HEADER IMMUNE SYSTEM/HYDROLASE 25-FEB-15 4YFD TITLE CRYSTAL STRUCTURE PTP DELTA IG1-FN2 IN COMPLEX WITH IL-1RACP COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-1 RECEPTOR ACCESSORY PROTEIN; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: UNP RESIDUES 21-351; COMPND 5 SYNONYM: IL-1RACP; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE DELTA; COMPND 9 CHAIN: A; COMPND 10 FRAGMENT: UNP RESIDUES 21-511; COMPND 11 SYNONYM: R-PTP-DELTA; COMPND 12 EC: 3.1.3.48; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: IL1RAP; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: FREESTYLE 293-F; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: PTPRD; SOURCE 15 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 16 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: FREESTYLE 293-F KEYWDS TRANS-SYNAPTIC COMPLEX, SYNAPSE ORGANIZER, IMMUNE SYSTEM-HYDROLASE KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.YAMAGATA,S.FUKAI REVDAT 4 08-NOV-23 4YFD 1 HETSYN REVDAT 3 29-JUL-20 4YFD 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 05-FEB-20 4YFD 1 SOURCE REMARK REVDAT 1 06-MAY-15 4YFD 0 JRNL AUTH A.YAMAGATA,T.YOSHIDA,Y.SATO,S.GOTO-ITO,T.UEMURA,A.MAEDA, JRNL AUTH 2 T.SHIROSHIMA,S.IWASAWA-OKAMOTO,H.MORI,M.MISHINA,S.FUKAI JRNL TITL MECHANISMS OF SPLICING-DEPENDENT TRANS-SYNAPTIC ADHESION BY JRNL TITL 2 PTP DELTA-IL1RAPL1/IL-1RACP FOR SYNAPTIC DIFFERENTIATION. JRNL REF NAT COMMUN V. 6 6926 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 25908590 JRNL DOI 10.1038/NCOMMS7926 REMARK 2 REMARK 2 RESOLUTION. 3.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.440 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 25418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.256 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9792 - 6.7602 1.00 2846 164 0.2393 0.2644 REMARK 3 2 6.7602 - 5.3680 0.99 2765 158 0.2476 0.2705 REMARK 3 3 5.3680 - 4.6900 0.99 2759 137 0.1893 0.2276 REMARK 3 4 4.6900 - 4.2615 0.99 2707 146 0.2035 0.2415 REMARK 3 5 4.2615 - 3.9562 0.98 2678 142 0.2337 0.2823 REMARK 3 6 3.9562 - 3.7230 0.97 2653 143 0.2852 0.2998 REMARK 3 7 3.7230 - 3.5366 0.95 2581 137 0.3239 0.3860 REMARK 3 8 3.5366 - 3.3827 0.94 2597 153 0.0000 0.3713 REMARK 3 9 3.3827 - 3.2525 0.92 2540 112 0.3872 0.4168 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6676 REMARK 3 ANGLE : 1.149 9104 REMARK 3 CHIRALITY : 0.048 1037 REMARK 3 PLANARITY : 0.006 1186 REMARK 3 DIHEDRAL : 17.131 2485 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 15.6804 14.5936 31.1471 REMARK 3 T TENSOR REMARK 3 T11: 0.5213 T22: 0.2613 REMARK 3 T33: 