data_4YEY # _entry.id 4YEY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4YEY pdb_00004yey 10.2210/pdb4yey/pdb WWPDB D_1000207344 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 4YEW PDB . unspecified 4YEX PDB . unspecified 4YF0 PDB . unspecified 4YFH PDB . unspecified 4YFT PDB . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4YEY _pdbx_database_status.recvd_initial_deposition_date 2015-02-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hammel, M.' 1 'Reyes, F.E.' 2 'Parpana, R.' 3 'Tainer, J.A.' 4 'Adhya, S.' 5 'Amlanjyoti, D.' 6 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Adv' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2375-2548 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 2 _citation.language ? _citation.page_first e1600650 _citation.page_last e1600650 _citation.title 'HU multimerization shift controls nucleoid compaction.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/sciadv.1600650 _citation.pdbx_database_id_PubMed 27482541 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hammel, M.' 1 ? primary 'Amlanjyoti, D.' 2 ? primary 'Reyes, F.E.' 3 ? primary 'Chen, J.H.' 4 ? primary 'Parpana, R.' 5 ? primary 'Tang, H.Y.' 6 ? primary 'Larabell, C.A.' 7 ? primary 'Tainer, J.A.' 8 ? primary 'Adhya, S.' 9 0000-0002-8663-6178 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 112.420 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 4YEY _cell.details ? _cell.formula_units_Z ? _cell.length_a 107.300 _cell.length_a_esd ? _cell.length_b 50.750 _cell.length_b_esd ? _cell.length_c 62.830 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YEY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA-binding protein HU-alpha' 9621.058 2 ? ? ? ? 2 polymer syn 'synthetic DNA strand' 4307.780 1 ? ? ? ? 3 polymer syn 'synthetic DNA strand' 4292.769 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name HU-2,NS2 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;AMNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAF VSGKALKDAVK ; ;AMNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAF VSGKALKDAVK ; A,C ? 2 polydeoxyribonucleotide no no '(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DT)' CCCCCCCCCCCCCCT B ? 3 polydeoxyribonucleotide no no '(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)(DC)' CCCCCCCCCCCCCCC D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 MET n 1 3 ASN n 1 4 LYS n 1 5 THR n 1 6 GLN n 1 7 LEU n 1 8 ILE n 1 9 ASP n 1 10 VAL n 1 11 ILE n 1 12 ALA n 1 13 GLU n 1 14 LYS n 1 15 ALA n 1 16 GLU n 1 17 LEU n 1 18 SER n 1 19 LYS n 1 20 THR n 1 21 GLN n 1 22 ALA n 1 23 LYS n 1 24 ALA n 1 25 ALA n 1 26 LEU n 1 27 GLU n 1 28 SER n 1 29 THR n 1 30 LEU n 1 31 ALA n 1 32 ALA n 1 33 ILE n 1 34 THR n 1 35 GLU n 1 36 SER n 1 37 LEU n 1 38 LYS n 1 39 GLU n 1 40 GLY n 1 41 ASP n 1 42 ALA n 1 43 VAL n 1 44 GLN n 1 45 LEU n 1 46 VAL n 1 47 GLY n 1 48 PHE n 1 49 GLY n 1 50 THR n 1 51 PHE n 1 52 LYS n 1 53 VAL n 1 54 ASN n 1 55 HIS n 1 56 ARG n 1 57 ALA n 1 58 GLU n 1 59 ARG n 1 60 THR n 1 61 GLY n 1 62 ARG n 1 63 ASN n 1 64 PRO n 1 65 GLN n 1 66 THR n 1 67 GLY n 1 68 LYS n 1 69 GLU n 1 70 ILE n 1 71 LYS n 1 72 ILE n 1 73 ALA n 1 74 ALA n 1 75 ALA n 1 76 ASN n 1 77 VAL n 1 78 PRO n 1 79 ALA n 1 80 PHE n 1 81 VAL n 1 82 SER n 1 83 GLY n 1 84 LYS n 1 85 ALA n 1 86 LEU n 1 87 LYS n 1 88 ASP n 1 89 ALA n 1 90 VAL n 1 91 LYS n 2 1 DC n 2 2 DC n 2 3 DC n 2 4 DC n 2 5 DC n 2 6 DC n 2 7 DC n 2 8 DC n 2 9 DC n 2 10 DC n 2 11 DC n 2 12 DC n 2 13 DC n 2 14 DC n 2 15 DT n 3 1 DC n 3 2 DC n 3 3 DC n 3 4 DC n 3 5 DC n 3 6 DC n 3 7 DC n 3 8 DC n 3 9 DC n 3 10 DC n 3 11 DC n 3 12 DC n 3 13 DC n 3 14 DC n 3 15 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 91 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene hupA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain Es _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 15 'Escherichia coli' ? 562 ? 3 1 sample 1 15 'Escherichia coli' ? 562 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP DBHA_ECO57 P0ACF2 ? 1 ;MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFV SGKALKDAVK ; 1 2 PDB 4YEY 4YEY ? 2 ? 1 3 PDB 4YEY 4YEY ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4YEY A 2 ? 91 ? P0ACF2 1 ? 90 ? 1 90 2 2 4YEY B 1 ? 15 ? 4YEY 6 ? 20 ? 6 20 3 3 4YEY D 1 ? 15 ? 4YEY 101 ? 115 ? 101 115 4 1 4YEY C 2 ? 91 ? P0ACF2 1 ? 90 ? 1 90 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4YEY ALA A 1 ? UNP P0ACF2 ? ? 