HEADER HYDROLASE/HYDROLASE INHIBITOR 27-FEB-15 4YHQ TITLE CRYSTAL STRUCTURE OF MULTIDRUG RESISTANT CLINICAL ISOLATE PR20 WITH TITLE 2 GRL-5010A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PR, RETROPEPSIN; COMPND 5 EC: 3.4.23.16; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 3 SUBTYPE; SOURCE 4 ORGANISM_COMMON: HIV-1; SOURCE 5 ORGANISM_TAXID: 11678; SOURCE 6 STRAIN: ISOLATE PR20; SOURCE 7 GENE: GAG-POL; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIV PROTEASE, MUTANT, DRUG RESISTANT, INHIBITOR, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.AGNISWAMY,I.T.WEBER REVDAT 5 27-SEP-23 4YHQ 1 REMARK REVDAT 4 23-MAR-22 4YHQ 1 LINK REVDAT 3 05-DEC-18 4YHQ 1 COMPND SOURCE JRNL REMARK REVDAT 3 2 1 SEQADV SEQRES LINK SITE REVDAT 3 3 1 ATOM REVDAT 2 08-JUL-15 4YHQ 1 JRNL REVDAT 1 10-JUN-15 4YHQ 0 JRNL AUTH J.AGNISWAMY,J.M.LOUIS,C.H.SHEN,S.YASHCHUK,A.K.GHOSH, JRNL AUTH 2 I.T.WEBER JRNL TITL SUBSTITUTED BIS-THF PROTEASE INHIBITORS WITH IMPROVED JRNL TITL 2 POTENCY AGAINST HIGHLY RESISTANT MATURE HIV-1 PROTEASE PR20. JRNL REF J.MED.CHEM. V. 58 5088 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 26010498 JRNL DOI 10.1021/ACS.JMEDCHEM.5B00474 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 41329 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2079 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2125 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1518 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 175 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.12000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.897 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2161 ; 0.028 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2985 ; 2.749 ; 2.019 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 287 ; 8.563 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 76 ;46.755 ;24.474 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 356 ;19.235 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;21.484 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 344 ; 0.192 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1645 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1312 ; 2.875 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2178 ; 4.170 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 849 ; 5.622 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 805 ; 7.693 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2161 ; 2.931 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4YHQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207477. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41329 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.40900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3UCB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.15M SODIUM CHLORIDE, 0.1M SODIUM REMARK 280 ACETATE PH 5.5 AND 0.01M YITTRIUM CHLORIDE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.71367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.42733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.07050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 71.78417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 14.35683 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 7 O HOH B 204 2.14 REMARK 500 OE2 GLU B 34 O HOH B 205 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 53 CB PHE A 53 CG 0.138 REMARK 500 THR B 74 CB THR B 74 CG2 -0.226 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 VAL A 47 CG1 - CB - CG2 ANGL. DEV. = -11.2 DEGREES REMARK 500 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 VAL B 47 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 ILE B 50 CG1 - CB - CG2 ANGL. DEV. = 15.9 DEGREES REMARK 500 GLY B 51 N - CA - C ANGL. DEV. = 15.9 DEGREES REMARK 500 LEU B 54 CA - CB - CG ANGL. DEV. = 17.9 DEGREES REMARK 500 GLU B 58 OE1 - CD - OE2 ANGL. DEV. = -9.0 DEGREES REMARK 500 THR B 74 N - CA - C ANGL. DEV. = 17.9 DEGREES REMARK 500 VAL B 75 C - N - CA ANGL. DEV. = -15.7 DEGREES REMARK 500 ARG B 87 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 61 -99.73 -78.43 REMARK 500 VAL A 62 112.61 54.62 REMARK 500 PHE B 53 -167.37 -128.19 REMARK 500 GLN B 61 -105.12 -76.33 REMARK 500 VAL B 62 106.67 62.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 52 PHE A 53 -144.83 REMARK 500 ILE B 50 GLY B 51 -145.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 286 DISTANCE = 5.88 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 Y1 A 202 Y REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 35 OD1 REMARK 620 2 ASP A 35 OD2 54.8 REMARK 620 3 GLU A 58 OE2 76.3 46.1 REMARK 620 4 ASP A 60 OD1 69.5 38.5 8.2 REMARK 620 5 ASP A 60 OD2 72.0 37.5 8.7 3.7 REMARK 620 6 HOH A 308 O 46.6 99.5 98.1 96.0 99.7 REMARK 620 7 HOH A 357 O 66.8 114.3 140.6 135.4 138.4 46.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 Y1 A 203 Y REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 35 OD2 REMARK 620 2 GLU A 58 OE2 57.9 REMARK 620 3 ASP A 60 OD1 49.9 8.3 REMARK 620 4 ASP A 60 OD2 51.5 8.8 4.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 207 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 89 OG1 REMARK 620 2 HOH A 312 O 120.3 REMARK 620 3 HOH A 366 O 137.9 29.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 Y1 B 101 Y REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 35 OD1 REMARK 620 2 ASP B 35 OD2 54.4 REMARK 620 3 LYS B 43 NZ 46.9 83.3 REMARK 620 4 GLU B 58 OE2 46.4 77.5 7.2 REMARK 620 5 ASP B 60 OD1 38.3 71.5 11.9 8.3 REMARK 620 6 HOH B 205 O 98.5 46.5 104.8 97.5 96.7 REMARK 620 7 HOH B 234 O 113.5 66.5 148.8 142.0 137.5 48.4 REMARK 620 8 HOH B 272 O 84.7 138.8 69.7 76.9 79.2 169.0 139.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 Y1 B 102 Y REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 35 OD1 REMARK 620 2 LYS B 43 NZ 63.8 REMARK 620 3 GLU B 58 OE1 63.8 4.1 REMARK 620 4 GLU B 58 OE2 59.0 7.7 5.2 REMARK 620 5 ASP B 60 OD1 51.6 12.3 12.3 8.4 REMARK 620 6 ASP B 60 OD2 53.2 10.9 12.3 9.9 4.2 REMARK 620 7 HOH B 210 O 73.4 109.4 105.8 101.8 101.5 105.