HEADER RNA BINDING PROTEIN 02-MAR-15 4YIX TITLE STRUCTURE OF MRB1590 BOUND TO ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI (STRAIN 927/4 SOURCE 3 GUTAT10.1); SOURCE 4 ORGANISM_TAXID: 185431; SOURCE 5 STRAIN: 927/4 GUTAT10.1; SOURCE 6 GENE: TB927.3.1590; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KRNA EDITING, MRB1590, ATPASE, RNA BINDING, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.L.R.SHAW,M.A.SCHUMACHER REVDAT 3 28-FEB-24 4YIX 1 JRNL REMARK LINK REVDAT 2 26-AUG-15 4YIX 1 JRNL REVDAT 1 12-AUG-15 4YIX 0 JRNL AUTH P.L.SHAW,N.M.MCADAMS,M.A.HAST,M.L.AMMERMAN,L.K.READ, JRNL AUTH 2 M.A.SCHUMACHER JRNL TITL STRUCTURES OF THE T. BRUCEI KRNA EDITING FACTOR MRB1590 JRNL TITL 2 REVEAL UNIQUE RNA-BINDING PORE MOTIF CONTAINED WITHIN AN JRNL TITL 3 ABC-ATPASE FOLD. JRNL REF NUCLEIC ACIDS RES. V. 43 7096 2015 JRNL REFN ESSN 1362-4962 JRNL PMID 26117548 JRNL DOI 10.1093/NAR/GKV647 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.620 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 20596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.650 REMARK 3 FREE R VALUE TEST SET COUNT : 1987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.6009 - 6.2382 0.96 1486 167 0.2200 0.2630 REMARK 3 2 6.2382 - 4.9633 0.96 1434 150 0.2012 0.2840 REMARK 3 3 4.9633 - 4.3393 0.98 1444 156 0.1730 0.2113 REMARK 3 4 4.3393 - 3.9441 0.98 1420 153 0.1707 0.1876 REMARK 3 5 3.9441 - 3.6623 0.98 1432 147 0.1838 0.2538 REMARK 3 6 3.6623 - 3.4469 0.97 1418 147 0.2084 0.2700 REMARK 3 7 3.4469 - 3.2747 0.95 1391 141 0.2124 0.2743 REMARK 3 8 3.2747 - 3.1324 0.93 1315 147 0.2168 0.3017 REMARK 3 9 3.1324 - 3.0120 0.91 1316 138 0.2242 0.2845 REMARK 3 10 3.0120 - 2.9082 0.90 1300 140 0.2304 0.2931 REMARK 3 11 2.9082 - 2.8174 0.87 1236 134 0.2305 0.3057 REMARK 3 12 2.8174 - 2.7369 0.84 1204 132 0.2201 0.3026 REMARK 3 13 2.7369 - 2.6650 0.80 1160 120 0.2266 0.2913 REMARK 3 14 2.6650 - 2.6000 0.74 1053 115 0.2130 0.2819 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4530 REMARK 3 ANGLE : 1.017 6148 REMARK 3 CHIRALITY : 0.039 710 REMARK 3 PLANARITY : 0.004 806 REMARK 3 DIHEDRAL : 16.003 1672 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YIX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207514. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20596 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 25.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : 0.60300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM/POTASSIUM TARTRATE, PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.81950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.81950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.79200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 92.35450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.79200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 92.35450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.81950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.79200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 92.35450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.81950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.79200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 92.35450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -626.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -105.58400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -36.81950 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 901 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 HIS A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 5 REMARK 465 TYR A 6 REMARK 465 GLY A 7 REMARK 465 GLY A 8 REMARK 465 HIS A 9 REMARK 465 TYR A 10 REMARK 465 ARG A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 ARG A 14 REMARK 465 GLY A 15 REMARK 465 GLY A 16 REMARK 465 GLY A 17 REMARK 465 ARG A 18 REMARK 465 GLY A 19 REMARK 465 HIS A 20 REMARK 465 SER A 21 REMARK 465 HIS A 22 REMARK 465 TRP A 23 REMARK 465 HIS A 24 REMARK 465 ASN A 25 REMARK 465 ASN A 26 REMARK 465 ALA A 27 REMARK 465 PRO A 28 REMARK 465 MET A 29 REMARK 465 GLU A 30 REMARK 465 ARG A 31 REMARK 465 GLY A 32 REMARK 465 GLY A 33 REMARK 465 HIS A 34 REMARK 465 MET A 35 REMARK 465 PRO A 36 REMARK 465 SER A 37 REMARK 465 ASN A 38 