HEADER OXIDOREDUCTASE 02-MAR-15 4YIP TITLE X-RAY STRUCTURE OF THE IRON/MANGANESE CAMBIALISTIC SUPEROXIDE TITLE 2 DISMUTASE FROM STREPTOCOCCUS MUTANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [MN/FE]; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS MUTANS; SOURCE 3 ORGANISM_TAXID: 1309; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE, CAMBIALISTIC EXPDTA X-RAY DIFFRACTION AUTHOR I.RUSSO KRAUSS,A.MERLINO,A.PICA,F.SICA REVDAT 2 10-JAN-24 4YIP 1 LINK REVDAT 1 13-JAN-16 4YIP 0 JRNL AUTH I.RUSSO KRAUSS,A.MERLINO,A.PICA,R.RULLO,A.BERTONI,A.CAPASSO, JRNL AUTH 2 M.AMATO,F.RICCITIELLO,E.DE VENDITTIS,F.SICA JRNL TITL FINE TUNING OF METAL-SPECIFIC ACTIVITY IN THE MN-LIKE GROUP JRNL TITL 2 OF CAMBIALISTIC SUPEROXIDE DISMUTASES JRNL REF RSC ADV V. 5 87876 2015 JRNL REFN ESSN 2046-2069 JRNL DOI 10.1039/C5RA13559A REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 41189 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2181 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2842 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 156 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6395 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 277 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.40000 REMARK 3 B22 (A**2) : 1.11000 REMARK 3 B33 (A**2) : 0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.62000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.290 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.229 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.424 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6593 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9026 ; 1.731 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 814 ; 6.670 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 321 ;35.700 ;25.016 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1001 ;15.977 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.204 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1014 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5112 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4YIP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000206885. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43458 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3LIO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28-33% PEG 8000, 0.1 M SODIUM REMARK 280 CACODYLATE BUFFER AT PH 6.0, 3% ACETONITRILE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.43950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 HIS A 204 REMARK 465 HIS A 205 REMARK 465 HIS A 206 REMARK 465 HIS A 207 REMARK 465 HIS A 208 REMARK 465 HIS A 209 REMARK 465 MET B 0 REMARK 465 HIS B 204 REMARK 465 HIS B 205 REMARK 465 HIS B 206 REMARK 465 HIS B 207 REMARK 465 HIS B 208 REMARK 465 HIS B 209 REMARK 465 MET C 0 REMARK 465 LEU C 202 REMARK 465 GLU C 203 REMARK 465 HIS C 204 REMARK 465 HIS C 205 REMARK 465 HIS C 206 REMARK 465 HIS C 207 REMARK 465 HIS C 208 REMARK 465 HIS C 209 REMARK 465 MET D 0 REMARK 465 HIS D 204 REMARK 465 HIS D 205 REMARK 465 HIS D 206 REMARK 465 HIS D 207 REMARK 465 HIS D 208 REMARK 465 HIS