'expression tag' 0 1 4 4YEY ALA C 1 ? UNP P0ACF2 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4YEY _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.99 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 58.9 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M Bis-Tris pH 6.5, 45% 2-Methyl-2,4-pentadiol, 0.2M NH4F' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 93.15 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details Q315R _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-01-25 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 12.3.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 12.3.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4YEY _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.354 _reflns.d_resolution_low 58.080 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all 4566 _reflns.number_obs 4566 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.400 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.500 _reflns.pdbx_Rmerge_I_obs 0.046 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 17.03 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 16115 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 3.354 _reflns_shell.d_res_low 3.368 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.701 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 98 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.708 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.41 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -18.1016 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -45.9637 _refine.aniso_B[2][2] 2.3272 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 15.7744 _refine.B_iso_max 218.820 _refine.B_iso_mean 150.2320 _refine.B_iso_min 94.580 _refine.correlation_coeff_Fo_to_Fc 0.9115 _refine.correlation_coeff_Fo_to_Fc_free 0.9070 _refine.details ;The asymmetric unit of the crystal contains multiple, out-of-register duplex positions, such that backbones superimpose, but base identity differs. The density is an average of all nucleotides, and the DNA chain was built accordingly. ; _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4YEY _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.354 _refine.ls_d_res_low 58.0800 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4556 _refine.ls_number_reflns_R_free 210 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.5500 _refine.ls_percent_reflns_R_free 4.6100 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2368 _refine.ls_R_factor_R_free 0.2666 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2353 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1MUL _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI 0.5300 _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 4YEY _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 1.059 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1060 _refine_hist.pdbx_number_atoms_nucleic_acid 571 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1631 _refine_hist.d_res_high 3.354 _refine_hist.d_res_low 58.0800 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? ? ? 523 ? t_dihedral_angle_d 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' ? ? ? 29 ? t_trig_c_planes 2.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 180 ? t_gen_planes 5.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 1695 ? t_it 20.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_nbd ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ? 'X-RAY DIFFRACTION' ? ? ? 244 ? t_chiral_improper_torsion 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_sum_occupancies ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 1768 ? t_ideal_dist_contact 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? 0.010 ? 1695 ? t_bond_d 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 1.140 ? 2389 ? t_angle_deg 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 1.990 ? ? ? t_omega_torsion ? ? 'X-RAY DIFFRACTION' ? 23.520 ? ? ? t_other_torsion ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 3.3500 _refine_ls_shell.d_res_low 3.7500 _refine_ls_shell.number_reflns_all 1258 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.number_reflns_R_work 1199 _refine_ls_shell.percent_reflns_obs 98.5500 _refine_ls_shell.percent_reflns_R_free 4.6900 _refine_ls_shell.R_factor_all 0.3000 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3288 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2986 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 4YEY _struct.title HUaa-20bp _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4YEY _struct_keywords.text 'HU-DNA, transcription, pathogenicity, DNA BINDING PROTEIN-DNA complex' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 1 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 4 ? ALA A 15 ? LYS A 3 ALA A 14 1 ? 