HEADER TRANSFERASE/DNA 25-FEB-15 4YFU TITLE CRYSTAL STRUCTURE OF OPEN BACILLUS FRAGMENT DNA POLYMERASE BOUND TO TITLE 2 DNA AND DTTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: DNA POLYMERASE I, 5'-TO-3' EXONUCLEASE-DEFICIENT; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PRIMER DNA; COMPND 10 CHAIN: B, E; COMPND 11 FRAGMENT: PRIMER DNA OLIGONUCLEOTIDE; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: TEMPLATE DNA; COMPND 16 CHAIN: C, F; COMPND 17 FRAGMENT: TEMPLATE DNA OLIGONUCLEOTIDE; COMPND 18 ENGINEERED: YES; COMPND 19 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS PROTEIN-DNA COMPLEX, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.Y.WU REVDAT 5 13-APR-22 4YFU 1 COMPND REMARK DBREF HETSYN REVDAT 5 2 1 LINK ATOM REVDAT 4 29-JUL-20 4YFU 1 COMPND JRNL REMARK HET REVDAT 4 2 1 HETNAM FORMUL LINK SITE REVDAT 4 3 1 ATOM REVDAT 3 16-SEP-15 4YFU 1 JRNL REVDAT 2 12-AUG-15 4YFU 1 REMARK REVDAT 1 22-JUL-15 4YFU 0 JRNL AUTH B.R.MILLER,L.S.BEESE,C.A.PARISH,E.Y.WU JRNL TITL THE CLOSING MECHANISM OF DNA POLYMERASE I AT ATOMIC JRNL TITL 2 RESOLUTION. JRNL REF STRUCTURE V. 23 1609 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26211612 JRNL DOI 10.1016/J.STR.2015.06.016 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 230017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 11140 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 15865 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 836 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9307 REMARK 3 NUCLEIC ACID ATOMS : 874 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 1371 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.589 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10669 ; 0.024 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 14644 ; 2.529 ; 1.908 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1203 ; 6.165 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 464 ;35.625 ;24.224 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1788 ;15.335 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 77 ;17.606 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1621 ; 0.166 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7694 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4683 ; 2.674 ; 2.411 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5863 ; 3.401 ; 3.607 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 5986 ; 4.456 ; 2.880 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4YFU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000207360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI111 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 241163 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 44.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.610 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.38 REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ~50% AMMONIUM SULFATE, MES PH 5.8, REMARK 280 MAGNESIUM SULFATE, METHYL PENTANEDIOL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 46.61500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.67000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.05000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.67000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.61500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.05000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 297 REMARK 465 DG C 1 REMARK 465 DA C 2 REMARK 465 DG C 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS D 297 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1442 O HOH A 1543 1.63 REMARK 500 O LEU D 507 O HOH D 1001 1.99 REMARK 500 O HOH A 1448 O HOH A 1523 2.02 REMARK 500 O HOH A 1314 O HOH A 1476 2.03 REMARK 500 O HOH D 1326 O HOH D 