D 209 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 162 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 146 -113.37 53.62 REMARK 500 TYR A 168 -5.02 -145.44 REMARK 500 ARG A 173 -130.73 57.99 REMARK 500 PRO B 8 38.68 -87.77 REMARK 500 LYS B 29 -62.94 -108.82 REMARK 500 GLU B 50 15.69 -142.09 REMARK 500 ASN B 146 -119.46 56.94 REMARK 500 ARG B 173 -129.50 51.14 REMARK 500 GLU C 136 34.84 -93.38 REMARK 500 ASN C 146 -124.66 53.28 REMARK 500 TYR C 168 -14.07 -150.11 REMARK 500 ARG C 173 -136.28 47.70 REMARK 500 ASN D 146 -123.06 48.78 REMARK 500 TYR D 168 -4.40 -144.32 REMARK 500 ARG D 173 -140.57 50.94 REMARK 500 LEU D 202 -61.74 161.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 26 NE2 REMARK 620 2 HIS A 80 NE2 85.3 REMARK 620 3 ASP A 162 OD2 88.3 94.6 REMARK 620 4 HIS A 166 NE2 89.4 140.4 124.5 REMARK 620 5 HOH A 412 O 178.0 95.2 89.8 91.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 26 NE2 REMARK 620 2 HIS B 80 NE2 81.1 REMARK 620 3 ASP B 162 OD2 82.6 108.4 REMARK 620 4 HIS B 166 NE2 96.4 135.7 115.2 REMARK 620 5 HOH B 415 O 174.4 98.0 92.4 88.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE C 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 26 NE2 REMARK 620 2 HIS C 80 NE2 88.8 REMARK 620 3 ASP C 162 OD2 88.5 108.9 REMARK 620 4 HIS C 166 NE2 105.1 138.5 110.3 REMARK 620 5 HOH C 410 O 169.6 89.9 82.1 82.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE D 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 26 NE2 REMARK 620 2 HIS D 80 NE2 93.4 REMARK 620 3 ASP D 162 OD2 87.4 102.3 REMARK 620 4 HIS D 166 NE2 89.3 137.8 119.9 REMARK 620 5 HOH D 418 O 168.0 95.1 82.4 90.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE D 301 DBREF 4YIP A 0 201 UNP P09738 SODM_STRMU 1 202 DBREF 4YIP B 0 201 UNP P09738 SODM_STRMU 1 202 DBREF 4YIP C 0 201 UNP P09738 SODM_STRMU 1 202 DBREF 4YIP D 0 201 UNP P09738 SODM_STRMU 1 202 SEQADV 4YIP LEU A 202 UNP P09738 EXPRESSION TAG SEQADV 4YIP GLU A 203 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS A 204 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS A 205 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS A 206 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS A 207 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS A 208 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS A 209 UNP P09738 EXPRESSION TAG SEQADV 4YIP LEU B 202 UNP P09738 EXPRESSION TAG SEQADV 4YIP GLU B 203 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS B 204 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS B 205 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS B 206 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS B 207 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS B 208 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS B 209 UNP P09738 EXPRESSION TAG SEQADV 4YIP LEU C 202 UNP P09738 EXPRESSION TAG SEQADV 4YIP GLU C 203 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS C 204 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS C 205 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS C 206 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS C 207 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS C 208 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS C 209 UNP P09738 EXPRESSION TAG SEQADV 4YIP LEU D 202 UNP P09738 EXPRESSION TAG SEQADV 4YIP GLU D 203 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS D 204 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS D 205 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS D 206 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS D 207 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS D 208 UNP P09738 EXPRESSION TAG SEQADV 4YIP HIS D 209 UNP P09738 EXPRESSION TAG SEQRES 1 A 210 MET ALA ILE LEU LEU PRO ASP LEU PRO TYR ALA TYR ASP SEQRES 2 A 210 ALA LEU GLU PRO TYR ILE ASP ALA GLU THR MET THR LEU SEQRES 3 A 210 HIS HIS ASP LYS HIS HIS ALA THR TYR VAL ALA ASN ALA SEQRES 4 A 210 ASN ALA ALA LEU GLU LYS HIS PRO GLU ILE GLY GLU ASN SEQRES 5 A 210 LEU GLU VAL LEU LEU ALA ASP VAL GLU GLN ILE PRO ALA SEQRES 6 A 210 ASP ILE ARG GLN SER LEU ILE ASN ASN GLY GLY GLY HIS SEQRES 7 A 210 LEU ASN HIS ALA LEU PHE TRP GLU LEU LEU SER PRO GLU SEQRES 8 A 210 LYS THR LYS VAL THR ALA GLU VAL ALA ALA ALA ILE ASN SEQRES 9 A 210 GLU ALA PHE GLY SER PHE ASP ASP PHE LYS ALA ALA PHE SEQRES 10 A 210 THR ALA ALA ALA THR THR ARG PHE GLY SER GLY TRP ALA SEQRES 11 A 210 TRP LEU VAL VAL ASP LYS GLU GLY LYS LEU GLU VAL THR SEQRES 12 A 210 SER THR ALA ASN GLN ASP THR PRO ILE SER GLN GLY LEU SEQRES 13 A 210 LYS PRO ILE LEU ALA LEU ASP VAL TRP GLU HIS ALA TYR SEQRES 14 A 210 TYR LEU ASN TYR ARG ASN VAL ARG PRO ASN TYR ILE LYS SEQRES 15 A 210 ALA PHE PHE GLU VAL ILE ASN TRP ASN THR VAL ALA ARG SEQRES 16 A 210 LEU TYR ALA GLU ALA LEU THR LEU GLU HIS HIS HIS HIS SEQRES 17 A 210 HIS HIS SEQRES 1 B 210 MET ALA ILE LEU LEU PRO ASP LEU PRO TYR ALA TYR ASP SEQRES 2 B 210 ALA LEU GLU PRO TYR ILE ASP ALA GLU THR MET THR LEU SEQRES 3 B 210 HIS HIS ASP LYS HIS HIS ALA THR TYR VAL ALA ASN ALA SEQRES 4 B 210 ASN ALA ALA LEU GLU LYS HIS PRO GLU ILE GLY GLU ASN SEQRES 5 B 210 LEU GLU VAL LEU LEU ALA ASP VAL GLU GLN ILE PRO ALA SEQRES 6 B 210 ASP ILE ARG GLN SER LEU ILE ASN ASN GLY GLY GLY HIS SEQRES 7 B 210 LEU ASN HIS ALA LEU PHE TRP GLU LEU LEU SER PRO GLU SEQRES 8 B 210 LYS THR LYS VAL THR ALA GLU VAL ALA ALA ALA ILE ASN SEQRES 9 B 210 GLU ALA PHE GLY SER PHE ASP ASP PHE LYS ALA ALA PHE SEQRES 10 B 210 THR ALA ALA ALA THR THR ARG PHE GLY SER GLY TRP ALA SEQRES 11 B 210 TRP LEU VAL VAL ASP LYS GLU GLY LYS LEU GLU VAL THR SEQRES 12 B 210 SER THR ALA ASN GLN ASP THR PRO ILE SER GLN GLY LEU SEQRES 13 B 210 LYS PRO ILE LEU ALA LEU ASP VAL TRP GLU HIS ALA TYR SEQRES 14 B 210 TYR LEU ASN TYR ARG ASN VAL ARG PRO ASN TYR ILE LYS SEQRES 15 B 210 ALA PHE PHE GLU VAL ILE ASN TRP ASN THR VAL ALA ARG SEQRES 16 B 210 LEU TYR ALA GLU ALA LEU THR LEU GLU HIS HIS HIS HIS SEQRES 17 B 210 HIS HIS SEQRES 1 C 210 MET ALA ILE LEU LEU PRO ASP LEU PRO TYR ALA TYR ASP SEQRES 2 C 210 ALA LEU GLU PRO TYR ILE ASP ALA GLU THR MET THR LEU SEQRES 3 C 210 HIS HIS ASP LYS HIS HIS ALA THR TYR VAL ALA ASN ALA SEQRES 4 C 210 ASN ALA ALA LEU GLU LYS HIS PRO GLU ILE GLY GLU ASN SEQRES 5 C 210 