12 HELX_P HELX_P2 AA2 SER A 18 ? GLU A 39 ? SER A 17 GLU A 38 1 ? 22 HELX_P HELX_P3 AA3 GLY A 83 ? LYS A 91 ? GLY A 82 LYS A 90 1 ? 9 HELX_P HELX_P4 AA4 LYS D 4 ? ALA D 15 ? LYS C 3 ALA C 14 1 ? 12 HELX_P HELX_P5 AA5 SER D 18 ? GLU D 39 ? SER C 17 GLU C 38 1 ? 22 HELX_P HELX_P6 AA6 GLY D 83 ? LYS D 91 ? GLY C 82 LYS C 90 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DC 10 N4 ? ? B DC 10 D DC 110 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog2 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DC 7 N3 ? ? B DC 13 D DC 107 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog3 hydrog ? ? B DC 12 N4 ? ? ? 1_555 C DC 3 N3 ? ? B DC 17 D DC 103 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog4 hydrog ? ? B DC 14 N4 ? ? ? 1_555 C DC 1 N3 ? ? B DC 19 D DC 101 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 MET A 2 ? ASN A 3 ? MET A 1 ASN A 2 AA1 2 VAL D 43 ? LEU D 45 ? VAL C 42 LEU C 44 AA1 3 GLY D 49 ? ASN D 54 ? GLY C 48 ASN C 53 AA1 4 VAL D 77 ? SER D 82 ? VAL C 76 SER C 81 AA2 1 VAL A 77 ? SER A 82 ? VAL A 76 SER A 81 AA2 2 GLY A 49 ? ASN A 54 ? GLY A 48 ASN A 53 AA2 3 VAL A 43 ? LEU A 45 ? VAL A 42 LEU A 44 AA2 4 MET D 2 ? ASN D 3 ? MET C 1 ASN C 2 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N MET A 2 ? N MET A 1 O GLN D 44 ? O GLN C 43 AA1 2 3 N VAL D 43 ? N VAL C 42 O PHE D 51 ? O PHE C 50 AA1 3 4 N ASN D 54 ? N ASN C 53 O VAL D 77 ? O VAL C 76 AA2 1 2 O VAL A 77 ? O VAL A 76 N ASN A 54 ? N ASN A 53 AA2 2 3 O PHE A 51 ? O PHE A 50 N VAL A 43 ? N VAL A 42 AA2 3 4 N GLN A 44 ? N GLN A 43 O MET D 2 ? O MET C 1 # _atom_sites.entry_id 4YEY _atom_sites.fract_transf_matrix[1][1] 0.009320 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003845 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019704 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017217 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 0 0 ALA ALA A . n A 1 2 MET 2 1 1 MET MET A . n A 1 3 ASN 3 2 2 ASN ASN A . n A 1 4 LYS 4 3 3 LYS LYS A . n A 1 5 THR 5 4 4 THR THR A . n A 1 6 GLN 6 5 5 GLN GLN A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 ILE 8 7 7 ILE ILE A . n A 1 9 ASP 9 8 8 ASP ASP A . n A 1 10 VAL 10 9 9 VAL VAL A . n A 1 11 ILE 11 10 10 ILE ILE A . n A 1 12 ALA 12 11 11 ALA ALA A . n A 1 13 GLU 13 12 12 GLU GLU A . n A 1 14 LYS 14 13 13 LYS LYS A . n A 1 15 ALA 15 14 14 ALA ALA A . n A 1 16 GLU 16 15 15 GLU GLU A . n A 1 17 LEU 17 16 16 LEU LEU A . n A 1 18 SER 18 17 17 SER SER A . n A 1 19 LYS 19 18 18 LYS LYS A . n A 1 20 THR 20 19 19 THR THR A . n A 1 21 GLN 21 20 20 GLN GLN A . n A 1 22 ALA 22 21 21 ALA ALA A . n A 1 23 LYS 23 22 22 LYS LYS A . n A 1 24 ALA 24 23 23 ALA ALA A . n A 1 25 ALA 25 24 24 ALA ALA A . n A 1 26 LEU 26 25 25 LEU LEU A . n A 1 27 GLU 27 26 26 GLU GLU A . n A 1 28 SER 28 27 27 SER SER A . n A 1 29 THR 29 28 28 THR THR A . n A 1 30 LEU 30 29 29 LEU LEU A . n A 1 31 ALA 31 30 30 ALA ALA A . n A 1 32 ALA 32 31 31 ALA ALA A . n A 1 33 ILE 33 32 32 ILE ILE A . n A 1 34 THR 34 33 33 THR THR A . n A 1 35 GLU 35 34 34 GLU GLU A . n A 1 36 SER 36 35 35 SER SER A . n A 1 37 LEU 37 36 36 LEU LEU A . n A 1 38 LYS 38 37 37 LYS LYS A . n A 1 39 GLU 39 38 38 GLU GLU A . n A 1 40 GLY 40 39 39 GLY GLY A . n A 1 41 ASP 41 40 40 ASP ASP A . n A 1 42 ALA 42 41 41 ALA ALA A . n A 1 43 VAL 43 42 42 VAL VAL A . n A 1 44 GLN 44 43 43 GLN GLN A . n A 1 45 LEU 45 44 44 LEU LEU A . n A 1 46 VAL 46 45 45 VAL VAL A . n A 1 47 GLY 47 46 46 GLY GLY A . n A 1 48 PHE 48 47 47 PHE PHE A . n A 1 49 GLY 49 48 48 GLY GLY A . n A 1 50 THR 50 49 49 THR THR A . n A 1 51 PHE 51 50 50 PHE PHE A . n A 1 52 LYS 52 51 51 LYS LYS A . n A 1 53 VAL 53 52 52 VAL VAL A . n A 1 54 ASN 54 53 53 ASN ASN A . n A 1 55 HIS 55 54 54 HIS HIS A . n A 1 56 ARG 56 55 55 ARG ARG A . n A 1 57 ALA 57 56 ? ? ? A . n A 1 58 GLU 58 57 ? ? ? A . n A 1 59 ARG 59 58 ? ? ? A . n A 1 60 THR 60 59 ? ? ? A . n A 1 61 GLY 61 60 ? ? ? A . n A 1 62 ARG 62 61 ? ? ? A . n A 1 63 ASN 63 62 ? ? ? A . n A 1 64 PRO 64 63 ? ? ? A . n A 1 65 GLN 65 64 ? ? ? A . n A 1 66 THR 66 65 ? ? ? A . n A 1 67 GLY 67 66 ? ? ? A . n A 1 68 LYS 68 67 ? ? ? A . n A 1 69 GLU 69 68 ? ? ? A . n A 1 70 ILE 70 69 ? ? ? A . n A 1 71 LYS 71 70 ? ? ? A . n A 1 72 ILE 72 71 ? ? ? A . n A 1 73 ALA 73 72 ? ? ? A . n A 1 74 ALA 74 73 ? ? ? A . n A 1 75 ALA 75 74 74 ALA ALA A . n A 1 76 ASN 76 75 75 ASN ASN A . n A 1 77 VAL 77 76 76 VAL VAL A . n A 1 78 PRO 78 77 77 PRO PRO A . n A 1 79 ALA 79 78 78 ALA ALA A . n A 1 80 PHE 80 79 79 PHE PHE A . n A 1 81 VAL 81 80 80 VAL VAL A . n A 1 82 SER 82 81 81 