0.5726 T12: -0.1218 REMARK 3 T13: -0.0017 T23: -0.0353 REMARK 3 L TENSOR REMARK 3 L11: 0.9261 L22: 0.2729 REMARK 3 L33: 0.1207 L12: -0.2226 REMARK 3 L13: -0.2828 L23: 0.3176 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: 0.0365 S13: -0.1008 REMARK 3 S21: -0.0589 S22: 0.1080 S23: -0.0725 REMARK 3 S31: -0.2196 S32: 0.0344 S33: -0.1270 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YFD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207369. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25436 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11800 REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.43800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2YD6, 2YD9, 4DEP, 3O4O, 4YFE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG3350, 0.1 M AMMONIUM SULFATE REMARK 280 AND 0.1 M TRI-SODIUM CITRATE, PH 5.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 21 REMARK 465 GLU B 22 REMARK 465 ARG B 23 REMARK 465 LYS B 346 REMARK 465 VAL B 347 REMARK 465 LYS B 348 REMARK 465 GLN B 349 REMARK 465 LYS B 350 REMARK 465 VAL B 351 REMARK 465 ALA B 352 REMARK 465 ALA B 353 REMARK 465 HIS B 354 REMARK 465 HIS B 355 REMARK 465 HIS B 356 REMARK 465 HIS B 357 REMARK 465 HIS B 358 REMARK 465 HIS B 359 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 107 O5 NAG B 405 2.05 REMARK 500 OH TYR A 374 OE1 GLU A 397 2.15 REMARK 500 O ASP A 99 OH TYR A 103 2.18 REMARK 500 OH TYR B 58 OE1 GLU A 286 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 104 OG1 THR A 485 2655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 30 69.14 -113.20 REMARK 500 PHE B 53 -60.49 -102.01 REMARK 500 ASN B 90 51.35 39.40 REMARK 500 LYS B 96 -124.53 56.14 REMARK 500 CYS B 122 113.10 -165.08 REMARK 500 CYS B 181 3.64 -158.37 REMARK 500 VAL B 185 -65.54 -120.82 REMARK 500 ASN B 189 2.89 -155.39 REMARK 500 ILE B 201 67.05 29.49 REMARK 500 PRO B 242 158.01 -41.62 REMARK 500 PRO B 265 -177.59 -66.59 REMARK 500 PRO B 289 61.05 -27.70 REMARK 500 THR B 337 -6.78 65.28 REMARK 500 THR A 147 -12.51 82.23 REMARK 500 LEU A 278 56.49 -101.13 REMARK 500 ARG A 302 -83.14 -121.97 REMARK 500 SER A 313 -163.81 -105.58 REMARK 500 PRO A 373 151.40 -49.02 REMARK 500 ALA A 479 -169.90 -73.