HEADER DNA BINDING PROTEIN/DNA 24-FEB-15 4YF0 TITLE HU38-19BP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING PROTEIN HU-ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HU-2,NS2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SYNTHETIC DNA STRAND; COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: SYNTHETIC DNA STRAND; COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: HUPA, B4000, JW3964; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 10 ORGANISM_TAXID: 562; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 14 ORGANISM_TAXID: 562 KEYWDS HU-DNA, TRANSCRIPTION, PATHOGENICITY, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.HAMMEL,F.E.REYES,R.PARPANA,J.A.TAINER,S.ADHYA,D.AMLANJYOTI REVDAT 3 27-SEP-23 4YF0 1 REMARK REVDAT 2 20-FEB-19 4YF0 1 JRNL REMARK REVDAT 1 29-JUN-16 4YF0 0 JRNL AUTH M.HAMMEL,D.AMLANJYOTI,F.E.REYES,J.H.CHEN,R.PARPANA,H.Y.TANG, JRNL AUTH 2 C.A.LARABELL,J.A.TAINER,S.ADHYA JRNL TITL HU MULTIMERIZATION SHIFT CONTROLS NUCLEOID COMPACTION. JRNL REF SCI ADV V. 2 00650 2016 JRNL REFN ESSN 2375-2548 JRNL PMID 27482541 JRNL DOI 10.1126/SCIADV.1600650 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 9783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 469 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.12 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2688 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2705 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2550 REMARK 3 BIN R VALUE (WORKING SET) : 0.2702 REMARK 3 BIN FREE R VALUE : 0.2758 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.13 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 138 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1215 REMARK 3 NUCLEIC ACID ATOMS : 455 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 101.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.07660 REMARK 3 B22 (A**2) : 5.07660 REMARK 3 B33 (A**2) : -10.15330 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.664 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.575 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.312 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.502 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.303 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1724 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2406 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 555 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 31 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 197 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1724 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 243 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1761 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.69 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.67 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 11.4421 -16.5861 20.1607 REMARK 3 T TENSOR REMARK 3 T11: 0.0018 T22: -0.1027 REMARK 3 T33: 0.0496 T12: 0.2558 REMARK 3 T13: -0.2402 T23: -0.1920 REMARK 3 L TENSOR REMARK 3 L11: 4.8828 L22: 2.3601 REMARK 3 L33: 8.9290 L12: -1.3144 REMARK 3 L13: 1.7234 L23: 1.2916 REMARK 3 S TENSOR REMARK 3 S11: 0.4405 S12: 0.0656 S13: -0.3926 REMARK 3 S21: -0.2885 S22: 0.2953 S23: -0.0590 REMARK 3 S31: 0.9513 S32: 0.5292 S33: -0.7358 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 16.2586 -13.6941 22.9912 REMARK 3 T TENSOR REMARK 3 T11: -0.1003 T22: -0.0524 REMARK 3 T33: -0.1121 T12: 0.1724 REMARK 3 T13: -0.1372 T23: -0.1529 REMARK 3 L TENSOR