SER SER A . n A 1 83 GLY 83 82 82 GLY GLY A . n A 1 84 LYS 84 83 83 LYS LYS A . n A 1 85 ALA 85 84 84 ALA ALA A . n A 1 86 LEU 86 85 85 LEU LEU A . n A 1 87 LYS 87 86 86 LYS LYS A . n A 1 88 ASP 88 87 87 ASP ASP A . n A 1 89 ALA 89 88 88 ALA ALA A . n A 1 90 VAL 90 89 89 VAL VAL A . n A 1 91 LYS 91 90 90 LYS LYS A . n B 2 1 DC 1 6 6 DC C B . n B 2 2 DC 2 7 7 DC C B . n B 2 3 DC 3 8 8 DC C B . n B 2 4 DC 4 9 9 DC C B . n B 2 5 DC 5 10 10 DC C B . n B 2 6 DC 6 11 11 DC C B . n B 2 7 DC 7 12 12 DC C B . n B 2 8 DC 8 13 13 DC C B . n B 2 9 DC 9 14 14 DC C B . n B 2 10 DC 10 15 15 DC C B . n B 2 11 DC 11 16 16 DC C B . n B 2 12 DC 12 17 17 DC C B . n B 2 13 DC 13 18 18 DC C B . n B 2 14 DC 14 19 19 DC C B . n B 2 15 DT 15 20 20 DT T B . n C 3 1 DC 1 101 101 DC C D . n C 3 2 DC 2 102 102 DC C D . n C 3 3 DC 3 103 103 DC C D . n C 3 4 DC 4 104 104 DC C D . n C 3 5 DC 5 105 105 DC C D . n C 3 6 DC 6 106 106 DC C D . n C 3 7 DC 7 107 107 DC C D . n C 3 8 DC 8 108 108 DC C D . n C 3 9 DC 9 109 109 DC C D . n C 3 10 DC 10 110 110 DC C D . n C 3 11 DC 11 111 111 DC C D . n C 3 12 DC 12 112 112 DC C D . n C 3 13 DC 13 113 113 DC C D . n C 3 14 DC 14 114 114 DC C D . n C 3 15 DC 15 115 115 DC C D . n D 1 1 ALA 1 0 0 ALA ALA C . n D 1 2 MET 2 1 1 MET MET C . n D 1 3 ASN 3 2 2 ASN ASN C . n D 1 4 LYS 4 3 3 LYS LYS C . n D 1 5 THR 5 4 4 THR THR C . n D 1 6 GLN 6 5 5 GLN GLN C . n D 1 7 LEU 7 6 6 LEU LEU C . n D 1 8 ILE 8 7 7 ILE ILE C . n D 1 9 ASP 9 8 8 ASP ASP C . n D 1 10 VAL 10 9 9 VAL VAL C . n D 1 11 ILE 11 10 10 ILE ILE C . n D 1 12 ALA 12 11 11 ALA ALA C . n D 1 13 GLU 13 12 12 GLU GLU C . n D 1 14 LYS 14 13 13 LYS LYS C . n D 1 15 ALA 15 14 14 ALA ALA C . n D 1 16 GLU 16 15 15 GLU GLU C . n D 1 17 LEU 17 16 16 LEU LEU C . n D 1 18 SER 18 17 17 SER SER C . n D 1 19 LYS 19 18 18 LYS LYS C . n D 1 20 THR 20 19 19 THR THR C . n D 1 21 GLN 21 20 20 GLN GLN C . n D 1 22 ALA 22 21 21 ALA ALA C . n D 1 23 LYS 23 22 22 LYS LYS C . n D 1 24 ALA 24 23 23 ALA ALA C . n D 1 25 ALA 25 24 24 ALA ALA C . n D 1 26 LEU 26 25 25 LEU LEU C . n D 1 27 GLU 27 26 26 GLU GLU C . n D 1 28 SER 28 27 27 SER SER C . n D 1 29 THR 29 28 28 THR THR C . n D 1 30 LEU 30 29 29 LEU LEU C . n D 1 31 ALA 31 30 30 ALA ALA C . n D 1 32 ALA 32 31 31 ALA ALA C . n D 1 33 ILE 33 32 32 ILE ILE C . n D 1 34 THR 34 33 33 THR THR C . n D 1 35 GLU 35 34 34 GLU GLU C . n D 1 36 SER 36 35 35 SER SER C . n D 1 37 LEU 37 36 36 LEU LEU C . n D 1 38 LYS 38 37 37 LYS LYS C . n D 1 39 GLU 39 38 38 GLU GLU C . n D 1 40 GLY 40 39 39 GLY GLY C . n D 1 41 ASP 41 40 40 ASP ASP C . n D 1 42 ALA 42 41 41 ALA ALA C . n D 1 43 VAL 43 42 42 VAL VAL C . n D 1 44 GLN 44 43 43 GLN GLN C . n D 1 45 LEU 45 44 44 LEU LEU C . n D 1 46 VAL 46 45 45 VAL VAL C . n D 1 47 GLY 47 46 46 GLY GLY C . n D 1 48 PHE 48 47 47 PHE PHE C . n D 1 49 GLY 49 48 48 GLY GLY C . n D 1 50 THR 50 49 49 THR THR C . n D 1 51 PHE 51 50 50 PHE PHE C . n D 1 52 LYS 52 51 51 LYS LYS C . n D 1 53 VAL 53 52 52 VAL VAL C . n D 1 54 ASN 54 53 53 ASN ASN C . n D 1 55 HIS 55 54 54 HIS HIS C . n D 1 56 ARG 56 55 ? ? ? C . n D 1 57 ALA 57 56 ? ? ? C . n D 1 58 GLU 58 57 ? ? ? C . n D 1 59 ARG 59 58 ? ? ? C . n D 1 60 THR 60 59 ? ? ? C . n D 1 61 GLY 61 60 ? ? ? C . n D 1 62 ARG 62 61 ? ? ? C . n D 1 63 ASN 63 62 ? ? ? C . n D 1 64 PRO 64 63 ? ? ? C . n D 1 65 GLN 65 64 ? ? ? C . n D 1 66 THR 66 65 ? ? ? C . n D 1 67 GLY 67 66 ? ? ? C . n D 1 68 LYS 68 67 ? ? ? C . n D 1 69 GLU 69 68 ? ? ? C . n D 1 70 ILE 70 69 ? ? ? C . n D 1 71 LYS 71 70 ? ? ? C . n D 1 72 ILE 72 71 ? ? ? C . n D 1 73 ALA 73 72 ? ? ? C . n D 1 74 ALA 74 73 73 ALA ALA C . n D 1 75 ALA 75 74 74 ALA ALA C . n D 1 76 ASN 76 75 75 ASN ASN C . n D 1 77 VAL 77 76 76 VAL VAL C . n D 1 78 PRO 78 77 77 PRO PRO C . n D 1 79 ALA 79 78 78 ALA ALA C . n D 1 80 PHE 80 79 79 PHE PHE C . n D 1 81 VAL 81 80 80 VAL VAL C . n D 1 82 SER 82 81 81 SER SER C . n D 1 83 GLY 83 82 82 GLY GLY C . n D 1 84 LYS 84 83 83 LYS LYS C . n D 1 85 ALA 85 84 84 ALA ALA C . n D 1 86 LEU 86 85 85 LEU LEU C . n D 1 87 LYS 87 86 86 LYS LYS C . n D 1 88 ASP 88 87 87 ASP ASP C . n D 1 89 ALA 89 88 88 ALA ALA C . n D 1 90 VAL 90 89 89 VAL VAL C . n D 1 91 LYS 91 90 90 LYS LYS C . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5750 ? 1 MORE -54 ? 1 'SSA (A^2)' 12630 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-06-29 2 'Structure model' 1 1 2019-02-20 3 'Structure model' 1 2 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' pdbx_struct_oper_list 4 3 'Structure model' chem_comp_atom 5 3 'Structure model' chem_comp_bond 6 3 'Structure model' database_2 7 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 13 3 'Structure model' '_database_2.pdbx_DOI' 14 3 'Structure model' '_database_2.pdbx_database_accession' # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER-TNT ? ? ? 