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YFC RELATED DB: PDB REMARK 900 RELATED ID: 4YFE RELATED DB: PDB REMARK 900 RELATED ID: 4YFG RELATED DB: PDB DBREF 4YFD B 21 351 UNP Q61730 IL1AP_MOUSE 21 351 DBREF 4YFD A 28 518 UNP Q64487 PTPRD_MOUSE 21 511 SEQADV 4YFD ALA B 352 UNP Q61730 EXPRESSION TAG SEQADV 4YFD ALA B 353 UNP Q61730 EXPRESSION TAG SEQADV 4YFD HIS B 354 UNP Q61730 EXPRESSION TAG SEQADV 4YFD HIS B 355 UNP Q61730 EXPRESSION TAG SEQADV 4YFD HIS B 356 UNP Q61730 EXPRESSION TAG SEQADV 4YFD HIS B 357 UNP Q61730 EXPRESSION TAG SEQADV 4YFD HIS B 358 UNP Q61730 EXPRESSION TAG SEQADV 4YFD HIS B 359 UNP Q61730 EXPRESSION TAG SEQRES 1 B 339 SER GLU ARG CYS ASP ASP TRP GLY LEU ASP THR MET ARG SEQRES 2 B 339 GLN ILE GLN VAL PHE GLU ASP GLU PRO ALA ARG ILE LYS SEQRES 3 B 339 CYS PRO LEU PHE GLU HIS PHE LEU LYS TYR ASN TYR SER SEQRES 4 B 339 THR ALA HIS SER SER GLY LEU THR LEU ILE TRP TYR TRP SEQRES 5 B 339 THR ARG GLN ASP ARG ASP LEU GLU GLU PRO ILE ASN PHE SEQRES 6 B 339 ARG LEU PRO GLU ASN ARG ILE SER LYS GLU LYS ASP VAL SEQRES 7 B 339 LEU TRP PHE ARG PRO THR LEU LEU ASN ASP THR GLY ASN SEQRES 8 B 339 TYR THR CYS MET LEU ARG ASN THR THR TYR CYS SER LYS SEQRES 9 B 339 VAL ALA PHE PRO LEU GLU VAL VAL GLN LYS ASP SER CYS SEQRES 10 B 339 PHE ASN SER ALA MET ARG PHE PRO VAL HIS LYS MET TYR SEQRES 11 B 339 ILE GLU HIS GLY ILE HIS LYS ILE THR CYS PRO ASN VAL SEQRES 12 B 339 ASP GLY TYR PHE PRO SER SER VAL LYS PRO SER VAL THR SEQRES 13 B 339 TRP TYR LYS GLY CYS THR GLU ILE VAL ASP PHE HIS ASN SEQRES 14 B 339 VAL LEU PRO GLU GLY MET ASN LEU SER PHE PHE ILE PRO SEQRES 15 B 339 LEU VAL SER ASN ASN GLY ASN TYR THR CYS VAL VAL THR SEQRES 16 B 339 TYR PRO GLU ASN GLY ARG LEU PHE HIS LEU THR ARG THR SEQRES 17 B 339 VAL THR VAL LYS VAL VAL GLY SER PRO LYS ASP ALA LEU SEQRES 18 B 339 PRO PRO GLN ILE TYR SER PRO ASN ASP ARG VAL VAL TYR SEQRES 19 B 339 GLU LYS GLU PRO GLY GLU GLU LEU VAL ILE PRO CYS LYS SEQRES 20 B 339 VAL TYR PHE SER PHE ILE MET ASP SER HIS ASN GLU VAL SEQRES 21 B 339 TRP TRP THR ILE ASP GLY LYS LYS PRO ASP ASP VAL THR SEQRES 22 B 339 VAL ASP ILE THR ILE ASN GLU SER VAL SER TYR SER SER SEQRES 23 B 339 THR GLU ASP GLU THR ARG THR GLN ILE LEU SER ILE LYS SEQRES 24 B 339 LYS VAL THR PRO GLU ASP LEU ARG ARG ASN TYR VAL CYS SEQRES 25 B 339 HIS ALA ARG ASN THR LYS GLY GLU ALA GLU GLN ALA ALA SEQRES 26 B 339 LYS VAL LYS GLN LYS VAL ALA ALA HIS HIS HIS HIS HIS SEQRES 27 B 339 HIS SEQRES 1 A 491 GLU THR PRO PRO ARG PHE THR ARG THR PRO VAL ASP GLN SEQRES 2 A 491 THR GLY VAL SER GLY GLY VAL ALA SER PHE ILE CYS GLN SEQRES 3 A 491 ALA THR GLY ASP PRO ARG PRO LYS ILE VAL TRP ASN LYS SEQRES 4 A 491 LYS GLY LYS LYS VAL SER ASN GLN ARG PHE GLU VAL ILE SEQRES 5 A 491 GLU PHE ASP ASP GLY SER GLY SER VAL LEU ARG ILE GLN SEQRES 6 A 491 PRO LEU ARG THR PRO ARG ASP GLU ALA ILE TYR GLU CYS SEQRES 7 A 491 VAL ALA SER ASN ASN VAL GLY GLU ILE SER VAL SER THR SEQRES 8 A 491 ARG LEU THR VAL LEU ARG GLU ASP GLN ILE PRO ARG GLY SEQRES 9 