1486 2.05 REMARK 500 O HOH E 208 O HOH E 228 2.07 REMARK 500 SG CYS D 845 O HOH D 1463 2.07 REMARK 500 O HOH D 1259 O HOH D 1561 2.09 REMARK 500 O HOH D 1354 O HOH D 1540 2.11 REMARK 500 O HOH A 1247 O HOH A 1522 2.11 REMARK 500 O HOH D 1094 O HOH D 1426 2.14 REMARK 500 O HOH D 1009 O HOH D 1507 2.14 REMARK 500 O HOH D 1489 O HOH D 1493 2.16 REMARK 500 O HOH A 1018 O HOH A 1028 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1004 O HOH D 1292 2745 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 327 CE1 TYR A 327 CZ 0.081 REMARK 500 TRP A 382 CG TRP A 382 CD1 0.100 REMARK 500 TYR D 749 CB TYR D 749 CG 0.093 REMARK 500 GLU D 839 CD GLU D 839 OE1 0.091 REMARK 500 GLU D 853 CD GLU D 853 OE1 0.074 REMARK 500 DG B 27 O3' DC B 28 P -0.076 REMARK 500 DG C 5 O3' DA C 6 P -0.084 REMARK 500 DC E 28 O3' 2DT E 101 P 0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 372 CB - CG - OD2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ARG A 467 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 PHE A 490 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 578 NE - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 LEU A 591 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 ARG A 596 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 LYS A 601 CD - CE - NZ ANGL. DEV. = -20.7 DEGREES REMARK 500 ARG A 629 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 MET A 687 CG - SD - CE ANGL. DEV. = 12.0 DEGREES REMARK 500 ARG A 748 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 769 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 769 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 LEU A 832 CB - CG - CD2 ANGL. DEV. = -10.4 DEGREES REMARK 500 ARG D 306 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP D 372 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP D 402 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP D 408 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 LEU D 457 CB - CG - CD1 ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG D 459 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG D 466 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG D 472 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG D 578 CB - CG - CD ANGL. DEV. = -16.1 DEGREES REMARK 500 ARG D 578 NE - CZ - NH1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG D 578 NE - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG D 596 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG D 596 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 LYS D 601 CD - CE - NZ ANGL. DEV. = -19.5 DEGREES REMARK 500 PHE D 606 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG D 629 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG D 660 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 PHE D 735 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 MET D 750 CG - SD - CE ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG D 769 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG D 770 NE - CZ - NH2 ANGL. DEV. = 6.2 DEGREES REMARK 500 PHE D 786 CB - CG - CD1 ANGL. DEV. = 5.0 DEGREES REMARK 500 MET D 792 CG - SD - CE ANGL. DEV. = -9.9 DEGREES REMARK 500 ASP D 802 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 GLU D 831 CA - CB - CG ANGL. DEV. = 16.1 DEGREES REMARK 500 ARG D 843 CD - NE - CZ ANGL. DEV. = 15.7 DEGREES REMARK 500 ARG D 843 NE - CZ - NH1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG D 843 NE - CZ - NH2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ARG D 846 CG - CD - NE ANGL. DEV. = 28.3 DEGREES REMARK 500 ARG D 846 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG D 859 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG D 859 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 DA B 25 O5' - P - OP1 ANGL. DEV. = 17.9 DEGREES REMARK 500 DA B 25 O5' - P - OP2 ANGL. DEV. = -17.1 DEGREES REMARK 500 DA C 6 O5' - P - OP2 ANGL. DEV. = -7.5 DEGREES REMARK 500 DA E 25 O5' - P - OP2 ANGL. DEV. = -6.5 DEGREES REMARK 500 DA E 25 P - O5' - C5' ANGL. DEV. = 18.