'BUSTER 2.10.0' 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.11 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.10.0 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 6 # _pdbx_entry_details.compound_details ? _pdbx_entry_details.entry_id 4YEY _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;DNA sample sequence used in experiment is 5'-GTTCAATTGTTGTTAACTTG-3'. But the asymmetric unit contains multiple, out-of-register duplex positions, so the DNA chain is modeled according to averaged density. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C1'" B DC 6 ? ? N1 B DC 6 ? ? 1.573 1.488 0.085 0.013 N 2 1 "C1'" B DC 8 ? ? N1 B DC 8 ? ? 1.568 1.488 0.080 0.013 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 110.54 108.30 2.24 0.30 N 2 1 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.83 108.30 2.53 0.30 N 3 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 113.34 108.30 5.04 0.30 N 4 1 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1 B DC 17 ? ? 110.40 108.30 2.10 0.30 N 5 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 110.54 108.30 2.24 0.30 N 6 1 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? N1 B DC 19 ? ? 110.97 108.30 2.67 0.30 N 7 1 "O4'" D DC 101 ? ? "C1'" D DC 101 ? ? N1 D DC 101 ? ? 110.12 108.30 1.82 0.30 N 8 1 "O4'" D DC 105 ? ? "C1'" D DC 105 ? ? N1 D DC 105 ? ? 110.54 108.30 2.24 0.30 N 9 1 "O4'" D DC 106 ? ? "C1'" D DC 106 ? ? N1 D DC 106 ? ? 110.40 108.30 2.10 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 54 ? ? -90.84 59.84 2 1 PHE C 47 ? ? -84.54 -80.48 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 12 ? CG ? A GLU 13 CG 2 1 Y 1 A GLU 12 ? CD ? A GLU 13 CD 3 1 Y 1 A GLU 12 ? OE1 ? A GLU 13 OE1 4 1 Y 1 A GLU 12 ? OE2 ? A GLU 13 OE2 5 1 Y 1 A ARG 55 ? NE ? A ARG 56 NE 6 1 Y 1 A ARG 55 ? CZ ? A ARG 56 CZ 7 1 Y 1 A ARG 55 ? NH1 ? A ARG 56 NH1 8 1 Y 1 A ARG 55 ? NH2 ? A ARG 56 NH2 9 1 Y 1 A LYS 90 ? CD ? A LYS 91 CD 10 1 Y 1 A LYS 90 ? CE ? A LYS 91 CE 11 1 Y 1 A LYS 90 ? NZ ? A LYS 91 NZ 12 1 Y 1 C LYS 90 ? CD ? D LYS 91 CD 13 1 Y 1 C LYS 90 ? CE ? D LYS 91 CE 14 1 Y 1 C LYS 90 ? NZ ? D LYS 91 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 56 ? A ALA 57 2 1 Y 1 A GLU 57 ? A GLU 58 3 1 Y 1 A ARG 58 ? A ARG 59 4 1 Y 1 A THR 59 ? A THR 60 5 1 Y 1 A GLY 60 ? A GLY 61 6 1 Y 1 A ARG 61 ? A ARG 62 7 1 Y 1 A ASN 62 ? A ASN 63 8 1 Y 1 A PRO 63 ? A PRO 64 9 1 Y 1 A GLN 64 ? A GLN 65 10 1 Y 1 A THR 65 ? A THR 66 11 1 Y 1 A GLY 66 ? A GLY 67 12 1 Y 1 A LYS 67 ? A LYS 68 13 1 Y 1 A GLU 68 ? A GLU 69 14 1 Y 1 A ILE 69 ? A ILE 70 15 1 Y 1 A LYS 70 ? A LYS 71 16 1 Y 1 A ILE 71 ? A ILE 72 17 1 Y 1 A ALA 72 ? A ALA 73 18 1 Y 1 A ALA 73 ? A ALA 74 19 1 Y 1 C ARG 55 ? D ARG 56 20 1 Y 1 C ALA 56 ? D ALA 57 21 1 Y 1 C GLU 57 ? D GLU 58 22 1 Y 1 C ARG 58 ? D ARG 59 23 1 Y 1 C THR 59 ? D THR 60 24 1 Y 1 C GLY 60 ? D GLY 61 25 1 Y 1 C ARG 61 ? D ARG 62 26 1 Y 1 C ASN 62 ? D ASN 63 27 1 Y 1 C PRO 63 ? D PRO 64 28 1 Y 1 C GLN 64 ? D GLN 65 29 1 Y 1 C THR 65 ? D THR 66 30 1 Y 1 C GLY 66 ? D GLY 67 31 1 Y 1 C LYS 67 ? D LYS 68 32 1 Y 1 C GLU 68 ? D GLU 69 33 1 Y 1 C ILE 69 ? D ILE 70 34 1 Y 1 C LYS 70 ? D LYS 71 35 1 Y 1 C ILE 71 ? D ILE 72 36 1 Y 1 C ALA 72 ? D ALA 73 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DC OP3 O N N 74 DC P P N N 75 DC OP1 O N N 76 DC OP2 O N N 77 DC "O5'" O N N 78 DC "C5'" C N N 79 DC "C4'" C N R 80 DC "O4'" O N N 81 DC "C3'" C N S 82 DC "O3'" O N N 83 DC "C2'" C N N 84 DC "C1'" C N R 85 DC N1 N N N 86 DC C2 C N N 87 DC O2 O N N 88 DC N3 N N N 89 DC C4 C N N 90 DC N4 N N N 91 DC C5 C N N 92 DC C6 C N N 93 DC HOP3 H N N 94 DC HOP2 H N N 95 DC "H5'" H N N 96 DC "H5''" H N N 97 DC "H4'" H N N 98 DC "H3'" H N N 99 DC "HO3'" H N N 100 DC "H2'" H N N 101 DC "H2''" H N N 102 DC "H1'" H N N 103 DC H41 H N N 104 DC H42 H N N 105 DC H5 H N N 106 DC H6 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 GLN N N N N 144 GLN CA C N S 145 GLN C C N N 146 GLN O O N N 147 GLN CB C N N 148 GLN CG C N N 149 GLN CD C N N 150 GLN OE1 O N N 151 GLN NE2 N N N 152 GLN OXT O N N 153 GLN H H N N 154 GLN H2 H N N 155 GLN HA H N N 156 GLN HB2 H N N 157 GLN HB3 H N N 158 GLN HG2 H N N 159 GLN HG3 H N N 160 GLN HE21 H N N 161 GLN HE22 H N N 162 GLN HXT H N N 163 GLU N N N N 164 GLU CA C N S 165 GLU C C N N 166 GLU O O N N 167 GLU CB C N N 168 GLU CG C N N 169 GLU CD C N N 170 GLU OE1 O N N 171 GLU OE2 O N N 172 GLU OXT O N N 173 GLU H H N N 