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G10 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Y1 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Y1 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Y1 B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Y1 B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 105 DBREF 4YHQ A 1 99 UNP P03366 POL_HV1B1 501 599 DBREF 4YHQ B 1 99 UNP P03366 POL_HV1B1 501 599 SEQADV 4YHQ LYS A 7 UNP P03366 GLN 507 ENGINEERED MUTATION SEQADV 4YHQ PHE A 10 UNP P03366 LEU 510 ENGINEERED MUTATION SEQADV 4YHQ VAL A 13 UNP P03366 ILE 513 ENGINEERED MUTATION SEQADV 4YHQ VAL A 15 UNP P03366 ILE 515 ENGINEERED MUTATION SEQADV 4YHQ ASN A 30 UNP P03366 ASP 530 ENGINEERED MUTATION SEQADV 4YHQ ILE A 32 UNP P03366 VAL 532 ENGINEERED MUTATION SEQADV 4YHQ PHE A 33 UNP P03366 LEU 533 ENGINEERED MUTATION SEQADV 4YHQ ASP A 35 UNP P03366 GLU 535 ENGINEERED MUTATION SEQADV 4YHQ ILE A 36 UNP P03366 MET 536 ENGINEERED MUTATION SEQADV 4YHQ ASN A 37 UNP P03366 SER 537 ENGINEERED MUTATION SEQADV 4YHQ VAL A 47 UNP P03366 ILE 547 ENGINEERED MUTATION SEQADV 4YHQ LEU A 54 UNP P03366 ILE 554 ENGINEERED MUTATION SEQADV 4YHQ GLU A 58 UNP P03366 GLN 558 ENGINEERED MUTATION SEQADV 4YHQ VAL A 62 UNP P03366 ILE 562 ENGINEERED MUTATION SEQADV 4YHQ PRO A 63 UNP P03366 LEU 563 ENGINEERED MUTATION SEQADV 4YHQ ALA A 67 UNP P03366 CYS 567 ENGINEERED MUTATION SEQADV 4YHQ VAL A 71 UNP P03366 ALA 571 ENGINEERED MUTATION SEQADV 4YHQ VAL A 84 UNP P03366 ILE 584 ENGINEERED MUTATION SEQADV 4YHQ ASP A 88 UNP P03366 ASN 588 ENGINEERED MUTATION SEQADV 4YHQ THR A 89 UNP P03366 LEU 589 ENGINEERED MUTATION SEQADV 4YHQ MET A 90 UNP P03366 LEU 590 ENGINEERED MUTATION SEQADV 4YHQ ALA A 95 UNP P03366 CYS 595 ENGINEERED MUTATION SEQADV 4YHQ LYS B 7 UNP P03366 GLN 507 ENGINEERED MUTATION SEQADV 4YHQ PHE B 10 UNP P03366 LEU 510 ENGINEERED MUTATION SEQADV 4YHQ VAL B 13 UNP P03366 ILE 513 ENGINEERED MUTATION SEQADV 4YHQ VAL B 15 UNP P03366 ILE 515 ENGINEERED MUTATION SEQADV 4YHQ ASN B 30 UNP P03366 ASP 530 ENGINEERED MUTATION SEQADV 4YHQ ILE B 32 UNP P03366 VAL 532 ENGINEERED MUTATION SEQADV 4YHQ PHE B 33 UNP P03366 LEU 533 ENGINEERED MUTATION SEQADV 4YHQ ASP B 35 UNP P03366 GLU 535 ENGINEERED MUTATION SEQADV 4YHQ ILE B 36 UNP P03366 MET 536 ENGINEERED MUTATION SEQADV 4YHQ ASN B 37 UNP P03366 SER 537 ENGINEERED MUTATION SEQADV 4YHQ VAL B 47 UNP P03366 ILE 547 ENGINEERED MUTATION SEQADV 4YHQ LEU B 54 UNP P03366 ILE 554 ENGINEERED MUTATION SEQADV 4YHQ GLU B 58 UNP P03366 GLN 558 ENGINEERED MUTATION SEQADV 4YHQ VAL B 62 UNP P03366 ILE 562 ENGINEERED MUTATION SEQADV 4YHQ PRO B 63 UNP P03366 LEU 563 ENGINEERED MUTATION SEQADV 4YHQ ALA B 67 UNP P03366 CYS 567 ENGINEERED MUTATION SEQADV 4YHQ VAL B 71 UNP P03366 ALA 571 ENGINEERED MUTATION SEQADV 