974; REMARK 200 0.97926,0.91837,0.97894 REMARK 200 MONOCHROMATOR : 2-CRYSTAL, SI111; SINGLE CRYSTAL REMARK 200 SI(111) BENT REMARK 200 OPTICS : 2-CRYSTAL MONOCHROMATOR, SI111, REMARK 200 1M LONG RH COATED BENT REMARK 200 CYLINDRICAL MIRROR FOR REMARK 200 HORIZONTAL AND VERTICAL REMARK 200 FOCUSSING; FLAT MIRROR (VERTICAL REMARK 200 FOCUSING); SINGLE CRYSTAL SI(111) REMARK 200 BENT MONOCHROMATOR (HO RIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; MARMOSAIC 325 MM REMARK 200 CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29295 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 29.725 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : 0.80000 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 54.0% POLYETHYLENE GLYCOL 200, 0.2M REMARK 280 SODIUM CHLORIDE, 0.1M PHOSPHATE-CITRATE PH 4.28, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K. 0.2M SODIUM CHLORIDE, 55.0% REMARK 280 POLYETHYLENE GLYCOL 200, 0.1M PHOSPHATE-CITRATE PH 4.2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.65500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.10500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.59000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.10500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.65500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.59000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER ACCORDING TO ANALYTICAL SIZE EXCLUSION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 PHE A 236 REMARK 465 SER A 237 REMARK 465 GLU A 238 REMARK 465 ALA A 239 REMARK 465 VAL A 240 REMARK 465 GLU A 241 REMARK 465 CYS A 242 REMARK 465 LEU A 243 REMARK 465 GLU A 244 REMARK 465 GLY A 245 REMARK 465 SER A 266 REMARK 465 GLY A 267 REMARK 465 ARG A 268 REMARK 465 ALA A 269 REMARK 465 ILE A 270 REMARK 465 PRO A 271 REMARK 465 LYS A 272 REMARK 465 ILE A 273 REMARK 465 PHE A 274 REMARK 465 GLU A 275 REMARK 465 LEU A 276 REMARK 465 ALA A 277 REMARK 465 GLN A 278 REMARK 465 GLN A 279 REMARK 465 LYS A 280 REMARK 465 GLY A 281 REMARK 465 LEU A 282 REMARK 465 LYS A 283 REMARK 465 SER A 314 REMARK 465 PHE A 315 REMARK 465 LYS A 316 REMARK 465 THR A 317 REMARK 465 MSE A 318 REMARK 465 ALA A 319 REMARK 465 ARG A 320 REMARK 465 MSE A 321 REMARK 465 ARG A 322 REMARK 465 MSE A 323 REMARK 465 ARG A 324 REMARK 465 MSE A 325 REMARK 465 ARG A 326 REMARK 465 ARG A 327 REMARK 465 GLY B 0 REMARK 465 PHE B 236 REMARK 465 SER B 237 REMARK 465 GLU B 238 REMARK 465 ALA B 239 REMARK 465 VAL B 240 REMARK 465 GLU B 241 REMARK 465 CYS B 242 REMARK 465 LEU B 243 REMARK 465 GLU B 244 REMARK 465 GLY B 245 