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 56 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 372 62.79 60.43 REMARK 500 ASP A 402 101.59 -167.58 REMARK 500 ASP A 408 13.26 -140.85 REMARK 500 ALA A 421 37.28 -89.52 REMARK 500 LEU A 477 -68.79 -120.88 REMARK 500 GLN A 524 144.67 -175.79 REMARK 500 GLN A 691 83.12 55.27 REMARK 500 HIS A 768 23.00 80.75 REMARK 500 HIS A 829 -52.68 72.40 REMARK 500 ASP D 402 99.52 -169.05 REMARK 500 ASP D 408 14.71 -141.59 REMARK 500 ALA D 421 44.00 -90.07 REMARK 500 ARG D 435 58.94 33.44 REMARK 500 LEU D 477 -70.54 -118.49 REMARK 500 LEU D 610 -53.17 -125.25 REMARK 500 LEU D 610 -51.92 -125.77 REMARK 500 ILE D 628 -31.97 -145.83 REMARK 500 HIS D 768 24.06 81.86 REMARK 500 HIS D 829 -52.74 71.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1555 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A1556 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH B 237 DISTANCE = 7.65 ANGSTROMS DBREF 4YFU A 298 876 UNP E1C9K5 E1C9K5_GEOSE 2 580 DBREF 4YFU D 298 876 UNP E1C9K5 E1C9K5_GEOSE 2 580 DBREF 4YFU B 21 101 PDB 4YFU 4YFU 21 101 DBREF 4YFU C 1 14 PDB 4YFU 4YFU 1 14 DBREF 4YFU E 21 101 PDB 4YFU 4YFU 21 101 DBREF 4YFU F 1 14 PDB 4YFU 4YFU 1 14 SEQADV 4YFU LYS A 297 UNP E1C9K5 EXPRESSION TAG SEQADV 4YFU GLU A 456 UNP E1C9K5 ALA 160 CONFLICT SEQADV 4YFU LYS A 505 UNP E1C9K5 GLU 209 CONFLICT SEQADV 4YFU GLY A 512 UNP E1C9K5 ARG 216 CONFLICT SEQADV 4YFU THR A 550 UNP E1C9K5 SER 254 CONFLICT SEQADV 4YFU ALA A 598 UNP E1C9K5 ASP 302 ENGINEERED MUTATION SEQADV 4YFU TYR A 710 UNP E1C9K5 PHE 414 ENGINEERED MUTATION SEQADV 4YFU HIS A 823 UNP E1C9K5 ARG 527 CONFLICT SEQADV 4YFU LYS D 297 UNP E1C9K5 EXPRESSION TAG SEQADV 4YFU GLU D 456 UNP E1C9K5 ALA 160 CONFLICT SEQADV 4YFU LYS D 505 UNP E1C9K5 GLU 209 CONFLICT SEQADV 4YFU GLY D 512 UNP E1C9K5 ARG 216 CONFLICT SEQADV 4YFU THR D 550 UNP E1C9K5 SER 254 CONFLICT SEQADV 4YFU ALA D 598 UNP E1C9K5 ASP 302 ENGINEERED MUTATION SEQADV 4YFU TYR D 710 UNP E1C9K5 PHE 414 ENGINEERED MUTATION SEQADV 4YFU HIS D 823 UNP E1C9K5 ARG 527 CONFLICT SEQRES 1 A 580 LYS LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU SEQRES 2 A 580 GLU MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL SEQRES 3 A 580 VAL GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE SEQRES 4 A 580 ALA VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO SEQRES 5 A 580 GLU THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU SEQRES 6 A 580 GLY ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS SEQRES 7 A 580 ARG ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU SEQRES 8 A 580 CME GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU SEQRES 9 A 580 LEU ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA SEQRES 10 A 580 ALA LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU SEQRES 11 A 580 ALA VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP SEQRES 12 A 580 GLU PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA SEQRES 13 A 580 ALA ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU SEQRES 14 A 580 ARG ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU SEQRES 15 A 580 GLN PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA SEQRES 16 A 580 GLY VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY SEQRES 17 A 580 LYS GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG SEQRES 18 A 580 ILE TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER SEQRES 19 A 580 PRO LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN SEQRES 20 A 580 LEU PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SEQRES 21 A 580 SER ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU SEQRES 22 A 580 ILE VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS SEQRES 23 A 580 LEU GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL SEQRES 24 A 580 ARG PRO ALA THR LYS LYS VAL HIS THR ILE PHE ASN GLN SEQRES 25 A 580 ALA LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO SEQRES 26 A 580 ASN LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG SEQRES 27 A 580 LYS ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP SEQRES 28 A 580 LEU ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG SEQRES 29 A 580 VAL LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU SEQRES 30 A 580 ALA PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA SEQRES 31 A 580 MET ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO SEQRES 32 A 580 ASN MET ARG ARG GLN ALA LYS ALA VAL ASN TYR GLY ILE SEQRES 33 A 580 VAL TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU SEQRES 34 A 580 ASN ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG SEQRES 35 A 580 TYR PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU SEQRES 36 A 580 ASN ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR SEQRES 37 A 580 THR LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SEQRES 38 A 580 SER ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET SEQRES 39 A 580 ALA MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE SEQRES 40 A 580 ILE LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS SEQRES 41 A 580 GLU GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS SEQRES 42 A 580 ASP GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU SEQRES 43 A 580 ARG LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA SEQRES 44 A 580 VAL THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR SEQRES 45 A 580 GLY SER THR TRP TYR ASP ALA LYS SEQRES 1 D 580 LYS LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU SEQRES 2 D 580 GLU MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL SEQRES 3 D 580 VAL GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE SEQRES 4 D 580 ALA VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO SEQRES 5 D 580 GLU THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU SEQRES 6 D 580 GLY ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS SEQRES 7 D 580 ARG ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU SEQRES 8 D 580 CME GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU SEQRES 9 D 580 LEU ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA SEQRES 10 D 580 ALA LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU SEQRES 11 D 580 ALA VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP SEQRES 12 D 580 GLU PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA SEQRES 13 D 580 ALA ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU SEQRES 14 D 580 ARG ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU SEQRES 15 D 580 GLN PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA SEQRES 16 D 580 GLY VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY SEQRES 17 D 580 LYS GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG SEQRES 18 D 580 ILE TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER SEQRES 19 D 580 PRO LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN SEQRES 20 D 580 LEU PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SEQRES 21 D 580 SER ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU SEQRES 22 D 580 ILE VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS SEQRES 23 D 580 LEU GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL SEQRES 24 D 580 ARG PRO ALA THR LYS LYS VAL HIS THR ILE