4YHQ VAL B 84 UNP P03366 ILE 584 ENGINEERED MUTATION SEQADV 4YHQ ASP B 88 UNP P03366 ASN 588 ENGINEERED MUTATION SEQADV 4YHQ THR B 89 UNP P03366 LEU 589 ENGINEERED MUTATION SEQADV 4YHQ MET B 90 UNP P03366 LEU 590 ENGINEERED MUTATION SEQADV 4YHQ ALA B 95 UNP P03366 CYS 595 ENGINEERED MUTATION SEQRES 1 A 99 PRO GLN ILE THR LEU TRP LYS ARG PRO PHE VAL THR VAL SEQRES 2 A 99 LYS VAL GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR SEQRES 3 A 99 GLY ALA ASP ASN THR ILE PHE GLU ASP ILE ASN LEU PRO SEQRES 4 A 99 GLY ARG TRP LYS PRO LYS MET VAL GLY GLY ILE GLY GLY SEQRES 5 A 99 PHE LEU LYS VAL ARG GLU TYR ASP GLN VAL PRO ILE GLU SEQRES 6 A 99 ILE ALA GLY HIS LYS VAL ILE GLY THR VAL LEU VAL GLY SEQRES 7 A 99 PRO THR PRO VAL ASN VAL ILE GLY ARG ASP THR MET THR SEQRES 8 A 99 GLN ILE GLY ALA THR LEU ASN PHE SEQRES 1 B 99 PRO GLN ILE THR LEU TRP LYS ARG PRO PHE VAL THR VAL SEQRES 2 B 99 LYS VAL GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR SEQRES 3 B 99 GLY ALA ASP ASN THR ILE PHE GLU ASP ILE ASN LEU PRO SEQRES 4 B 99 GLY ARG TRP LYS PRO LYS MET VAL GLY GLY ILE GLY GLY SEQRES 5 B 99 PHE LEU LYS VAL ARG GLU TYR ASP GLN VAL PRO ILE GLU SEQRES 6 B 99 ILE ALA GLY HIS LYS VAL ILE GLY THR VAL LEU VAL GLY SEQRES 7 B 99 PRO THR PRO VAL ASN VAL ILE GLY ARG ASP THR MET THR SEQRES 8 B 99 GLN ILE GLY ALA THR LEU ASN PHE HET G10 A 201 80 HET Y1 A 202 1 HET Y1 A 203 1 HET CL A 204 1 HET CL A 205 1 HET CL A 206 1 HET NA A 207 1 HET GOL A 208 6 HET Y1 B 101 1 HET Y1 B 102 1 HET CL B 103 1 HET CL B 104 1 HET GOL B 105 6 HETNAM G10 (3R,3AS,6AS)-4,4-DIFLUOROHEXAHYDROFURO[2,3-B]FURAN-3-YL HETNAM 2 G10 [(2S,3R)-4-{[(4-AMINOPHENYL)SULFONYL](2-METHYLPROPYL) HETNAM 3 G10 AMINO}-3-HYDROXY-1-PHENYLBUTAN-2-YL]CARBAMATE HETNAM Y1 YTTRIUM ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 G10 C27 H35 F2 N3 O7 S FORMUL 4 Y1 4(Y 2+) FORMUL 6 CL 5(CL 1-) FORMUL 9 NA NA 1+ FORMUL 10 GOL 2(C3 H8 O3) FORMUL 16 HOH *175(H2 O) HELIX 1 AA1 GLY A 86 ILE A 93 1 8 HELIX 2 AA2 GLY B 86 ILE B 93 1 8 SHEET 1 AA1 4 GLN A 2 ILE A 3 0 SHEET 2 AA1 4 THR B 96 ASN B 98 -1 O LEU B 97 N ILE A 3 SHEET 3 AA1 4 THR A 96 ASN A 98 -1 N ASN A 98 O THR B 96 SHEET 4 AA1 4 GLN B 2 ILE B 3 -1 O ILE B 3 N LEU A 97 SHEET 1 AA2 5 HIS A 69 ILE A 72 0 SHEET 2 AA2 5 PRO A 63 ILE A 66 -1 N ILE A 66 O HIS A 69 SHEET 3 AA2 5 PHE A 10 VAL A 15 -1 N LYS A 14 O GLU A 65 SHEET 4 AA2 5 GLN A 18 LEU A 24 -1 O LYS A 20 N VAL A 13 SHEET 5 AA2 5 VAL A 84 ILE A 85 1 O ILE A 85 N LEU A 23 SHEET 1 AA3 4 ILE A 32 PHE A 33 0 SHEET 2 AA3 4 VAL A 75 VAL A 77 1 O LEU A 76 N PHE A 33 SHEET 3 AA3 4 GLY A 52 TYR A 59 -1 N TYR A 59 O VAL A 75 SHEET 4 AA3 4 LYS A 43 GLY A 49 -1 N LYS A 45 O VAL A 56 SHEET 1 AA4 5 HIS B 69 ILE B 72 0 SHEET 2 AA4 5 PRO B 63 ILE B 66 -1 N ILE B 66 O HIS B 69 SHEET 3 AA4 5 PHE B 10 VAL B 15 -1 N LYS B 14 O GLU B 65 SHEET 4 AA4 5 GLN B 18 LEU B 24 -1 O LYS B 20 N VAL B 13 SHEET 5 AA4 5 VAL B 84 ILE B 85 1 O ILE B 85 N LEU B 23 SHEET 1 