HEADER DNA BINDING PROTEIN/DNA 24-FEB-15 4YF0
TITLE HU38-19BP
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DNA-BINDING PROTEIN HU-ALPHA;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: HU-2,NS2;
COMPND 5 ENGINEERED: YES;
COMPND 6 MOL_ID: 2;
COMPND 7 MOLECULE: SYNTHETIC DNA STRAND;
COMPND 8 CHAIN: C;
COMPND 9 ENGINEERED: YES;
COMPND 10 MOL_ID: 3;
COMPND 11 MOLECULE: SYNTHETIC DNA STRAND;
COMPND 12 CHAIN: D;
COMPND 13 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;
SOURCE 3 ORGANISM_TAXID: 562;
SOURCE 4 GENE: HUPA, B4000, JW3964;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 MOL_ID: 2;
SOURCE 8 SYNTHETIC: YES;
SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;
SOURCE 10 ORGANISM_TAXID: 562;
SOURCE 11 MOL_ID: 3;
SOURCE 12 SYNTHETIC: YES;
SOURCE 13 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;
SOURCE 14 ORGANISM_TAXID: 562
KEYWDS HU-DNA, TRANSCRIPTION, PATHOGENICITY, DNA BINDING PROTEIN-DNA COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR M.HAMMEL,F.E.REYES,R.PARPANA,J.A.TAINER,S.ADHYA,D.AMLANJYOTI
REVDAT 3 27-SEP-23 4YF0 1 REMARK
REVDAT 2 20-FEB-19 4YF0 1 JRNL REMARK
REVDAT 1 29-JUN-16 4YF0 0
JRNL AUTH M.HAMMEL,D.AMLANJYOTI,F.E.REYES,J.H.CHEN,R.PARPANA,H.Y.TANG,
JRNL AUTH 2 C.A.LARABELL,J.A.TAINER,S.ADHYA
JRNL TITL HU MULTIMERIZATION SHIFT CONTROLS NUCLEOID COMPACTION.
JRNL REF SCI ADV V. 2 00650 2016
JRNL REFN ESSN 2375-2548
JRNL PMID 27482541
JRNL DOI 10.1126/SCIADV.1600650
REMARK 2
REMARK 2 RESOLUTION. 2.79 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.10.0
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.86
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 9783
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.248
REMARK 3 R VALUE (WORKING SET) : 0.247
REMARK 3 FREE R VALUE : 0.265
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790
REMARK 3 FREE R VALUE TEST SET COUNT : 469
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 5
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.12
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2688
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2705
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2550
REMARK 3 BIN R VALUE (WORKING SET) : 0.2702
REMARK 3 BIN FREE R VALUE : 0.2758
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.13
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 138
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1215
REMARK 3 NUCLEIC ACID ATOMS : 455
REMARK 3 HETEROGEN ATOMS : 0
REMARK 3 SOLVENT ATOMS : 0
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 101.8
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 5.07660
REMARK 3 B22 (A**2) : 5.07660
REMARK 3 B33 (A**2) : -10.15330
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.664
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.575
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.312
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.502
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.303
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 1724 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 2406 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 555 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 31 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 197 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 1724 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 243 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 1761 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.20
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.69
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.67
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 4
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 11.4421 -16.5861 20.1607
REMARK 3 T TENSOR
REMARK 3 T11: 0.0018 T22: -0.1027
REMARK 3 T33: 0.0496 T12: 0.2558
REMARK 3 T13: -0.2402 T23: -0.1920
REMARK 3 L TENSOR
REMARK 3 L11: 4.8828 L22: 2.3601
REMARK 3 L33: 8.9290 L12: -1.3144
REMARK 3 L13: 1.7234 L23: 1.2916
REMARK 3 S TENSOR
REMARK 3 S11: 0.4405 S12: 0.0656 S13: -0.3926
REMARK 3 S21: -0.2885 S22: 0.2953 S23: -0.0590
REMARK 3 S31: 0.9513 S32: 0.5292 S33: -0.7358
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 16.2586 -13.6941 22.9912
REMARK 3 T TENSOR
REMARK 3 T11: -0.1003 T22: -0.0524
REMARK 3 T33: -0.1121 T12: 0.1724
REMARK 3 T13: -0.1372 T23: -0.1529
REMARK 3 L TENSOR
REMARK 3 L11: 2.7740 L22: 3.3728
REMARK 3 L33: 1.8106 L12: -0.5452
REMARK 3 L13: -0.0155 L23: -0.5222
REMARK 3 S TENSOR
REMARK 3 S11: 0.2221 S12: -0.0786 S13: 0.0758
REMARK 3 S21: -0.3140 S22: 0.0579 S23: -0.0250
REMARK 3 S31: 0.0733 S32: 0.6219 S33: -0.2801
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: { C|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 31.9253 -24.9790 13.2763
REMARK 3 T TENSOR
REMARK 3 T11: 0.4972 T22: -0.2357
REMARK 3 T33: -0.2964 T12: 0.0824
REMARK 3 T13: -0.0916 T23: -0.4039
REMARK 3 L TENSOR
REMARK 3 L11: 5.8835 L22: -0.1069
REMARK 3 L33: 16.6309 L12: -2.2390
REMARK 3 L13: 1.7278 L23: 3.8975
REMARK 3 S TENSOR