A 491 PHE PRO THR ILE ASP MET GLY PRO GLN LEU LYS VAL VAL SEQRES 10 A 491 GLU ARG THR ARG THR ALA THR MET LEU CYS ALA ALA SER SEQRES 11 A 491 GLY ASN PRO ASP PRO GLU ILE THR TRP PHE LYS ASP PHE SEQRES 12 A 491 LEU PRO VAL ASP THR SER ASN ASN ASN GLY ARG ILE LYS SEQRES 13 A 491 GLN LEU ARG SER GLU SER ILE GLY GLY THR PRO ILE ARG SEQRES 14 A 491 GLY ALA LEU GLN ILE GLU GLN SER GLU GLU SER ASP GLN SEQRES 15 A 491 GLY LYS TYR GLU CYS VAL ALA THR ASN SER ALA GLY THR SEQRES 16 A 491 ARG TYR SER ALA PRO ALA ASN LEU TYR VAL ARG GLU LEU SEQRES 17 A 491 ARG GLU VAL ARG ARG VAL PRO PRO ARG PHE SER ILE PRO SEQRES 18 A 491 PRO THR ASN HIS GLU ILE MET PRO GLY GLY SER VAL ASN SEQRES 19 A 491 ILE THR CYS VAL ALA VAL GLY SER PRO MET PRO TYR VAL SEQRES 20 A 491 LYS TRP MET LEU GLY ALA GLU ASP LEU THR PRO GLU ASP SEQRES 21 A 491 ASP MET PRO ILE GLY ARG ASN VAL LEU GLU LEU ASN ASP SEQRES 22 A 491 VAL ARG GLN SER ALA ASN TYR THR CYS VAL ALA MET SER SEQRES 23 A 491 THR LEU GLY VAL ILE GLU ALA ILE ALA GLN ILE THR VAL SEQRES 24 A 491 LYS ALA LEU PRO LYS PRO PRO GLY THR PRO VAL VAL THR SEQRES 25 A 491 GLU SER THR ALA THR SER ILE THR LEU THR TRP ASP SER SEQRES 26 A 491 GLY ASN PRO GLU PRO VAL SER TYR TYR ILE ILE GLN HIS SEQRES 27 A 491 LYS PRO LYS ASN SER GLU GLU PRO TYR LYS GLU ILE ASP SEQRES 28 A 491 GLY ILE ALA THR THR ARG TYR SER VAL ALA GLY LEU SER SEQRES 29 A 491 PRO TYR SER ASP TYR GLU PHE ARG VAL VAL ALA VAL ASN SEQRES 30 A 491 ASN ILE GLY ARG GLY PRO ALA SER GLU PRO VAL LEU THR SEQRES 31 A 491 GLN THR SER GLU GLN ALA PRO SER SER ALA PRO ARG ASP SEQRES 32 A 491 VAL GLN ALA ARG MET LEU SER SER THR THR ILE LEU VAL SEQRES 33 A 491 GLN TRP LYS GLU PRO GLU GLU PRO ASN GLY GLN ILE GLN SEQRES 34 A 491 GLY TYR ARG VAL TYR TYR THR MET ASP PRO THR GLN HIS SEQRES 35 A 491 VAL ASN ASN TRP MET LYS HIS ASN VAL ALA ASP SER GLN SEQRES 36 A 491 ILE THR THR ILE GLY ASN LEU VAL PRO GLN LYS THR TYR SEQRES 37 A 491 SER VAL LYS VAL LEU ALA PHE THR SER ILE GLY ASP GLY SEQRES 38 A 491 PRO LEU SER SER ASP ILE GLN VAL ILE THR HET NAG B 401 14 HET NAG B 402 14 HET NAG B 403 14 HET NAG B 404 14 HET NAG B 405 14 HET NAG A 601 14 HET NAG A 602 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 7(C8 H15 N O6) HELIX 1 AA1 PRO B 48 GLU B 51 5 4 HELIX 2 AA2 ASN B 57 SER B 63 1 7 HELIX 3 AA3 LEU B 87 ASN B 90 5 4 HELIX 4 AA4 LEU B 105 ASP B 108 5 4 HELIX 5 AA5 THR B 322 ARG B 328 5 7 HELIX 6 AA6 ARG A 124 ILE A 128 5 5 HELIX 7 AA7 GLU A 205 GLN A 209 5 5 HELIX 8 AA8 HIS A 469 TRP A 473 5 5 SHEET 1 AA1 3 ASP B 25 LEU B 29 0 SHEET 2 AA1 3 SER B 123 VAL B 132 1 O ALA B 126 N GLY B 28 SHEET 3 