REMARK 465 ASP B 246 REMARK 465 PHE B 247 REMARK 465 ILE B 248 REMARK 465 GLU B 249 REMARK 465 SER B 250 REMARK 465 ASN B 262 REMARK 465 VAL B 263 REMARK 465 GLU B 264 REMARK 465 ASP B 265 REMARK 465 SER B 266 REMARK 465 GLY B 267 REMARK 465 ARG B 268 REMARK 465 ALA B 269 REMARK 465 ILE B 270 REMARK 465 PRO B 271 REMARK 465 LYS B 272 REMARK 465 ILE B 273 REMARK 465 PHE B 274 REMARK 465 GLU B 275 REMARK 465 LEU B 276 REMARK 465 ALA B 277 REMARK 465 GLN B 278 REMARK 465 GLN B 279 REMARK 465 LYS B 280 REMARK 465 GLY B 281 REMARK 465 LEU B 282 REMARK 465 SER B 314 REMARK 465 PHE B 315 REMARK 465 LYS B 316 REMARK 465 THR B 317 REMARK 465 MSE B 318 REMARK 465 ALA B 319 REMARK 465 ARG B 320 REMARK 465 MSE B 321 REMARK 465 ARG B 322 REMARK 465 MSE B 323 REMARK 465 ARG B 324 REMARK 465 MSE B 325 REMARK 465 ARG B 326 REMARK 465 ARG B 327 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 1 CG SE CE REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 77 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 LEU A 112 CG CD1 CD2 REMARK 470 LYS A 113 CG CD CE NZ REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 GLU A 127 CG CD OE1 OE2 REMARK 470 GLU A 153 CG CD OE1 OE2 REMARK 470 HIS A 169 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 225 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 229 CG CD CE NZ REMARK 470 GLU A 230 CG CD OE1 OE2 REMARK 470 ARG A 235 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 252 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 GLU A 285 CG CD OE1 OE2 REMARK 470 GLU A 286 CG CD OE1 OE2 REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 ARG A 307 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 309 CG CD OE1 OE2 REMARK 470 MSE B 1 CG SE CE REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 76 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 85 CG OD1 OD2 REMARK 470 ARG B 90 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 LYS B 113 CG CD CE NZ REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 GLU B 118 CG CD OE1 OE2 REMARK 470 LYS B 131 CG CD CE NZ REMARK 470 LYS B 134 CG CD CE NZ REMARK 470 HIS B 169 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 225 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 229 CG CD CE NZ REMARK 470 GLU B 230 CG CD OE1 OE2 REMARK 470 ILE B 231 CG1 CG2 CD1 REMARK 470 ARG B 235 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 252 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 253 CG CD CE NZ REMARK 470 GLU B 285 CG CD OE1 OE2 REMARK 470 GLU B 286 CG CD OE1 OE2 REMARK 470 LYS B 291 CG CD CE NZ REMARK 470 ARG B 307 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 309 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 85 99.72 -58.73 REMARK 500 ASP A 130 54.17 -104.17 REMARK 500 THR A 135 30.98 -93.77 REMARK 500 ASP B 130 54.39 -103.