PHE ASN GLN SEQRES 25 D 580 ALA LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO SEQRES 26 D 580 ASN LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG SEQRES 27 D 580 LYS ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP SEQRES 28 D 580 LEU ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG SEQRES 29 D 580 VAL LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU SEQRES 30 D 580 ALA PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA SEQRES 31 D 580 MET ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO SEQRES 32 D 580 ASN MET ARG ARG GLN ALA LYS ALA VAL ASN TYR GLY ILE SEQRES 33 D 580 VAL TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU SEQRES 34 D 580 ASN ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG SEQRES 35 D 580 TYR PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU SEQRES 36 D 580 ASN ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR SEQRES 37 D 580 THR LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SEQRES 38 D 580 SER ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET SEQRES 39 D 580 ALA MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE SEQRES 40 D 580 ILE LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS SEQRES 41 D 580 GLU GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS SEQRES 42 D 580 ASP GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU SEQRES 43 D 580 ARG LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA SEQRES 44 D 580 VAL THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR SEQRES 45 D 580 GLY SER THR TRP TYR ASP ALA LYS SEQRES 1 B 9 DC DA DT DG DA DT DG DC 2DT SEQRES 1 C 14 DG DA DG DC DG DA DG DC DA DT DC DA DT SEQRES 2 C 14 DG SEQRES 1 E 9 DC DA DT DG DA DT DG DC 2DT SEQRES 1 F 14 DG DA DG DC DG DA DG DC DA DT DC DA DT SEQRES 2 F 14 DG MODRES 4YFU CME A 388 CYS MODIFIED RESIDUE MODRES 4YFU CME D 388 CYS MODIFIED RESIDUE HET CME A 388 10 HET CME D 388 10 HET 2DT B 101 19 HET 2DT E 101 19 HET GLC G 1 11 HET FRU G 2 12 HET GLC H 1 11 HET FRU H 2 12 HET TTP A 901 29 HET SO4 D 901 5 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM 2DT 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE HETNAM SO4 SULFATE ION HETSYN 2DT 2',3'-DIDEOXYTHYMIDINE-5'-MONOPHOSPHATE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 1 CME 2(C5 H11 N O3 S2) FORMUL 3 2DT 2(C10 H15 N2 O7 P) FORMUL 7 GLC 2(C6 H12 O6) FORMUL 7 FRU 2(C6 H12 O6) FORMUL 9 TTP C10 H17 N2 O14 P3 FORMUL 10 SO4 O4 S 2- FORMUL 11 HOH *1371(H2 O) HELIX 1 AA1 THR A 308 LEU A 312 5 5 HELIX 2 AA2 ARG A 347 LEU A 352 1 6 HELIX 3 AA3 ASP A 354 GLY A 362 1 9 HELIX 4 AA4 ASP A 372 LYS A 383 1 12 HELIX 5 AA5 LEU A 394 ASP A 402 1 9 HELIX 6 AA6 PRO A 403 GLY A 406 5 4 HELIX 7 AA7 ASP A 409 MET A 416 1 8 HELIX 8 AA8 PRO A 424 GLY A 430 1 7 HELIX 9 AA9 LYS A 431 ARG A 435 5 5 HELIX 10 AB1 ASP A 439 ASN A 468 1 30 HELIX 11 AB2 GLN A 470 GLU A 476 1 7 HELIX 12 AB3 LEU A 477 GLY A 492 1 16 HELIX 13 AB4 ASP A 496 GLY A 523 1 28 HELIX 14 AB5 SER A 530 GLU A 540 1 11 HELIX 15 AB6 SER A 557 ALA A 565 1 9 HELIX 16 AB7 GLU A 569 THR A 586 1 18 HELIX 17 AB8 TYR A 587 VAL A 595 1 9 HELIX 18 AB9 LEU A 630 LYS A 635 1 6 HELIX 19 AC1 ILE A 636 GLN A 638 5 3 HELIX 20 AC2 GLN A 656 GLU A 667 1 12 HELIX 21 AC3 ASP A 668 ARG A 677 1 10 HELIX 22 AC4 ASP A 680 PHE A 690 1 11 HELIX 23 AC5 SER A 693 VAL A 697 5 5 HELIX 24 AC6 THR A 698 TYR A 714 1 17 HELIX 25 AC7 SER A 717 ASN A 726 1 10 HELIX 26 AC8 SER A 728 PHE A 743 1 16 HELIX 27 AC9 PHE A 743 GLY A 761 1 19 HELIX 28 AD1 PRO A 774 SER A 778 5 5 HELIX 29 AD2 ASN A 780 ARG A 819 1 40 HELIX 30 AD3 GLU A 840 ALA A 855 1 16 HELIX 31 AD4 THR D 308 LEU D 312 5 5 HELIX 32 AD5 ARG D 347 LEU D 352 1 6 HELIX 33 AD6 ASP D 354 ASP D 363 1 10 HELIX 34 AD7 ASP D 372 TRP D 382 1 11 