AA1 3 ILE B 35 PHE B 38 1 N ILE B 35 O GLU B 130 SHEET 1 AA2 5 ASP B 25 LEU B 29 0 SHEET 2 AA2 5 SER B 123 VAL B 132 1 O ALA B 126 N GLY B 28 SHEET 3 AA2 5 GLY B 110 ARG B 117 -1 N TYR B 112 O PHE B 127 SHEET 4 AA2 5 THR B 67 ARG B 74 -1 N TYR B 71 O THR B 113 SHEET 5 AA2 5 GLU B 81 PRO B 82 -1 O GLU B 81 N TRP B 72 SHEET 1 AA3 3 ALA B 43 LYS B 46 0 SHEET 2 AA3 3 VAL B 98 PHE B 101 -1 O PHE B 101 N ALA B 43 SHEET 3 AA3 3 ILE B 92 GLU B 95 -1 N GLU B 95 O VAL B 98 SHEET 1 AA4 5 VAL B 146 TYR B 150 0 SHEET 2 AA4 5 ARG B 221 VAL B 234 1 O LYS B 232 N HIS B 147 SHEET 3 AA4 5 GLY B 208 GLU B 218 -1 N GLU B 218 O ARG B 221 SHEET 4 AA4 5 SER B 174 LYS B 179 -1 N SER B 174 O THR B 215 SHEET 5 AA4 5 THR B 182 GLU B 183 -1 O THR B 182 N LYS B 179 SHEET 1 AA5 3 HIS B 156 THR B 159 0 SHEET 2 AA5 3 ASN B 196 PHE B 199 -1 O LEU B 197 N ILE B 158 SHEET 3 AA5 3 VAL B 190 PRO B 192 -1 N LEU B 191 O SER B 198 SHEET 1 AA6 4 GLN B 244 ILE B 245 0 SHEET 2 AA6 4 LYS B 267 PHE B 270 -1 O TYR B 269 N GLN B 244 SHEET 3 AA6 4 GLU B 310 THR B 313 -1 O GLU B 310 N PHE B 270 SHEET 4 AA6 4 VAL B 302 TYR B 304 -1 N SER B 303 O THR B 311 SHEET 1 AA7 3 GLU B 279 THR B 283 0 SHEET 2 AA7 3 VAL B 331 ARG B 335 -1 O HIS B 333 N TRP B 281 SHEET 3 AA7 3 GLY B 339 GLN B 343 -1 O GLU B 342 N CYS B 332 SHEET 1 AA8 2 ILE B 296 ASN B 299 0 SHEET 2 AA8 2 ILE B 315 ILE B 318 -1 O SER B 317 N THR B 297 SHEET 1 AA9 4 THR A 29 ARG A 35 0 SHEET 2 AA9 4 ALA A 48 ASP A 57 -1 O GLN A 53 N ARG A 35 SHEET 3 AA9 4 GLY A 86 ILE A 91 -1 O ILE A 91 N ALA A 48 SHEET 4 AA9 4 PHE A 76 GLU A 80 -1 N GLU A 77 O ARG A 90 SHEET 1 AB1 5 GLN A 40 VAL A 43 0 SHEET 2 AB1 5 GLY A 112 LEU A 123 1 O ARG A 119 N GLN A 40 SHEET 3 AB1 5 ALA A 101 ASN A 109 -1 N TYR A 103 O THR A 118 SHEET 4 AB1 5 LYS A 61 LYS A 66 -1 N LYS A 61 O SER A 108 SHEET 5 AB1 5 LYS A 69 LYS A 70 -1 O LYS A 69 N LYS A 66 SHEET 1 AB2 4 THR A 134 MET A 137 0 SHEET 2 AB2 4 ALA A 150 SER A 157 -1 O ALA A 155 N MET A 137 SHEET 3 AB2 4 ILE A 195 ILE A 201 -1 O LEU A 199 N MET A 152 SHEET 4 AB2 4 ILE A 182 ARG A 186 -1 N LYS A 183 O GLN A 200 SHEET 1 AB3 5 LYS A 142 GLU A 145 0 SHEET 2 AB3 5 ALA A 228 ARG A 233 1 O TYR A 231 N VAL A 144 SHEET 3 AB3 5 GLY A 210 ASN A 218 -1 N TYR A 212 O ALA A 228 SHEET 4 AB3 5 GLU A 163 LYS A 168 -1 N THR A 165 O VAL A 215 SHEET 5 AB3 5 LEU A 171 PRO A 172 -1 O LEU A 171 N LYS A 168 SHEET 1 AB4 4 LYS A 142 GLU A 145 0 SHEET 2 AB4 4 ALA A 228 ARG A 233 1 O TYR A 231 N VAL A 144 SHEET 3 AB4 4 GLY A 210 ASN A 218 -1 N TYR A 212 O ALA A 228 SHEET 4 AB4 4 GLY A 221 TYR A 224 -1 O ARG A 223 N ALA A 216 SHEET 1 AB5 3 VAL