174 GLU H2 H N N 175 GLU HA H N N 176 GLU HB2 H N N 177 GLU HB3 H N N 178 GLU HG2 H N N 179 GLU HG3 H N N 180 GLU HE2 H N N 181 GLU HXT H N N 182 GLY N N N N 183 GLY CA C N N 184 GLY C C N N 185 GLY O O N N 186 GLY OXT O N N 187 GLY H H N N 188 GLY H2 H N N 189 GLY HA2 H N N 190 GLY HA3 H N N 191 GLY HXT H N N 192 HIS N N N N 193 HIS CA C N S 194 HIS C C N N 195 HIS O O N N 196 HIS CB C N N 197 HIS CG C Y N 198 HIS ND1 N Y N 199 HIS CD2 C Y N 200 HIS CE1 C Y N 201 HIS NE2 N Y N 202 HIS OXT O N N 203 HIS H H N N 204 HIS H2 H N N 205 HIS HA H N N 206 HIS HB2 H N N 207 HIS HB3 H N N 208 HIS HD1 H N N 209 HIS HD2 H N N 210 HIS HE1 H N N 211 HIS HE2 H N N 212 HIS HXT H N N 213 ILE N N N N 214 ILE CA C N S 215 ILE C C N N 216 ILE O O N N 217 ILE CB C N S 218 ILE CG1 C N N 219 ILE CG2 C N N 220 ILE CD1 C N N 221 ILE OXT O N N 222 ILE H H N N 223 ILE H2 H N N 224 ILE HA H N N 225 ILE HB H N N 226 ILE HG12 H N N 227 ILE HG13 H N N 228 ILE HG21 H N N 229 ILE HG22 H N N 230 ILE HG23 H N N 231 ILE HD11 H N N 232 ILE HD12 H N N 233 ILE HD13 H N N 234 ILE HXT H N N 235 LEU N N N N 236 LEU CA C N S 237 LEU C C N N 238 LEU O O N N 239 LEU CB C N N 240 LEU CG C N N 241 LEU CD1 C N N 242 LEU CD2 C N N 243 LEU OXT O N N 244 LEU H H N N 245 LEU H2 H N N 246 LEU HA H N N 247 LEU HB2 H N N 248 LEU HB3 H N N 249 LEU HG H N N 250 LEU HD11 H N N 251 LEU HD12 H N N 252 LEU HD13 H N N 253 LEU HD21 H N N 254 LEU HD22 H N N 255 LEU HD23 H N N 256 LEU HXT H N N 257 LYS N N N N 258 LYS CA C N S 259 LYS C C N N 260 LYS O O N N 261 LYS CB C N N 262 LYS CG C N N 263 LYS CD C N N 264 LYS CE C N N 265 LYS NZ N N N 266 LYS OXT O N N 267 LYS H H N N 268 LYS H2 H N N 269 LYS HA H N N 270 LYS HB2 H N N 271 LYS HB3 H N N 272 LYS HG2 H N N 273 LYS HG3 H N N 274 LYS HD2 H N N 275 LYS HD3 H N N 276 LYS HE2 H N N 277 LYS HE3 H N N 278 LYS HZ1 H N N 279 LYS HZ2 H N N 280 LYS HZ3 H N N 281 LYS HXT H N N 282 MET N N N N 283 MET CA C N S 284 MET C C N N 285 MET O O N N 286 MET CB C N N 287 MET CG C N N 288 MET SD S N N 289 MET CE C N N 290 MET OXT O N N 291 MET H H N N 292 MET H2 H N N 293 MET HA H N N 294 MET HB2 H N N 295 MET HB3 H N N 296 MET HG2 H N N 297 MET HG3 H N N 298 MET HE1 H N N 299 MET HE2 H N N 300 MET HE3 H N N 301 MET HXT H N N 302 PHE N N N N 303 PHE CA C N S 304 PHE C C N N 305 PHE O O N N 306 PHE CB C N N 307 PHE CG C Y N 308 PHE CD1 C Y N 309 PHE CD2 C Y N 310 PHE CE1 C Y N 311 PHE CE2 C Y N 312 PHE CZ C Y N 313 PHE OXT O N N 314 PHE H H N N 315 PHE H2 H N N 316 PHE HA H N N 317 PHE HB2 H N N 318 PHE HB3 H N N 319 PHE HD1 H N N 320 PHE HD2 H N N 321 PHE HE1 H N N 322 PHE HE2 H N N 323 PHE HZ H N N 324 PHE HXT H N N 325 PRO N N N N 326 PRO CA C N S 327 PRO C C N N 328 PRO O O N N 329 PRO CB C N N 330 PRO CG C N N 331 PRO CD C N N 332 PRO OXT O N N 333 PRO H H N N 334 PRO HA H N N 335 PRO HB2 H N N 336 PRO HB3 H N N 337 PRO HG2 H N N 338 PRO HG3 H N N 339 PRO HD2 H N N 340 PRO HD3 H N N 341 PRO HXT H N N 342 SER N N N N 343 SER CA C N S 344 SER C C N N 345 SER O O N N 346 SER CB C N N 347 SER OG O N N 348 SER OXT O N N 349 SER H H N N 350 SER H2 H N N 351 SER HA H N N 352 SER HB2 H N N 353 SER HB3 H N N 354 SER HG H N N 355 SER HXT H N N 356 THR N N N N 357 THR CA C N S 358 THR C C N N 359 THR O O N N 360 THR CB C N R 361 THR OG1 O N N 362 THR CG2 C N N 363 THR OXT O N N 364 THR H H N N 365 THR H2 H N N 366 THR HA H N N 367 THR HB H N N 368 THR HG1 H N N 369 THR HG21 H N N 370 THR HG22 H N N 371 THR HG23 H N N 372 THR HXT H N N 373 VAL N N N N 374 VAL CA C N S 375 VAL C C N N 376 VAL O O N N 377 VAL CB C N N 378 VAL CG1 C N N 379 VAL CG2 C N N 380 VAL OXT O N N 381 VAL H H N N 382 VAL H2 H N N 383 VAL HA H N N 384 VAL HB H N N 385 VAL HG11 H N N 386 VAL HG12 H N N 387 VAL HG13 H N N 388 VAL HG21 H N N 389 VAL HG22 H N N 390 VAL HG23 H N N 391 VAL HXT H N N 392 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DC OP3 P sing N N 70 DC OP3 HOP3 sing N N 71 DC P OP1 doub N N 72 DC P OP2 sing N N 73 DC P "O5'" sing N N 74 DC OP2 HOP2 sing N N 75 DC "O5'" "C5'" sing N N 76 DC "C5'" "C4'" sing N N 77 DC "C5'" "H5'" sing N N 78 DC "C5'" "H5''" sing N N 79 DC "C4'" "O4'" sing N N 80 DC "C4'" "C3'" sing N N 81 DC "C4'" "H4'" sing N N 82 DC "O4'" "C1'" sing N N 83 DC "C3'" "O3'" sing N N 84 DC "C3'" "C2'" sing N N 85 DC "C3'" "H3'" sing N N 86 DC "O3'" "HO3'" sing N N 87 DC "C2'" "C1'" sing N N 88 DC "C2'" "H2'" sing N N 89 DC "C2'" "H2''" sing N N 90 DC "C1'" N1 sing N N 91 DC "C1'" "H1'" sing N N 92 DC N1 C2 sing N N 93 DC N1 C6 sing N N 94 DC C2 O2 doub N N 95 DC C2 N3 sing N N 96 DC N3 C4 doub N N 97 DC C4 N4 sing N N 98 DC C4 C5 sing N N 99 