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-283264 RELATED DB: TARGETTRACK DBREF 4YER A 1 327 UNP Q9X1C3 Q9X1C3_THEMA 1 327 DBREF 4YER B 1 327 UNP Q9X1C3 Q9X1C3_THEMA 1 327 SEQADV 4YER GLY A 0 UNP Q9X1C3 EXPRESSION TAG SEQADV 4YER GLY B 0 UNP Q9X1C3 EXPRESSION TAG SEQRES 1 A 328 GLY MSE GLU ASP ILE ILE VAL VAL GLU ASN LEU VAL LYS SEQRES 2 A 328 LYS PHE GLY ASP PHE GLU ALA VAL LYS GLY VAL SER PHE SEQRES 3 A 328 SER VAL LYS LYS GLY GLU ILE PHE ALA PHE LEU GLY PRO SEQRES 4 A 328 ASN GLY ALA GLY LYS THR THR THR ILE HIS MSE LEU THR SEQRES 5 A 328 THR LEU LEU LYS PRO THR SER GLY LYS ALA TRP VAL ALA SEQRES 6 A 328 GLY HIS ASP VAL LEU LYS GLU PRO ARG GLU VAL ARG ARG SEQRES 7 A 328 LYS ILE GLY ILE VAL PHE GLN ASP GLN SER LEU ASP ARG SEQRES 8 A 328 GLU LEU THR ALA TYR GLU ASN MSE TYR ILE HIS GLY LYS SEQRES 9 A 328 ILE TYR GLY TYR GLY GLY GLU LYS LEU LYS LYS ARG ILE SEQRES 10 A 328 LEU GLU LEU LEU GLU PHE VAL GLU LEU LEU GLU PHE LYS SEQRES 11 A 328 ASP LYS PRO VAL LYS THR PHE SER GLY GLY MSE ALA ARG SEQRES 12 A 328 ARG LEU GLU ILE ALA ARG SER LEU ILE HIS GLU PRO GLU SEQRES 13 A 328 VAL LEU PHE LEU ASP GLU PRO THR ILE GLY LEU ASP PRO SEQRES 14 A 328 HIS THR ARG ALA HIS MSE TRP GLU TYR ILE SER LYS MSE SEQRES 15 A 328 LYS LYS GLU HIS ASN MSE THR ILE PHE LEU THR THR HIS SEQRES 16 A 328 TYR MSE ASP GLU ALA GLU GLN LEU ALA ASP ARG VAL ALA SEQRES 17 A 328 ILE ILE ASP HIS GLY LYS ILE ILE ALA LEU GLY THR PRO SEQRES 18 A 328 THR GLU LEU LYS ARG MSE VAL GLY LYS GLU ILE ILE TYR SEQRES 19 A 328 VAL ARG PHE SER GLU ALA VAL GLU CYS LEU GLU GLY ASP SEQRES 20 A 328 PHE ILE GLU SER CYS ARG LYS LEU PRO ASP GLY ARG LEU SEQRES 21 A 328 GLU LEU ASN VAL GLU ASP SER GLY ARG ALA ILE PRO LYS SEQRES 22 A 328 ILE PHE GLU LEU ALA GLN GLN LYS GLY LEU LYS ILE GLU SEQRES 23 A 328 GLU ILE THR TYR HIS LYS PRO THR LEU ASN ASP VAL PHE SEQRES 24 A 328 LEU HIS LEU THR GLY ARG GLU LEU ARG GLU GLU GLY PRO SEQRES 25 A 328 GLU ASN SER PHE LYS THR MSE ALA ARG MSE ARG MSE ARG SEQRES 26 A 328 MSE ARG ARG SEQRES 1 B 328 GLY MSE GLU ASP ILE ILE VAL VAL GLU ASN LEU VAL LYS SEQRES 2 B 328 LYS PHE GLY ASP PHE GLU ALA VAL LYS GLY VAL SER PHE SEQRES 3 B 328 SER VAL LYS LYS GLY GLU ILE PHE ALA PHE LEU GLY PRO SEQRES 4 B 328 ASN GLY ALA GLY LYS THR THR THR ILE HIS MSE LEU THR SEQRES 5 B 328 THR LEU LEU LYS PRO THR SER GLY LYS ALA TRP VAL ALA