REMARK 3 S11: -0.2276 S12: 0.6512 S13: 0.4607
REMARK 3 S21: -0.1054 S22: -0.4692 S23: -0.3408
REMARK 3 S31: -0.1828 S32: -0.0450 S33: 0.6968
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: { D|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -6.1481 -9.2701 36.7483
REMARK 3 T TENSOR
REMARK 3 T11: -0.1359 T22: -0.1346
REMARK 3 T33: -0.0654 T12: 0.1232
REMARK 3 T13: -0.1397 T23: 0.0240
REMARK 3 L TENSOR
REMARK 3 L11: 10.3785 L22: 4.3145
REMARK 3 L33: 7.9258 L12: 0.9110
REMARK 3 L13: -7.4469 L23: 2.4218
REMARK 3 S TENSOR
REMARK 3 S11: -0.1221 S12: -0.4552 S13: 0.0704
REMARK 3 S21: 0.2391 S22: 0.4693 S23: 0.3783
REMARK 3 S31: 0.5375 S32: -0.3025 S33: -0.3473
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: THE ASYMMETRIC UNIT OF THE CRYSTAL
REMARK 3 CONTAINS MULTIPLE, OUT-OF-REGISTER DUPLEX POSITIONS, SUCH THAT
REMARK 3 BACKBONES SUPERIMPOSE, BUT BASE IDENTITY DIFFERS. THE DENSITY IS
REMARK 3 AN AVERAGE OF ALL NUCLEOTIDES, AND THE DNA CHAIN WAS BUILT
REMARK 3 ACCORDINGLY.
REMARK 4
REMARK 4 4YF0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-15.
REMARK 100 THE DEPOSITION ID IS D_1000207347.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 25-JAN-13
REMARK 200 TEMPERATURE (KELVIN) : 93.15
REMARK 200 PH : 6.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ALS
REMARK 200 BEAMLINE : 12.3.1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : Q315R
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9847
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790
REMARK 200 RESOLUTION RANGE LOW (A) : 110.103
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 39.20
REMARK 200 R MERGE (I) : 0.10600
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 35.1000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 31.76
REMARK 200 R MERGE FOR SHELL (I) : 1.91300
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.199
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: 1MUL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 66.10
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 5.8, 30% PEG MME 550,
REMARK 280 0.05 M CACL2, PH 6.5, VAPOR DIFFUSION, TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+5/6
REMARK 290 6555 X-Y,X,Z+1/6
REMARK 290 7555 Y,X,-Z+1/3
REMARK 290 8555 X-Y,-Y,-Z
REMARK 290 9555 -X,-X+Y,-Z+2/3
REMARK 290 10555 -Y,-X,-Z+5/6
REMARK 290 11555 -X+Y,Y,-Z+1/2
REMARK 290 12555 X,X-Y,-Z+1/6
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.40333
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 146.80667
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.10500
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 183.50833
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.70167
REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.40333
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 146.80667
REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 183.50833
REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 110.10500
REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.70167
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D
REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000
REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 73.40333
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D
REMARK 350 BIOMT1 3 0.500000 0.866025 0.000000 37.44500
REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 -64.85664
REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 36.70167
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 HIS A 0
REMARK 465 THR A 59
REMARK 465 GLY A 60
REMARK 465 ARG A 61
REMARK 465 ASN A 62
REMARK 465 PRO A 63
REMARK 465 GLN A 64
REMARK 465 THR A 65
REMARK 465 GLY A 66
REMARK 465 LYS A 67
REMARK 465 GLU A 68
REMARK 465 ILE A 69
REMARK 465 LYS A 70
REMARK 465 ILE A 71
REMARK 465 ALA A 72
REMARK 465 ARG B 61
REMARK 465 ASN B 62
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 90 CD CE NZ
REMARK 470 LYS B 13 CD CE NZ
REMARK 470 LYS B 18 CE NZ
REMARK 470 LYS B 51 CE NZ
REMARK 470 THR B 65 OG1 CG2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ALA A 74 C - N - CA ANGL. DEV. = 18.7 DEGREES
REMARK 500 DT D 4 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES
REMARK 500 DT D 10 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 HIS A 54 55.42 -95.69
REMARK 500 ARG A 55 89.09 -65.37
REMARK 500 ALA A 74 123.17 164.35
REMARK 500 MET B 1 114.18 54.45
REMARK 500 ARG B 58 -151.16 -83.35
REMARK 500 THR B 65 20.87 -70.05
REMARK 500 LYS B 70 -74.76 -76.50
REMARK 500 ILE B 71 100.03 69.13
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4YEW RELATED DB: PDB
REMARK 900 RELATED ID: 4YEX RELATED DB: PDB
REMARK 900 RELATED ID: 4YEY RELATED DB: PDB
REMARK 900 RELATED ID: 4YFH RELATED DB: PDB
REMARK 900 RELATED ID: 4YFT RELATED DB: PDB
REMARK 999
REMARK 999 SEQUENCE
REMARK 999 DNA SAMPLE SEQUENCE USED IN EXPERIMENT IS 5'-TTCAATTGTTGTTAACTTG-3'
REMARK 999 . BUT THE ASYMMETRIC UNIT CONTAINS MULTIPLE, OUT-OF-REGISTER DUPLEX
REMARK 999 POSITIONS, SO THE DNA CHAIN IS MODELED ACCORDING TO AVERAGED
REMARK 999 DENSITY.