DC N4 H41 sing N N 100 DC N4 H42 sing N N 101 DC C5 C6 doub N N 102 DC C5 H5 sing N N 103 DC C6 H6 sing N N 104 DT OP3 P sing N N 105 DT OP3 HOP3 sing N N 106 DT P OP1 doub N N 107 DT P OP2 sing N N 108 DT P "O5'" sing N N 109 DT OP2 HOP2 sing N N 110 DT "O5'" "C5'" sing N N 111 DT "C5'" "C4'" sing N N 112 DT "C5'" "H5'" sing N N 113 DT "C5'" "H5''" sing N N 114 DT "C4'" "O4'" sing N N 115 DT "C4'" "C3'" sing N N 116 DT "C4'" "H4'" sing N N 117 DT "O4'" "C1'" sing N N 118 DT "C3'" "O3'" sing N N 119 DT "C3'" "C2'" sing N N 120 DT "C3'" "H3'" sing N N 121 DT "O3'" "HO3'" sing N N 122 DT "C2'" "C1'" sing N N 123 DT "C2'" "H2'" sing N N 124 DT "C2'" "H2''" sing N N 125 DT "C1'" N1 sing N N 126 DT "C1'" "H1'" sing N N 127 DT N1 C2 sing N N 128 DT N1 C6 sing N N 129 DT C2 O2 doub N N 130 DT C2 N3 sing N N 131 DT N3 C4 sing N N 132 DT N3 H3 sing N N 133 DT C4 O4 doub N N 134 DT C4 C5 sing N N 135 DT C5 C7 sing N N 136 DT C5 C6 doub N N 137 DT C7 H71 sing N N 138 DT C7 H72 sing N N 139 DT C7 H73 sing N N 140 DT C6 H6 sing N N 141 GLN N CA sing N N 142 GLN N H sing N N 143 GLN N H2 sing N N 144 GLN CA C sing N N 145 GLN CA CB sing N N 146 GLN CA HA sing N N 147 GLN C O doub N N 148 GLN C OXT sing N N 149 GLN CB CG sing N N 150 GLN CB HB2 sing N N 151 GLN CB HB3 sing N N 152 GLN CG CD sing N N 153 GLN CG HG2 sing N N 154 GLN CG HG3 sing N N 155 GLN CD OE1 doub N N 156 GLN CD NE2 sing N N 157 GLN NE2 HE21 sing N N 158 GLN NE2 HE22 sing N N 159 GLN OXT HXT sing N N 160 GLU N CA sing N N 161 GLU N H sing N N 162 GLU N H2 sing N N 163 GLU CA C sing N N 164 GLU CA CB sing N N 165 GLU CA HA sing N N 166 GLU C O doub N N 167 GLU C OXT sing N N 168 GLU CB CG sing N N 169 GLU CB HB2 sing N N 170 GLU CB HB3 sing N N 171 GLU CG CD sing N N 172 GLU CG HG2 sing N N 173 GLU CG HG3 sing N N 174 GLU CD OE1 doub N N 175 GLU CD OE2 sing N N 176 GLU OE2 HE2 sing N N 177 GLU OXT HXT sing N N 178 GLY N CA sing N N 179 GLY N H sing N N 180 GLY N H2 sing N N 181 GLY CA C sing N N 182 GLY CA HA2 sing N N 183 GLY CA HA3 sing N N 184 GLY C O doub N N 185 GLY C OXT sing N N 186 GLY OXT HXT sing N N 187 HIS N CA sing N N 188 HIS N H sing N N 189 HIS N H2 sing N N 190 HIS CA C sing N N 191 HIS CA CB sing N N 192 HIS CA HA sing N N 193 HIS C O doub N N 194 HIS C OXT sing N N 195 HIS CB CG sing N N 196 HIS CB HB2 sing N N 197 HIS CB HB3 sing N N 198 HIS CG ND1 sing Y N 199 HIS CG CD2 doub Y N 200 HIS ND1 CE1 doub Y N 201 HIS ND1 HD1 sing N N 202 HIS CD2 NE2 sing Y N 203 HIS CD2 HD2 sing N N 204 HIS CE1 NE2 sing Y N 205 HIS CE1 HE1 sing N N 206 HIS NE2 HE2 sing N N 207 HIS OXT HXT sing N N 208 ILE N CA sing N N 209 ILE N H sing N N 210 ILE N H2 sing N N 211 ILE CA C sing N N 212 ILE CA CB sing N N 213 ILE CA HA sing N N 214 ILE C O doub N N 215 ILE C OXT sing N N 216 ILE CB CG1 sing N N 217 ILE CB CG2 sing N N 218 ILE CB HB sing N N 219 ILE CG1 CD1 sing N N 220 ILE CG1 HG12 sing N N 221 ILE CG1 HG13 sing N N 222 ILE CG2 HG21 sing N N 223 ILE CG2 HG22 sing N N 224 ILE CG2 HG23 sing N N 225 ILE CD1 HD11 sing N N 226 ILE CD1 HD12 sing N N 227 ILE CD1 HD13 sing N N 228 ILE OXT HXT sing N N 229 LEU N CA sing N N 230 LEU N H sing N N 231 LEU N H2 sing N N 232 LEU CA C sing N N 233 LEU CA CB sing N N 234 LEU CA HA sing N N 235 LEU C O doub N N 236 LEU C OXT sing N N 237 LEU CB CG sing N N 238 LEU CB HB2 sing N N 239 LEU CB HB3 sing N N 240 LEU CG CD1 sing N N 241 LEU CG CD2 sing N N 242 LEU CG HG sing N N 243 LEU CD1 HD11 sing N N 244 LEU CD1 HD12 sing N N 245 LEU CD1 HD13 sing N N 246 LEU CD2 HD21 sing N N 247 LEU CD2 HD22 sing N N 248 LEU CD2 HD23 sing N N 249 LEU OXT HXT sing N N 250 LYS N CA sing N N 251 LYS N H sing N N 252 LYS N H2 sing N N 253 LYS CA C sing N N 254 LYS CA CB sing N N 255 LYS CA HA sing N N 256 LYS C O doub N N 257 LYS C OXT sing N N 258 LYS CB CG sing N N 259 LYS CB HB2 sing N N 260 LYS CB HB3 sing N N 261 LYS CG CD sing N N 262 LYS CG HG2 sing N N 263 LYS CG HG3 sing N N 264 LYS CD CE sing N N 265 LYS CD HD2 sing N N 266 LYS CD HD3 sing N N 267 LYS CE NZ sing N N 268 LYS CE HE2 sing N N 269 LYS CE HE3 sing N N 270 LYS NZ HZ1 sing N N 271 LYS NZ HZ2 sing N N 272 LYS NZ HZ3 sing N N 273 LYS OXT HXT sing N N 274 MET N CA sing N N 275 MET N H sing N N 276 MET N H2 sing N N 277 MET CA C sing N N 278 MET CA CB sing N N 279 MET CA HA sing N N 280 MET C O doub N N 281 MET C OXT sing N N 282 MET CB CG sing N N 283 MET CB HB2 sing N N 284 MET CB HB3 sing N N 285 MET CG SD sing N N 286 MET CG HG2 sing N N 287 MET CG HG3 sing N N 288 MET SD CE sing N N 289 MET CE HE1 sing N N 290 MET CE HE2 sing N N 291 MET CE HE3 sing N N 292 MET OXT HXT sing