LEU GLU VAL LEU LEU ALA ASP VAL GLU GLN ILE PRO ALA SEQRES 6 C 210 ASP ILE ARG GLN SER LEU ILE ASN ASN GLY GLY GLY HIS SEQRES 7 C 210 LEU ASN HIS ALA LEU PHE TRP GLU LEU LEU SER PRO GLU SEQRES 8 C 210 LYS THR LYS VAL THR ALA GLU VAL ALA ALA ALA ILE ASN SEQRES 9 C 210 GLU ALA PHE GLY SER PHE ASP ASP PHE LYS ALA ALA PHE SEQRES 10 C 210 THR ALA ALA ALA THR THR ARG PHE GLY SER GLY TRP ALA SEQRES 11 C 210 TRP LEU VAL VAL ASP LYS GLU GLY LYS LEU GLU VAL THR SEQRES 12 C 210 SER THR ALA ASN GLN ASP THR PRO ILE SER GLN GLY LEU SEQRES 13 C 210 LYS PRO ILE LEU ALA LEU ASP VAL TRP GLU HIS ALA TYR SEQRES 14 C 210 TYR LEU ASN TYR ARG ASN VAL ARG PRO ASN TYR ILE LYS SEQRES 15 C 210 ALA PHE PHE GLU VAL ILE ASN TRP ASN THR VAL ALA ARG SEQRES 16 C 210 LEU TYR ALA GLU ALA LEU THR LEU GLU HIS HIS HIS HIS SEQRES 17 C 210 HIS HIS SEQRES 1 D 210 MET ALA ILE LEU LEU PRO ASP LEU PRO TYR ALA TYR ASP SEQRES 2 D 210 ALA LEU GLU PRO TYR ILE ASP ALA GLU THR MET THR LEU SEQRES 3 D 210 HIS HIS ASP LYS HIS HIS ALA THR TYR VAL ALA ASN ALA SEQRES 4 D 210 ASN ALA ALA LEU GLU LYS HIS PRO GLU ILE GLY GLU ASN SEQRES 5 D 210 LEU GLU VAL LEU LEU ALA ASP VAL GLU GLN ILE PRO ALA SEQRES 6 D 210 ASP ILE ARG GLN SER LEU ILE ASN ASN GLY GLY GLY HIS SEQRES 7 D 210 LEU ASN HIS ALA LEU PHE TRP GLU LEU LEU SER PRO GLU SEQRES 8 D 210 LYS THR LYS VAL THR ALA GLU VAL ALA ALA ALA ILE ASN SEQRES 9 D 210 GLU ALA PHE GLY SER PHE ASP ASP PHE LYS ALA ALA PHE SEQRES 10 D 210 THR ALA ALA ALA THR THR ARG PHE GLY SER GLY TRP ALA SEQRES 11 D 210 TRP LEU VAL VAL ASP LYS GLU GLY LYS LEU GLU VAL THR SEQRES 12 D 210 SER THR ALA ASN GLN ASP THR PRO ILE SER GLN GLY LEU SEQRES 13 D 210 LYS PRO ILE LEU ALA LEU ASP VAL TRP GLU HIS ALA TYR SEQRES 14 D 210 TYR LEU ASN TYR ARG ASN VAL ARG PRO ASN TYR ILE LYS SEQRES 15 D 210 ALA PHE PHE GLU VAL ILE ASN TRP ASN THR VAL ALA ARG SEQRES 16 D 210 LEU TYR ALA GLU ALA LEU THR LEU GLU HIS HIS HIS HIS SEQRES 17 D 210 HIS HIS HET FE A 301 1 HET FE B 301 1 HET FE C 301 1 HET FE D 301 1 HETNAM FE FE (III) ION FORMUL 5 FE 4(FE 3+) FORMUL 9 HOH *277(H2 O) HELIX 1 AA1 ASP A 19 LYS A 29 1 11 HELIX 2 AA2 LYS A 29 HIS A 45 1 17 HELIX 3 AA3 PRO A 46 GLY A 49 5 4 HELIX 4 AA4 ASN A 51 ASP A 58 1 8 HELIX 5 AA5 VAL A 59 ILE A 62 5 4 HELIX 6 AA6 PRO A 63 LEU A 87 1 25 HELIX 7 AA7 THR A 95 GLY A 107 1 13 HELIX 8 AA8 SER A 108 ARG A 123 1 16 HELIX 9 AA9 THR A 149 GLY A 154 5 6 HELIX 10 AB1 TRP A 164 ALA A 167 5 4 HELIX 11 AB2 TYR A 168 ARG A 173 1 6 HELIX 12 AB3 VAL A 175 PHE A 184 1 10 HELIX 13 AB4 GLU A 185 ILE A 187 5 3 HELIX 14 AB5 ASN A 188 LEU A 202 1 15 HELIX 15 AB6 ASP B 19 LYS B 29 1 11 HELIX 16 AB7 LYS B 29 LYS B 44 1 16 HELIX 17 AB8 HIS B 45 GLY B 49 5 5 HELIX 18 AB9 ASN B 51 LEU B 56 1 6 HELIX 19 AC1 ALA B 57 ILE B 62 5 6 HELIX 20 AC2 PRO B 63 LEU B 86 1 24 HELIX 21 AC3 THR B 95 GLY B 107 1 13 HELIX 22 AC4 SER B 108 THR B 122 1 15 HELIX 23 AC5 THR B 149 GLY B 154 5 6 HELIX 24 AC6 TRP B 164 ALA B 167 5 4 HELIX 25 AC7 TYR B 168 ARG B 173 1 6 HELIX 26 AC8 VAL B 175 ILE B 187 1 13 HELIX 27 AC9 ASN B 188 LEU B 202 1 15 HELIX 28 AD1 ASP C 19 LYS C 29 1 11 HELIX 29 AD2 LYS C 29 GLU C 43 1 15 HELIX 