SEQRES 6 B 328 GLY HIS ASP VAL LEU LYS GLU PRO ARG GLU VAL ARG ARG SEQRES 7 B 328 LYS ILE GLY ILE VAL PHE GLN ASP GLN SER LEU ASP ARG SEQRES 8 B 328 GLU LEU THR ALA TYR GLU ASN MSE TYR ILE HIS GLY LYS SEQRES 9 B 328 ILE TYR GLY TYR GLY GLY GLU LYS LEU LYS LYS ARG ILE SEQRES 10 B 328 LEU GLU LEU LEU GLU PHE VAL GLU LEU LEU GLU PHE LYS SEQRES 11 B 328 ASP LYS PRO VAL LYS THR PHE SER GLY GLY MSE ALA ARG SEQRES 12 B 328 ARG LEU GLU ILE ALA ARG SER LEU ILE HIS GLU PRO GLU SEQRES 13 B 328 VAL LEU PHE LEU ASP GLU PRO THR ILE GLY LEU ASP PRO SEQRES 14 B 328 HIS THR ARG ALA HIS MSE TRP GLU TYR ILE SER LYS MSE SEQRES 15 B 328 LYS LYS GLU HIS ASN MSE THR ILE PHE LEU THR THR HIS SEQRES 16 B 328 TYR MSE ASP GLU ALA GLU GLN LEU ALA ASP ARG VAL ALA SEQRES 17 B 328 ILE ILE ASP HIS GLY LYS ILE ILE ALA LEU GLY THR PRO SEQRES 18 B 328 THR GLU LEU LYS ARG MSE VAL GLY LYS GLU ILE ILE TYR SEQRES 19 B 328 VAL ARG PHE SER GLU ALA VAL GLU CYS LEU GLU GLY ASP SEQRES 20 B 328 PHE ILE GLU SER CYS ARG LYS LEU PRO ASP GLY ARG LEU SEQRES 21 B 328 GLU LEU ASN VAL GLU ASP SER GLY ARG ALA ILE PRO LYS SEQRES 22 B 328 ILE PHE GLU LEU ALA GLN GLN LYS GLY LEU LYS ILE GLU SEQRES 23 B 328 GLU ILE THR TYR HIS LYS PRO THR LEU ASN ASP VAL PHE SEQRES 24 B 328 LEU HIS LEU THR GLY ARG GLU LEU ARG GLU GLU GLY PRO SEQRES 25 B 328 GLU ASN SER PHE LYS THR MSE ALA ARG MSE ARG MSE ARG SEQRES 26 B 328 MSE ARG ARG MODRES 4YER MSE A 1 MET MODIFIED RESIDUE MODRES 4YER MSE A 49 MET MODIFIED RESIDUE MODRES 4YER MSE A 98 MET MODIFIED RESIDUE MODRES 4YER MSE A 140 MET MODIFIED RESIDUE MODRES 4YER MSE A 174 MET MODIFIED RESIDUE MODRES 4YER MSE A 181 MET MODIFIED RESIDUE MODRES 4YER MSE A 187 MET MODIFIED RESIDUE MODRES 4YER MSE A 196 MET MODIFIED RESIDUE MODRES 4YER MSE A 226 MET MODIFIED RESIDUE MODRES 4YER MSE B 1 MET MODIFIED RESIDUE MODRES 4YER MSE B 49 MET MODIFIED RESIDUE MODRES 4YER MSE B 98 MET MODIFIED RESIDUE MODRES 4YER MSE B 140 MET MODIFIED RESIDUE MODRES 4YER MSE B 174 MET MODIFIED RESIDUE MODRES 4YER MSE B 181 MET MODIFIED RESIDUE MODRES 4YER MSE B 187 MET MODIFIED RESIDUE MODRES 4YER MSE B 196 MET MODIFIED RESIDUE MODRES 4YER MSE B 226 MET MODIFIED RESIDUE HET MSE A 1 5 HET MSE A 49 8 HET MSE A 98 8 HET MSE A 140 8 HET MSE A 174 8 HET MSE A 181 8 HET MSE A 187 8 HET MSE A 196 8 HET MSE A 226 8 HET MSE B 1 5 HET MSE B 49 8 HET MSE B 98 8 HET MSE B 140 8 HET MSE B 174 8 HET MSE B 181 8 HET MSE B 187 8 HET MSE B 196 8 HET MSE B 226 8 HET ADP A 400 27 HET CL A 401 1 HET CL A 402 1 HET ADP B 400 27 HETNAM MSE SELENOMETHIONINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM CL CHLORIDE ION FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 CL 2(CL 1-) FORMUL 7 HOH *60(H2 O) HELIX 1 AA1 GLY A 42 THR A 51 1 10 HELIX 2 AA2 GLU A 71 LYS A 78 1 8 HELIX 3 AA3 THR A 93 TYR A 105 1 13 HELIX 4 AA4 GLY A 108 VAL A 123 1 16 HELIX 5 AA5 LEU A 125 LYS A 129 5 5 HELIX 6 AA6 PRO A 132 PHE A 136 5 5 HELIX 7 AA7 SER A 137 LEU A 150 1 14 HELIX 8 AA8 ASP A 167 ASN A 186 1 20 HELIX 9 AA9 TYR A 195 ALA A 203 1 9 HELIX 10 AB1 THR A 219 ARG A 225 1 7 HELIX 11 AB2 THR A 293 GLY A 303 1 11 HELIX 12 AB3 GLY B 42 THR B 51 1 10 HELIX 13 AB4 GLU B 71 LYS B 78 1 8 HELIX 14 AB5 THR B 93 TYR B 105 1 13 HELIX 15 AB6 GLY B 108 VAL B 123 1 16 HELIX 16 AB7 LEU B 125 LYS B 129 5 5 HELIX 17 AB8 PRO B 132 PHE B 136 5 5 HELIX 18 AB9 SER B 137 LEU B 150 1 14 HELIX 19 AC1 ASP B 167 ASN B 186 1 20 HELIX 20 AC2 TYR B 195 ALA B 203 1 9 HELIX 21 AC3 THR B 219 ARG B 225 1 7 HELIX 22 AC4 THR B 293 GLY B 303 1 11 SHEET 1 AA1 4 PHE A 17 LYS A 28 0 SHEET 2 AA1 4 ASP A 3 PHE A 14 -1 N PHE A 14 O PHE A 17 SHEET 3 AA1 4 SER A 58 VAL A 63 -1 O SER A 58 N VAL A 11 SHEET 4 AA1 4 HIS A 66 ASP A 67 -1 O HIS A 66 N VAL A 63 SHEET 1 AA2 6 ILE A 79 VAL A 82 0 SHEET 2 AA2 6 VAL A 156 ASP A 160 1 O PHE A 158 N GLY A 80 SHEET 3 AA2 6 THR A 188 THR A 193 1 O THR A 188 N LEU A 157 SHEET 4 AA2 6 ILE A 32 LEU A 36 1 N PHE A 33 O ILE A 189 SHEET 5 AA2 6 ARG A 205 ASP A 210 1 O ILE A 209 N LEU A 36 SHEET 6 AA2 6 LYS A 213 GLY A 218 -1 O GLY A 218 N VAL A 206 SHEET 1 AA3 8 ILE A 248 LYS A 253 0 SHEET 2 AA3 8 LEU A 259 VAL A 263 -1 O ASN A 262 N GLU A 249 SHEET 3 AA3 8 ILE A 231 ARG A 235 -1 N ILE A 232 O LEU A 261 SHEET 4 AA3 8 GLU A 286 HIS A 290 -1 O THR A 288 N TYR A 233 SHEET 5 AA3 8 ILE B 284 HIS B 290 -1 O TYR B 289 N ILE A 287 SHEET 6 AA3 8 ILE B 231 ARG B 235 -1 N ARG B 235 O GLU B 285 SHEET 7 AA3 8 LEU B 259 LEU B 261 -1 O LEU B 261 N ILE B 232 SHEET 8 AA3 8 ARG B 252 LYS B 253 -1 N ARG B 252 O GLU B 260 SHEET 1 AA4 4 PHE B 17 LYS B 28 0 SHEET 2 AA4 4 ASP B 3 PHE B 14 -1 N VAL B 7 O PHE B 25 SHEET 3 AA4 4 SER B 58 VAL B 63 -1 O SER B 58 N VAL B 11 SHEET 4 AA4 4 HIS B 66 ASP B 67 -1 O HIS B 66 N VAL B 63 SHEET 1 AA5 6 ILE B 79 VAL B 82 0 SHEET 2 AA5 6 VAL B 156 ASP B 160 1 O PHE B 158 N GLY B 80 SHEET 3 AA5 6 THR B 188 THR B 193 1 O THR B 188 N LEU B 157 SHEET 4 AA5 6 ILE B 32 LEU B 36 1 N PHE B 33 O ILE B 189 SHEET 5 AA5 6 ARG B 205 ASP B 210 1 O ILE B 209 N LEU B 36 SHEET 6 AA5 6 LYS B 213 GLY B 218 -1 O GLY B 218 N VAL B 206 LINK C MSE A 1 N GLU A 2 1555 1555 1.34 LINK C HIS A 48 N MSE A 49 1555 1555 1.35 LINK C MSE A 49 N LEU A 50 1555 1555 1.35 LINK