N N 293 PHE N CA sing N N 294 PHE N H sing N N 295 PHE N H2 sing N N 296 PHE CA C sing N N 297 PHE CA CB sing N N 298 PHE CA HA sing N N 299 PHE C O doub N N 300 PHE C OXT sing N N 301 PHE CB CG sing N N 302 PHE CB HB2 sing N N 303 PHE CB HB3 sing N N 304 PHE CG CD1 doub Y N 305 PHE CG CD2 sing Y N 306 PHE CD1 CE1 sing Y N 307 PHE CD1 HD1 sing N N 308 PHE CD2 CE2 doub Y N 309 PHE CD2 HD2 sing N N 310 PHE CE1 CZ doub Y N 311 PHE CE1 HE1 sing N N 312 PHE CE2 CZ sing Y N 313 PHE CE2 HE2 sing N N 314 PHE CZ HZ sing N N 315 PHE OXT HXT sing N N 316 PRO N CA sing N N 317 PRO N CD sing N N 318 PRO N H sing N N 319 PRO CA C sing N N 320 PRO CA CB sing N N 321 PRO CA HA sing N N 322 PRO C O doub N N 323 PRO C OXT sing N N 324 PRO CB CG sing N N 325 PRO CB HB2 sing N N 326 PRO CB HB3 sing N N 327 PRO CG CD sing N N 328 PRO CG HG2 sing N N 329 PRO CG HG3 sing N N 330 PRO CD HD2 sing N N 331 PRO CD HD3 sing N N 332 PRO OXT HXT sing N N 333 SER N CA sing N N 334 SER N H sing N N 335 SER N H2 sing N N 336 SER CA C sing N N 337 SER CA CB sing N N 338 SER CA HA sing N N 339 SER C O doub N N 340 SER C OXT sing N N 341 SER CB OG sing N N 342 SER CB HB2 sing N N 343 SER CB HB3 sing N N 344 SER OG HG sing N N 345 SER OXT HXT sing N N 346 THR N CA sing N N 347 THR N H sing N N 348 THR N H2 sing N N 349 THR CA C sing N N 350 THR CA CB sing N N 351 THR CA HA sing N N 352 THR C O doub N N 353 THR C OXT sing N N 354 THR CB OG1 sing N N 355 THR CB CG2 sing N N 356 THR CB HB sing N N 357 THR OG1 HG1 sing N N 358 THR CG2 HG21 sing N N 359 THR CG2 HG22 sing N N 360 THR CG2 HG23 sing N N 361 THR OXT HXT sing N N 362 VAL N CA sing N N 363 VAL N H sing N N 364 VAL N H2 sing N N 365 VAL CA C sing N N 366 VAL CA CB sing N N 367 VAL CA HA sing N N 368 VAL C O doub N N 369 VAL C OXT sing N N 370 VAL CB CG1 sing N N 371 VAL CB CG2 sing N N 372 VAL CB HB sing N N 373 VAL CG1 HG11 sing N N 374 VAL CG1 HG12 sing N N 375 VAL CG1 HG13 sing N N 376 VAL CG2 HG21 sing N N 377 VAL CG2 HG22 sing N N 378 VAL CG2 HG23 sing N N 379 VAL OXT HXT sing N N 380 # _ndb_struct_conf_na.entry_id 4YEY _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 5 1_555 C DC 10 1_555 1.239 -1.153 -0.578 19.886 -1.433 0.186 1 B_DC10:DC110_D B 10 ? D 110 ? ? ? 1 B DC 8 1_555 C DC 7 1_555 -2.374 -1.596 -0.459 6.681 -5.394 -12.185 2 B_DC13:DC107_D B 13 ? D 107 ? ? ? 1 B DC 12 1_555 C DC 3 1_555 -1.094 -1.338 0.177 -0.109 -11.969 -4.485 3 B_DC17:DC103_D B 17 ? D 103 ? ? ? 1 B DC 14 1_555 C DC 1 1_555 -1.137 -1.127 0.682 -2.072 -1.824 -11.549 4 B_DC19:DC101_D B 19 ? D 101 ? ? ? # _ndb_struct_na_base_pair_step.model_number 1 _ndb_struct_na_base_pair_step.i_label_asym_id_1 B _ndb_struct_na_base_pair_step.i_label_comp_id_1 DC _ndb_struct_na_base_pair_step.i_label_seq_id_1 12 _ndb_struct_na_base_pair_step.i_symmetry_1 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_1 C _ndb_struct_na_base_pair_step.j_label_comp_id_1 DC _ndb_struct_na_base_pair_step.j_label_seq_id_1 3 _ndb_struct_na_base_pair_step.j_symmetry_1 1_555 _ndb_struct_na_base_pair_step.i_label_asym_id_2 B _ndb_struct_na_base_pair_step.i_label_comp_id_2 DC _ndb_struct_na_base_pair_step.i_label_seq_id_2 14 _ndb_struct_na_base_pair_step.i_symmetry_2 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_2 C _ndb_struct_na_base_pair_step.j_label_comp_id_2 DC _ndb_struct_na_base_pair_step.j_label_seq_id_2 1 _ndb_struct_na_base_pair_step.j_symmetry_2 1_555 _ndb_struct_na_base_pair_step.shift -0.006 _ndb_struct_na_base_pair_step.slide -0.490 _ndb_struct_na_base_pair_step.rise 6.815 _ndb_struct_na_base_pair_step.tilt 1.927 _ndb_struct_na_base_pair_step.roll -5.188 _ndb_struct_na_base_pair_step.twist 74.880 _ndb_struct_na_base_pair_step.x_displacement -0.072 _ndb_struct_na_base_pair_step.y_displacement 0.128 _ndb_struct_na_base_pair_step.helical_rise 6.831 _ndb_struct_na_base_pair_step.inclination -4.262 _ndb_struct_na_base_pair_step.tip -1.583 _ndb_struct_na_base_pair_step.helical_twist 75.055 _ndb_struct_na_base_pair_step.step_number 1 _ndb_struct_na_base_pair_step.step_name BB_DC17DC19:DC101DC103_DD _ndb_struct_na_base_pair_step.i_auth_asym_id_1 B _ndb_struct_na_base_pair_step.i_auth_seq_id_1 17 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_1 D _ndb_struct_na_base_pair_step.j_auth_seq_id_1 103 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.i_auth_asym_id_2 B _ndb_struct_na_base_pair_step.i_auth_seq_id_2 19 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_2 D _ndb_struct_na_base_pair_step.j_auth_seq_id_2 101 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1MUL _pdbx_initial_refinement_model.details ? #