REMARK 3 L11: 2.7740 L22: 3.3728 REMARK 3 L33: 1.8106 L12: -0.5452 REMARK 3 L13: -0.0155 L23: -0.5222 REMARK 3 S TENSOR REMARK 3 S11: 0.2221 S12: -0.0786 S13: 0.0758 REMARK 3 S21: -0.3140 S22: 0.0579 S23: -0.0250 REMARK 3 S31: 0.0733 S32: 0.6219 S33: -0.2801 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 31.9253 -24.9790 13.2763 REMARK 3 T TENSOR REMARK 3 T11: 0.4972 T22: -0.2357 REMARK 3 T33: -0.2964 T12: 0.0824 REMARK 3 T13: -0.0916 T23: -0.4039 REMARK 3 L TENSOR REMARK 3 L11: 5.8835 L22: -0.1069 REMARK 3 L33: 16.6309 L12: -2.2390 REMARK 3 L13: 1.7278 L23: 3.8975 REMARK 3 S TENSOR REMARK 3 S11: -0.2276 S12: 0.6512 S13: 0.4607 REMARK 3 S21: -0.1054 S22: -0.4692 S23: -0.3408 REMARK 3 S31: -0.1828 S32: -0.0450 S33: 0.6968 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): -6.1481 -9.2701 36.7483 REMARK 3 T TENSOR REMARK 3 T11: -0.1359 T22: -0.1346 REMARK 3 T33: -0.0654 T12: 0.1232 REMARK 3 T13: -0.1397 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 10.3785 L22: 4.3145 REMARK 3 L33: 7.9258 L12: 0.9110 REMARK 3 L13: -7.4469 L23: 2.4218 REMARK 3 S TENSOR REMARK 3 S11: -0.1221 S12: -0.4552 S13: 0.0704 REMARK 3 S21: 0.2391 S22: 0.4693 S23: 0.3783 REMARK 3 S31: 0.5375 S32: -0.3025 S33: -0.3473 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ASYMMETRIC UNIT OF THE CRYSTAL REMARK 3 CONTAINS MULTIPLE, OUT-OF-REGISTER DUPLEX POSITIONS, SUCH THAT REMARK 3 BACKBONES SUPERIMPOSE, BUT BASE IDENTITY DIFFERS. THE DENSITY IS REMARK 3 AN AVERAGE OF ALL NUCLEOTIDES, AND THE DNA CHAIN WAS BUILT REMARK 3 ACCORDINGLY. REMARK 4 REMARK 4 4YF0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207347. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 93.15 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : Q315R REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9847 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 110.103 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 39.20 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 31.76 REMARK 200 R MERGE FOR SHELL (I) : 1.91300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.199 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1MUL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 5.8, 30% PEG MME 550, REMARK 280 0.05 M CACL2, PH 6.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.40333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 146.80667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.10500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 183.50833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.70167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.40333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 146.80667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 183.50833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 110.10500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.70167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 73.40333 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 3 0.500000 0.866025 0.000000 37.44500 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 -64.85664 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 36.70167 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 0 REMARK 465 THR A 59 REMARK 465 GLY A 60 REMARK 465 ARG A 61 REMARK 465 ASN A 62 REMARK 465 PRO A 63 REMARK 465 GLN A 64 REMARK 465 THR A 65 REMARK 465 GLY A 66 REMARK 465 LYS A 67 REMARK 465 GLU A 68 REMARK 465 ILE A 69 REMARK 465 LYS A 70 REMARK 465 ILE A 71 REMARK 465 ALA A 72 REMARK 465 