DBREF 4YF0 A 1 90 UNP P0ACF2 DBHA_ECO57 1 90
DBREF 4YF0 B 1 90 UNP P0ACF2 DBHA_ECO57 1 90
DBREF 4YF0 C 1 11 PDB 4YF0 4YF0 1 11
DBREF 4YF0 D 1 12 PDB 4YF0 4YF0 1 12
SEQADV 4YF0 HIS A 0 UNP P0ACF2 EXPRESSION TAG
SEQADV 4YF0 LYS A 38 UNP P0ACF2 GLU 38 ENGINEERED MUTATION
SEQADV 4YF0 LEU A 42 UNP P0ACF2 VAL 42 ENGINEERED MUTATION
SEQADV 4YF0 HIS B 0 UNP P0ACF2 EXPRESSION TAG
SEQADV 4YF0 LYS B 38 UNP P0ACF2 GLU 38 ENGINEERED MUTATION
SEQADV 4YF0 LEU B 42 UNP P0ACF2 VAL 42 ENGINEERED MUTATION
SEQRES 1 A 91 HIS MET ASN LYS THR GLN LEU ILE ASP VAL ILE ALA GLU
SEQRES 2 A 91 LYS ALA GLU LEU SER LYS THR GLN ALA LYS ALA ALA LEU
SEQRES 3 A 91 GLU SER THR LEU ALA ALA ILE THR GLU SER LEU LYS LYS
SEQRES 4 A 91 GLY ASP ALA LEU GLN LEU VAL GLY PHE GLY THR PHE LYS
SEQRES 5 A 91 VAL ASN HIS ARG ALA GLU ARG THR GLY ARG ASN PRO GLN
SEQRES 6 A 91 THR GLY LYS GLU ILE LYS ILE ALA ALA ALA ASN VAL PRO
SEQRES 7 A 91 ALA PHE VAL SER GLY LYS ALA LEU LYS ASP ALA VAL LYS
SEQRES 1 B 91 HIS MET ASN LYS THR GLN LEU ILE ASP VAL ILE ALA GLU
SEQRES 2 B 91 LYS ALA GLU LEU SER LYS THR GLN ALA LYS ALA ALA LEU
SEQRES 3 B 91 GLU SER THR LEU ALA ALA ILE THR GLU SER LEU LYS LYS
SEQRES 4 B 91 GLY ASP ALA LEU GLN LEU VAL GLY PHE GLY THR PHE LYS
SEQRES 5 B 91 VAL ASN HIS ARG ALA GLU ARG THR GLY ARG ASN PRO GLN
SEQRES 6 B 91 THR GLY LYS GLU ILE LYS ILE ALA ALA ALA ASN VAL PRO
SEQRES 7 B 91 ALA PHE VAL SER GLY LYS ALA LEU LYS ASP ALA VAL LYS
SEQRES 1 C 11 DC DC DC DT DT DT DT DC DC DC DC
SEQRES 1 D 12 DT DT DT DT DT DT DA DA DT DT DT DT
HELIX 1 AA1 ASN A 2 ALA A 14 1 13
HELIX 2 AA2 SER A 17 LYS A 38 1 22
HELIX 3 AA3 GLY A 82 ALA A 88 1 7
HELIX 4 AA4 ASN B 2 ALA B 14 1 13
HELIX 5 AA5 SER B 17 LYS B 38 1 22
HELIX 6 AA6 GLY B 82 ALA B 88 1 7
SHEET 1 AA1 3 LEU A 42 LEU A 44 0
SHEET 2 AA1 3 GLY A 48 ASN A 53 -1 O PHE A 50 N LEU A 42
SHEET 3 AA1 3 VAL A 76 SER A 81 -1 O VAL A 80 N THR A 49
SHEET 1 AA2 3 LEU B 42 LEU B 44 0
SHEET 2 AA2 3 GLY B 48 ARG B 55 -1 O PHE B 50 N LEU B 42
SHEET 3 AA2 3 ALA B 74 SER B 81 -1 O VAL B 80 N THR B 49
CISPEP 1 ALA A 73 ALA A 74 0 -15.72
CISPEP 2 PRO B 63 GLN B 64 0 -2.47
CRYST1 74.890 74.890 220.210 90.00 90.00 120.00 P 61 2 2 24
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013353 0.007709 0.000000 0.00000
SCALE2 0.000000 0.015419 0.000000 0.00000
SCALE3 0.000000 0.000000 0.004541 0.00000