AA5 4 ILE B 32 PHE B 33 0 SHEET 2 AA5 4 VAL B 75 VAL B 77 1 O LEU B 76 N PHE B 33 SHEET 3 AA5 4 GLY B 52 TYR B 59 -1 N TYR B 59 O VAL B 75 SHEET 4 AA5 4 LYS B 43 GLY B 49 -1 N LYS B 45 O VAL B 56 LINK OD1 ASP A 35 Y Y1 A 202 1555 1555 2.66 LINK OD2 ASP A 35 Y Y1 A 202 1555 1555 2.30 LINK OD2 ASP A 35 Y Y1 A 203 1555 1555 2.57 LINK OE2 GLU A 58 Y Y1 A 202 1555 6555 2.32 LINK OE2 GLU A 58 Y Y1 A 203 1555 6555 2.23 LINK OD1AASP A 60 Y Y1 A 202 1555 6555 2.98 LINK OD2AASP A 60 Y Y1 A 202 1555 6555 3.11 LINK OD1AASP A 60 Y Y1 A 203 1555 6555 2.64 LINK OD2AASP A 60 Y Y1 A 203 1555 6555 2.25 LINK OG1 THR A 89 NA NA A 207 1555 1555 2.73 LINK Y Y1 A 202 O HOH A 308 1555 1555 3.20 LINK Y Y1 A 202 O HOH A 357 1555 1555 2.65 LINK NA NA A 207 O HOH A 312 1555 1555 2.70 LINK NA NA A 207 O HOH A 366 1555 1555 3.13 LINK OD1 ASP B 35 Y Y1 B 101 1555 1555 2.24 LINK OD2 ASP B 35 Y Y1 B 101 1555 1555 2.66 LINK OD1 ASP B 35 Y Y1 B 102 1555 1555 2.57 LINK NZ LYS B 43 Y Y1 B 101 1555 5554 3.41 LINK NZ LYS B 43 Y Y1 B 102 1555 5554 2.64 LINK OE2 GLU B 58 Y Y1 B 101 1555 5554 2.07 LINK OE1 GLU B 58 Y Y1 B 102 1555 5554 3.42 LINK OE2 GLU B 58 Y Y1 B 102 1555 5554 2.20 LINK OD1AASP B 60 Y Y1 B 101 1555 5554 3.07 LINK OD1AASP B 60 Y Y1 B 102 1555 5554 2.60 LINK OD2AASP B 60 Y Y1 B 102 1555 5554 2.53 LINK Y Y1 B 101 O HOH B 205 1555 1555 3.21 LINK Y Y1 B 101 O HOH B 234 1555 1555 2.34 LINK Y Y1 B 101 O HOH B 272 1555 1555 2.59 LINK Y Y1 B 102 O HOH B 210 1555 1555 2.86 SITE 1 AC1 29 LEU A 23 ASP A 25 GLY A 27 ALA A 28 SITE 2 AC1 29 ASP A 29 ASN A 30 ILE A 32 GLY A 48 SITE 3 AC1 29 GLY A 49 ILE A 50 VAL A 82 HOH A 302 SITE 4 AC1 29 HOH A 303 HOH A 304 HOH A 305 HOH A 341 SITE 5 AC1 29 ASP B 25 GLY B 27 ALA B 28 ASP B 29 SITE 6 AC1 29 ASN B 30 ILE B 32 GLY B 48 GLY B 49 SITE 7 AC1 29 ILE B 50 VAL B 82 HOH B 202 HOH B 212 SITE 8 AC1 29 HOH B 238 SITE 1 AC2 8 GLU A 34 ASP A 35 GLU A 58 ASP A 60 SITE 2 AC2 8 Y1 A 203 CL A 204 CL A 205 HOH A 357 SITE 1 AC3 6 ASP A 35 GLU A 58 ASP A 60 Y1 A 202 SITE 2 AC3 6 CL A 204 CL A 205 SITE 1 AC4 8 GLU A 34 ASP A 35 LYS A 45 GLU A 58 SITE 2 AC4 8 Y1 A 202 Y1 A 203 HOH A 308 HOH A 357 SITE 1 AC5 5 ASP A 35 GLU A 58 ASP A 60 Y1 A 202 SITE 2 AC5 5 Y1 A 203 SITE 1 AC6 3 LYS A 7 ARG A 8 HOH A 330 SITE 1 AC7 5 GLY A 73 THR A 74 THR A 89 GLN A 92 SITE 2 AC7 5 HOH A 312 SITE 1 AC8 5 PRO A 1 GLN A 2 GLY A 40 GLN A 61 SITE 2 AC8 5 HOH A 362 SITE 1 AC9 9 GLU B 34 ASP B 35 LYS B 43 GLU B 58 SITE 2 AC9 9 ASP B 60 Y1 B 102 HOH B 210 HOH B 234 SITE 3 AC9 9 HOH B 272 SITE 1 AD1 7 ASP B 35 LYS B 43 GLU B 58 ASP B 60 SITE 2 AD1 7 Y1 B 101 HOH B 210 HOH B 272 SITE 1 AD2 4 GLY B 16 GLY B 17 HOH B 245 HOH B 284 SITE 1 AD3 3 LYS B 7 ARG B 8 HOH B 247 SITE 1 AD4 4 TRP A 6 ARG B 87 ASP B 88 HOH B 208 CRYST1 60.303 60.303 86.141 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016583 0.009574 0.000000 0.00000 SCALE2 0.000000 0.019148 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011609 0.00000