ARG B 61 REMARK 465 ASN B 62 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 90 CD CE NZ REMARK 470 LYS B 13 CD CE NZ REMARK 470 LYS B 18 CE NZ REMARK 470 LYS B 51 CE NZ REMARK 470 THR B 65 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 74 C - N - CA ANGL. DEV. = 18.7 DEGREES REMARK 500 DT D 4 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT D 10 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 54 55.42 -95.69 REMARK 500 ARG A 55 89.09 -65.37 REMARK 500 ALA A 74 123.17 164.35 REMARK 500 MET B 1 114.18 54.45 REMARK 500 ARG B 58 -151.16 -83.35 REMARK 500 THR B 65 20.87 -70.05 REMARK 500 LYS B 70 -74.76 -76.50 REMARK 500 ILE B 71 100.03 69.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YEW RELATED DB: PDB REMARK 900 RELATED ID: 4YEX RELATED DB: PDB REMARK 900 RELATED ID: 4YEY RELATED DB: PDB REMARK 900 RELATED ID: 4YFH RELATED DB: PDB REMARK 900 RELATED ID: 4YFT RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 DNA SAMPLE SEQUENCE USED IN EXPERIMENT IS 5'-TTCAATTGTTGTTAACTTG-3' REMARK 999 . BUT THE ASYMMETRIC UNIT CONTAINS MULTIPLE, OUT-OF-REGISTER DUPLEX REMARK 999 POSITIONS, SO THE DNA CHAIN IS MODELED ACCORDING TO AVERAGED REMARK 999 DENSITY. DBREF 4YF0 A 1 90 UNP P0ACF2 DBHA_ECO57 1 90 DBREF 4YF0 B 1 90 UNP P0ACF2 DBHA_ECO57 1 90 DBREF 4YF0 C 1 11 PDB 4YF0 4YF0 1 11 DBREF 4YF0 D 1 12 PDB 4YF0 4YF0 1 12 SEQADV 4YF0 HIS A 0 UNP P0ACF2 EXPRESSION TAG SEQADV 4YF0 LYS A 38 UNP P0ACF2 GLU 38 ENGINEERED MUTATION SEQADV 4YF0 LEU A 42 UNP P0ACF2 VAL 42 ENGINEERED MUTATION SEQADV 4YF0 HIS B 0 UNP P0ACF2 EXPRESSION TAG SEQADV 4YF0 LYS B 38 UNP P0ACF2 GLU 38 ENGINEERED MUTATION SEQADV 4YF0 LEU B 42 UNP P0ACF2 VAL 42 ENGINEERED MUTATION SEQRES 1 A 91 HIS MET ASN LYS THR GLN LEU ILE ASP VAL ILE ALA GLU SEQRES 2 A 91 LYS ALA GLU LEU SER LYS THR GLN ALA LYS ALA ALA LEU SEQRES 3 A 91 GLU SER THR LEU ALA ALA ILE THR GLU SER LEU LYS LYS SEQRES 4 A 91 GLY ASP ALA LEU GLN LEU VAL GLY PHE GLY THR PHE LYS SEQRES 5 A 91 VAL ASN HIS ARG ALA GLU ARG THR GLY ARG ASN PRO GLN SEQRES 6 A 91 THR GLY LYS GLU ILE LYS ILE ALA ALA ALA ASN VAL PRO SEQRES 7 A 91 ALA PHE VAL SER GLY LYS ALA LEU LYS ASP ALA VAL LYS SEQRES 1 B 91 HIS MET ASN LYS THR GLN LEU ILE ASP VAL ILE ALA GLU SEQRES 2 B 91 LYS ALA GLU LEU SER LYS THR GLN ALA LYS ALA ALA LEU SEQRES 3 B 91 GLU SER THR LEU ALA ALA ILE THR GLU SER LEU LYS LYS SEQRES 4 B 91 GLY ASP ALA LEU GLN LEU VAL GLY PHE GLY THR PHE LYS SEQRES 5 B 91 VAL ASN HIS ARG ALA GLU ARG THR GLY ARG ASN PRO GLN SEQRES 6 B 91 THR GLY LYS GLU ILE LYS ILE ALA ALA ALA ASN VAL PRO SEQRES 7 B 91 ALA PHE VAL SER GLY LYS ALA LEU LYS ASP ALA VAL LYS SEQRES 1 C 11 DC DC DC DT DT DT DT DC DC DC DC SEQRES 1 D 12 DT DT DT DT DT DT DA DA DT DT DT DT HELIX 1 AA1 ASN A 2 ALA A 14 1 13 HELIX 2 AA2 SER A 17 LYS A 38 1 22 HELIX 3 AA3 GLY A 82 ALA A 88 1 7 HELIX 4 AA4 ASN B 2 ALA B 14 1 13 HELIX 5 AA5 SER B 17 LYS B 38 1 22 HELIX 6 AA6 GLY B 82 ALA B 88 1 7 SHEET 1 AA1 3 LEU A 42 LEU A 44 0 SHEET 2 AA1 3 GLY A 48 ASN A 53 -1 O PHE A 50 N LEU A 42 SHEET 3 AA1 3 VAL A 76 SER A 81 -1 O VAL A 80 N THR A 49 SHEET 1 AA2 3 LEU B 42 LEU B 44 0 SHEET 2 AA2 3 GLY B 48 ARG B 55 -1 O PHE B 50 N LEU B 42 SHEET 3 AA2 3 ALA B 74 SER B 81 -1 O VAL B 80 N THR B 49 CISPEP 1 ALA A 73 ALA A 74 0 -15.72 CISPEP 2 PRO B 63 GLN B 64 0 -2.47 CRYST1 74.890 74.890 220.210 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013353 0.007709 0.000000 0.00000 SCALE2 0.000000 0.015419 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004541 0.00000