30 AD3 LYS C 44 GLY C 49 5 6 HELIX 31 AD4 ASN C 51 ASP C 58 1 8 HELIX 32 AD5 VAL C 59 ILE C 62 5 4 HELIX 33 AD6 PRO C 63 ASP C 65 5 3 HELIX 34 AD7 ILE C 66 LEU C 87 1 22 HELIX 35 AD8 THR C 95 GLY C 107 1 13 HELIX 36 AD9 SER C 108 THR C 122 1 15 HELIX 37 AE1 THR C 149 GLY C 154 5 6 HELIX 38 AE2 TRP C 164 ALA C 167 5 4 HELIX 39 AE3 TYR C 168 ARG C 173 1 6 HELIX 40 AE4 VAL C 175 VAL C 186 1 12 HELIX 41 AE5 ASN C 188 THR C 201 1 14 HELIX 42 AE6 ASP D 19 LYS D 29 1 11 HELIX 43 AE7 LYS D 29 GLU D 43 1 15 HELIX 44 AE8 LYS D 44 GLY D 49 5 6 HELIX 45 AE9 ASN D 51 LEU D 56 1 6 HELIX 46 AF1 ALA D 57 ILE D 62 5 6 HELIX 47 AF2 ILE D 66 LEU D 87 1 22 HELIX 48 AF3 THR D 95 GLY D 107 1 13 HELIX 49 AF4 SER D 108 ARG D 123 1 16 HELIX 50 AF5 THR D 149 GLY D 154 5 6 HELIX 51 AF6 TRP D 164 ALA D 167 5 4 HELIX 52 AF7 TYR D 168 ARG D 173 1 6 HELIX 53 AF8 VAL D 175 PHE D 184 1 10 HELIX 54 AF9 ASN D 188 LEU D 200 1 13 SHEET 1 AA1 3 LEU A 139 ALA A 145 0 SHEET 2 AA1 3 GLY A 127 VAL A 133 -1 N VAL A 132 O GLU A 140 SHEET 3 AA1 3 LYS A 156 ASP A 162 -1 O ILE A 158 N LEU A 131 SHEET 1 AA2 3 LEU B 139 ALA B 145 0 SHEET 2 AA2 3 GLY B 127 VAL B 133 -1 N TRP B 130 O THR B 142 SHEET 3 AA2 3 LYS B 156 ASP B 162 -1 O ILE B 158 N LEU B 131 SHEET 1 AA3 3 LEU C 139 ALA C 145 0 SHEET 2 AA3 3 GLY C 127 VAL C 133 -1 N TRP C 130 O THR C 142 SHEET 3 AA3 3 LYS C 156 ASP C 162 -1 O ILE C 158 N LEU C 131 SHEET 1 AA4 3 LEU D 139 ALA D 145 0 SHEET 2 AA4 3 GLY D 127 VAL D 133 -1 N VAL D 132 O GLU D 140 SHEET 3 AA4 3 LYS D 156 ASP D 162 -1 O LEU D 161 N ALA D 129 LINK NE2 HIS A 26 FE FE A 301 1555 1555 2.15 LINK NE2 HIS A 80 FE FE A 301 1555 1555 2.20 LINK OD2 ASP A 162 FE FE A 301 1555 1555 1.94 LINK NE2 HIS A 166 FE FE A 301 1555 1555 2.28 LINK FE FE A 301 O HOH A 412 1555 1555 2.15 LINK NE2 HIS B 26 FE FE B 301 1555 1555 2.23 LINK NE2 HIS B 80 FE FE B 301 1555 1555 2.29 LINK OD2 ASP B 162 FE FE B 301 1555 1555 2.03 LINK NE2 HIS B 166 FE FE B 301 1555 1555 2.37 LINK FE FE B 301 O HOH B 415 1555 1555 2.25 LINK NE2 HIS C 26 FE FE C 301 1555 1555 2.07 LINK NE2 HIS C 80 FE FE C 301 1555 1555 2.28 LINK OD2 ASP C 162 FE FE C 301 1555 1555 2.08 LINK NE2 HIS C 166 FE FE C 301 1555 1555 2.35 LINK FE FE C 301 O HOH C 410 1555 1555 2.28 LINK NE2 HIS D 26 FE FE D 301 1555 1555 2.16 LINK NE2 HIS D 80 FE FE D 301 1555 1555 2.27 LINK OD2 ASP D 162 FE FE D 301 1555 1555 1.98 LINK NE2 HIS D 166 FE FE D 301 1555 1555 2.25 LINK FE FE D 301 O HOH D 418 1555 1555 2.01 CISPEP 1 GLU A 15 PRO A 16 0 2.62 CISPEP 2 GLU B 15 PRO B 16 0 -4.30 CISPEP 3 GLU C 15 PRO C 16 0 -4.50 CISPEP 4 GLU D 15 PRO D 16 0 2.67 SITE 1 AC1 6 HIS A 26 HIS A 80 ASP A 162 HIS A 166 SITE 2 AC1 6 HOH A 412 HOH A 470 SITE 1 AC2 5 HIS B 26 HIS B 80 ASP B 162 HIS B 166 SITE 2 AC2 5 HOH B 415 SITE 1 AC3 5 HIS C 26 HIS C 80 ASP C 162 HIS C 166 SITE 2 AC3 5 HOH C 410 SITE 1 AC4 5 HIS D 26 HIS D 80 ASP D 162 HIS D 166 SITE 2 AC4 5 HOH D 418 CRYST1 67.964 82.879 72.779 90.00 94.25 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014714 0.000000 0.001092 0.00000 SCALE2 0.000000 0.012066 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013778 0.00000