C ASN A 97 N MSE A 98 1555 1555 1.35 LINK C MSE A 98 N TYR A 99 1555 1555 1.36 LINK C GLY A 139 N MSE A 140 1555 1555 1.34 LINK C MSE A 140 N ALA A 141 1555 1555 1.35 LINK C HIS A 173 N MSE A 174 1555 1555 1.35 LINK C MSE A 174 N TRP A 175 1555 1555 1.34 LINK C LYS A 180 N MSE A 181 1555 1555 1.33 LINK C MSE A 181 N LYS A 182 1555 1555 1.35 LINK C ASN A 186 N MSE A 187 1555 1555 1.32 LINK C MSE A 187 N THR A 188 1555 1555 1.33 LINK C TYR A 195 N MSE A 196 1555 1555 1.34 LINK C MSE A 196 N ASP A 197 1555 1555 1.34 LINK C ARG A 225 N MSE A 226 1555 1555 1.35 LINK C MSE A 226 N VAL A 227 1555 1555 1.35 LINK C MSE B 1 N GLU B 2 1555 1555 1.35 LINK C HIS B 48 N MSE B 49 1555 1555 1.36 LINK C MSE B 49 N LEU B 50 1555 1555 1.35 LINK C ASN B 97 N MSE B 98 1555 1555 1.33 LINK C MSE B 98 N TYR B 99 1555 1555 1.34 LINK C GLY B 139 N MSE B 140 1555 1555 1.34 LINK C MSE B 140 N ALA B 141 1555 1555 1.35 LINK C HIS B 173 N MSE B 174 1555 1555 1.34 LINK C MSE B 174 N TRP B 175 1555 1555 1.34 LINK C LYS B 180 N MSE B 181 1555 1555 1.35 LINK C MSE B 181 N LYS B 182 1555 1555 1.35 LINK C ASN B 186 N MSE B 187 1555 1555 1.32 LINK C MSE B 187 N THR B 188 1555 1555 1.35 LINK C TYR B 195 N MSE B 196 1555 1555 1.33 LINK C MSE B 196 N ASP B 197 1555 1555 1.36 LINK C ARG B 225 N MSE B 226 1555 1555 1.35 LINK C MSE B 226 N VAL B 227 1555 1555 1.35 SITE 1 AC1 14 PHE A 14 PHE A 17 ALA A 19 PRO A 38 SITE 2 AC1 14 ASN A 39 GLY A 40 ALA A 41 GLY A 42 SITE 3 AC1 14 LYS A 43 THR A 44 THR A 45 THR B 135 SITE 4 AC1 14 PHE B 136 SER B 137 SITE 1 AC2 3 ASP A 210 LYS A 213 LYS B 13 SITE 1 AC3 4 HIS A 194 GLU A 308 HIS B 194 GLU B 308 SITE 1 AC4 16 LYS A 134 THR A 135 PHE A 136 SER A 137 SITE 2 AC4 16 PHE B 14 PHE B 17 ALA B 19 PRO B 38 SITE 3 AC4 16 ASN B 39 GLY B 40 ALA B 41 GLY B 42 SITE 4 AC4 16 LYS B 43 THR B 44 THR B 45 HOH B 512 CRYST1 61.310 101.180 110.210 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016311 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009883 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009074 0.00000 HETATM 1 N MSE A 1 32.520 -8.734 79.576 1.00 79.30 N ANISOU 1 N MSE A 1 6770 9596 13762 -397 -173 -523 N HETATM 2 CA MSE A 1 31.184 -9.251 79.872 1.00 77.56 C ANISOU 2 CA MSE A 1 6781 9301 13388 -315 -240 -465 C HETATM 3 C MSE A 1 30.167 -8.568 78.920 1.00 79.76 C ANISOU 3 C MSE A 1 7213 9501 13591 -400 -107 -357 C HETATM 4 O MSE A 1 29.488 -7.597 79.282 1.00 79.28 O ANISOU 4 O MSE A 1 7242 9352 13528 -484 -128 -324 O HETATM 5 CB MSE A 1 30.855 -9.020 81.362 1.00 79.66 C ANISOU 5 CB MSE A 1 7096 9527 13644 -305 -424 -511 C