HELIX 35 AD8 LEU D 394 ASP D 402 1 9 HELIX 36 AD9 PRO D 403 GLY D 406 5 4 HELIX 37 AE1 ASP D 409 MET D 416 1 8 HELIX 38 AE2 PRO D 424 GLY D 430 1 7 HELIX 39 AE3 ASP D 439 ASN D 468 1 30 HELIX 40 AE4 GLN D 470 GLU D 476 1 7 HELIX 41 AE5 LEU D 477 GLY D 492 1 16 HELIX 42 AE6 ASP D 496 GLY D 523 1 28 HELIX 43 AE7 SER D 530 GLU D 540 1 11 HELIX 44 AE8 SER D 557 ALA D 565 1 9 HELIX 45 AE9 PRO D 566 HIS D 568 5 3 HELIX 46 AF1 GLU D 569 TYR D 587 1 19 HELIX 47 AF2 TYR D 587 VAL D 595 1 9 HELIX 48 AF3 LEU D 630 LYS D 635 1 6 HELIX 49 AF4 ILE D 636 GLN D 638 5 3 HELIX 50 AF5 GLN D 656 GLU D 667 1 12 HELIX 51 AF6 ASP D 668 ARG D 677 1 10 HELIX 52 AF7 ASP D 680 GLN D 691 1 12 HELIX 53 AF8 SER D 693 VAL D 697 5 5 HELIX 54 AF9 THR D 698 TYR D 714 1 17 HELIX 55 AG1 SER D 717 ASN D 726 1 10 HELIX 56 AG2 SER D 728 PHE D 743 1 16 HELIX 57 AG3 PHE D 743 GLY D 761 1 19 HELIX 58 AG4 PRO D 774 SER D 778 5 5 HELIX 59 AG5 ASN D 780 GLU D 818 1 39 HELIX 60 AG6 GLU D 840 GLN D 854 1 15 SHEET 1 AA1 6 THR A 302 LEU A 303 0 SHEET 2 AA1 6 GLY A 342 LEU A 346 1 O ARG A 343 N THR A 302 SHEET 3 AA1 6 GLY A 334 ASN A 339 -1 N VAL A 337 O PHE A 344 SHEET 4 AA1 6 LYS A 315 GLU A 321 -1 N ALA A 317 O VAL A 338 SHEET 5 AA1 6 LYS A 367 MET A 370 1 O SER A 369 N LEU A 318 SHEET 6 AA1 6 VAL A 390 ASP A 393 1 O PHE A 392 N MET A 370 SHEET 1 AA2 3 LYS A 601 VAL A 602 0 SHEET 2 AA2 3 VAL A 493 VAL A 495 -1 N VAL A 493 O VAL A 602 SHEET 3 AA2 3 PHE A 640 VAL A 641 -1 O VAL A 641 N LYS A 494 SHEET 1 AA3 2 LYS A 549 THR A 550 0 SHEET 2 AA3 2 GLY A 553 TYR A 554 -1 O GLY A 553 N THR A 550 SHEET 1 AA4 2 ILE A 605 ASN A 607 0 SHEET 2 AA4 2 SER A 617 THR A 619 -1 O THR A 619 N ILE A 605 SHEET 1 AA5 4 HIS A 823 GLN A 827 0 SHEET 2 AA5 4 GLU A 831 PRO A 837 -1 O ILE A 833 N LEU A 825 SHEET 3 AA5 4 TRP A 647 TYR A 654 -1 N ALA A 652 O LEU A 832 SHEET 4 AA5 4 VAL A 864 GLY A 869 -1 O HIS A 867 N ALA A 651 SHEET 1 AA6 2 TYR A 762 THR A 764 0 SHEET 2 AA6 2 ARG A 770 TYR A 772 -1 O ARG A 771 N VAL A 763 SHEET 1 AA7 6 THR D 302 ALA D 304 0 SHEET 2 AA7 6 GLY D 342 LEU D 346 1 O PHE D 345 N THR D 302 SHEET 3 AA7 6 GLY D 334 ASN D 339 -1 N ILE D 335 O LEU D 346 SHEET 4 AA7 6 LYS D 315 GLU D 321 -1 N ALA D 317 O VAL D 338 SHEET 5 AA7 6 LYS D 367 MET D 370 1 O SER D 369 N LEU D 318 SHEET 6 AA7 6 VAL D 390 ASP D 393 1 O PHE D 392 N MET D 370 SHEET 1 AA8 3 LYS D 601 VAL D 602 0 SHEET 2 AA8 3 VAL D 493 VAL D 495 -1 N VAL D 493 O VAL D 602 SHEET 3 AA8 3 PHE D 640 VAL D 641 -1 O VAL D 641 N LYS D 494 SHEET 1 AA9 2 LYS D 549 THR D 550 0 SHEET 2 AA9 2 GLY D 553 TYR D 554 -1 O GLY D 553 N THR D 550 SHEET 1 AB1 2 ILE D 605 ASN D 607 0 SHEET 2 AB1 2 SER D 617 THR D 619 -1 O THR D 619 N ILE D 605 SHEET 1 AB2 4 HIS D 823 GLN D 827 0 SHEET 2 AB2 4 GLU D 831 PRO D 837 -1 O ILE D 833 N LEU D 825 SHEET 3 AB2 4 TRP D 647 TYR D 654 -1 N PHE D 650 O LEU D 834 SHEET 4 AB2 4 VAL D 864 GLY D 869 -1 O HIS D 867 N ALA D 651 SHEET 1 AB3 2 TYR D 762 THR D 764 0 SHEET 2 AB3 2 ARG D 770 TYR D 772 -1 O ARG D 771 N VAL D 763 LINK C LEU A 387 N CME A 388 1555 1555 1.33 LINK C CME A 388 N GLY A 389 1555 1555 1.33 LINK C LEU D 387 N CME D 388 1555 1555 1.33 LINK C CME D 388 N GLY D 389 1555 1555 1.31 LINK O3' DC B 28 P 2DT B 101 1555 1555 1.56 LINK O3' DC E 28 P 2DT E 101 1555 1555 1.69 LINK C1 GLC G 1 O2 FRU G 2 1555 1555 1.48 LINK C1 GLC H 1 O2 FRU H 2 1555 1555 1.44 CISPEP 1 GLU A 620 PRO A 621 0 1.71 CISPEP 2 GLY D 430 LYS D 431 0 0.48 CISPEP 3 GLY D 432 ALA D 433 0 10.64 CISPEP 4 ALA D 433 LYS D 434 0 19.30 CISPEP 5 GLU D 620 PRO D 621 0 3.59 CRYST1 93.230 108.100 151.340 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010726 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009251 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006608 0.00000