A 241 ILE A 247 0 SHEET 2 AB5 3 VAL A 260 SER A 269 -1 O VAL A 267 N ARG A 244 SHEET 3 AB5 3 ARG A 293 LEU A 298 -1 O LEU A 298 N VAL A 260 SHEET 1 AB6 5 HIS A 252 GLU A 253 0 SHEET 2 AB6 5 GLY A 316 THR A 325 1 O GLN A 323 N HIS A 252 SHEET 3 AB6 5 ALA A 305 SER A 313 -1 N ALA A 305 O ILE A 324 SHEET 4 AB6 5 TYR A 273 LEU A 278 -1 N MET A 277 O THR A 308 SHEET 5 AB6 5 GLU A 281 ASP A 282 -1 O GLU A 281 N LEU A 278 SHEET 1 AB7 3 VAL A 337 SER A 341 0 SHEET 2 AB7 3 SER A 345 THR A 349 -1 O THR A 349 N VAL A 337 SHEET 3 AB7 3 ARG A 384 ALA A 388 -1 O VAL A 387 N ILE A 346 SHEET 1 AB8 4 LYS A 375 ILE A 380 0 SHEET 2 AB8 4 TYR A 360 PRO A 367 -1 N TYR A 361 O ILE A 380 SHEET 3 AB8 4 ASP A 395 VAL A 403 -1 O VAL A 401 N ILE A 362 SHEET 4 AB8 4 ARG A 408 ALA A 411 -1 O GLY A 409 N ALA A 402 SHEET 1 AB9 4 LYS A 375 ILE A 380 0 SHEET 2 AB9 4 TYR A 360 PRO A 367 -1 N TYR A 361 O ILE A 380 SHEET 3 AB9 4 ASP A 395 VAL A 403 -1 O VAL A 401 N ILE A 362 SHEET 4 AB9 4 VAL A 415 GLN A 418 -1 O THR A 417 N TYR A 396 SHEET 1 AC1 3 ARG A 429 MET A 435 0 SHEET 2 AC1 3 ILE A 441 LYS A 446 -1 O GLN A 444 N GLN A 432 SHEET 3 AC1 3 ILE A 483 ILE A 486 -1 O THR A 484 N VAL A 443 SHEET 1 AC2 4 MET A 474 ALA A 479 0 SHEET 2 AC2 4 GLY A 457 THR A 463 -1 N TYR A 458 O VAL A 478 SHEET 3 AC2 4 THR A 494 PHE A 502 -1 O LYS A 498 N TYR A 461 SHEET 4 AC2 4 ILE A 514 ILE A 517 -1 O VAL A 516 N TYR A 495 SSBOND 1 CYS B 24 CYS B 122 1555 1555 2.03 SSBOND 2 CYS B 47 CYS B 114 1555 1555 2.03 SSBOND 3 CYS B 137 CYS B 181 1555 1555 2.04 SSBOND 4 CYS B 160 CYS B 212 1555 1555 2.04 SSBOND 5 CYS B 266 CYS B 332 1555 1555 2.03 SSBOND 6 CYS A 52 CYS A 105 1555 1555 2.03 SSBOND 7 CYS A 154 CYS A 214 1555 1555 2.04 SSBOND 8 CYS A 264 CYS A 309 1555 1555 2.03 LINK ND2 ASN B 57 C1 NAG B 402 1555 1555 1.47 LINK ND2 ASN B 107 C1 NAG B 405 1555 1555 1.44 LINK ND2 ASN B 111 C1 NAG B 403 1555 1555 1.44 LINK ND2 ASN B 118 C1 NAG B 401 1555 1555 1.44 LINK ND2 ASN B 209 C1 NAG B 404 1555 1555 1.45 LINK ND2 ASN A 261 C1 NAG A 601 1555 1555 1.44 LINK ND2 ASN A 306 C1 NAG A 602 1555 1555 1.44 CISPEP 1 ARG B 102 PRO B 103 0 -2.17 CISPEP 2 PRO B 258 GLY B 259 0 -13.52 CISPEP 3 ASP A 57 PRO A 58 0 3.22 CISPEP 4 GLN A 92 PRO A 93 0 -11.10 CISPEP 5 THR A 96 PRO A 97 0 1.91 CISPEP 6 ASN A 159 PRO A 160 0 0.16 CISPEP 7 GLY A 257 GLY A 258 0 -4.29 CISPEP 8 SER A 269 PRO A 270 0 2.13 CRYST1 77.497 63.306 169.350 90.00 94.23 90.00 P 1 2 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012904 0.000000 0.000955 0.00000 SCALE2 0.000000 0.015796 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005921 0.00000