REMARK 465 ASN A 39 REMARK 465 GLU A 40 REMARK 465 GLY A 41 REMARK 465 ALA A 42 REMARK 465 ALA A 43 REMARK 465 ILE A 44 REMARK 465 SER A 45 REMARK 465 SER A 46 REMARK 465 GLY A 47 REMARK 465 SER A 48 REMARK 465 THR A 49 REMARK 465 GLY A 50 REMARK 465 PHE A 51 REMARK 465 ALA A 175 REMARK 465 HIS A 176 REMARK 465 GLN A 177 REMARK 465 GLN A 178 REMARK 465 LYS A 179 REMARK 465 SER A 180 REMARK 465 GLY A 181 REMARK 465 MET A 182 REMARK 465 GLN A 183 REMARK 465 ALA A 184 REMARK 465 HIS A 197 REMARK 465 LEU A 494 REMARK 465 PRO A 495 REMARK 465 ALA A 496 REMARK 465 LEU A 497 REMARK 465 ASN A 498 REMARK 465 PRO A 499 REMARK 465 PRO A 500 REMARK 465 GLY A 501 REMARK 465 ASP A 502 REMARK 465 THR A 503 REMARK 465 ALA A 504 REMARK 465 ARG A 526 REMARK 465 ARG A 527 REMARK 465 ARG A 528 REMARK 465 GLY A 529 REMARK 465 ARG A 530 REMARK 465 GLU A 531 REMARK 465 GLY A 532 REMARK 465 GLU A 603 REMARK 465 ILE A 604 REMARK 465 GLN A 605 REMARK 465 ARG A 606 REMARK 465 GLY A 607 REMARK 465 LYS A 608 REMARK 465 ALA A 666 REMARK 465 LYS A 667 REMARK 465 ARG A 668 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 107 HG HG A 705 0.12 REMARK 500 SG CYS A 514 HG HG A 709 0.26 REMARK 500 SG CYS A 221 HG HG A 712 0.55 REMARK 500 SG CYS A 570 MG MG A 702 1.17 REMARK 500 SG CYS A 620 MG MG A 703 1.55 REMARK 500 O ARG A 70 OG1 THR A 73 2.16 REMARK 500 O HOH A 829 O HOH A 896 2.17 REMARK 500 O THR A 291 O HOH A 801 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 354 CD GLU A 354 OE1 -0.074 REMARK 500 CYS A 514 CA CYS A 514 CB 0.165 REMARK 500 CYS A 514 CB CYS A 514 SG 0.119 REMARK 500 CYS A 620 CB CYS A 620 SG 0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 94 C - N - CD ANGL. DEV. = -13.0 DEGREES REMARK 500 PRO A 97 C - N - CD ANGL. DEV. = 12.9 DEGREES REMARK 500 PRO A 97 CB - CA - C ANGL. DEV. = -22.6 DEGREES REMARK 500 PRO A 97 N - CA - C ANGL. DEV. = -22.7 DEGREES REMARK 500 CYS A 107 CA - CB - SG ANGL. DEV. = 15.3 DEGREES REMARK 500 CYS A 221 CB - CA - C ANGL. DEV. = 8.6 DEGREES REMARK 500 CYS A 221 CA - CB - SG ANGL. DEV. = 13.3 DEGREES REMARK 500 ARG A 352 O - C - N ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG A 513 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 CYS A 514 N - CA - CB ANGL. DEV. = 12.3 DEGREES REMARK 500 CYS A 514 CA - CB - SG ANGL. DEV. = 20.9 DEGREES REMARK 500 CYS A 570 N - CA - CB ANGL. DEV. = 10.3 DEGREES REMARK 500 LEU A 592 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 CYS A 620 CA - CB - SG ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 64 170.51 -59.14 REMARK 500 GLN A 116 -57.58 74.61 REMARK 500 GLU A 213 -63.91 -123.16 REMARK 500 ARG A 356 1.54 83.40 REMARK 500 ASP A 384 84.34 -151.69 REMARK 500 TYR A 476 7.03 80.27 REMARK 500 SER A 546 -125.42 56.12 REMARK 500 LEU A 629 -12.03 74.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 198 ARG A 199 -141.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 708 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 481 SG REMARK 620 2 HOH A 903 O 134.0 REMARK 620 3 HOH A 909 O 60.0 151.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 710 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 621 O REMARK 620 2 CYS A 621 SG 77.8 REMARK 620 3 HOH A 907 O 100.7 123.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 711 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 636 SG REMARK 620 2 HOH A 904 O 157.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 712 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 713 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 714 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 715 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YIY RELATED DB: PDB DBREF 4YIX A 1 668 UNP Q57ZF2 Q57ZF2_TRYB2 1 668 SEQADV 4YIX GLU A 242 UNP Q57ZF2 VAL 242 CONFLICT SEQRES 1 A 668 MET TYR HIS ARG GLY TYR GLY GLY HIS TYR ARG GLY GLY SEQRES 2 A 668 ARG GLY GLY GLY ARG GLY HIS SER HIS TRP HIS ASN ASN SEQRES 3 A 668 ALA PRO MET GLU ARG GLY GLY HIS MET PRO SER ASN ASN SEQRES 4 A 668 GLU GLY ALA ALA ILE SER SER GLY SER THR GLY PHE SER SEQRES 5 A 668 PRO LEU MET ASP PHE PHE HIS SER VAL GLU GLY ARG ASN SEQRES 6 A 668 TYR GLY GLU LEU ARG SER LEU THR ASN GLU THR TYR GLN SEQRES 7 A 668 ILE SER GLU ASN VAL ARG CYS THR PHE LEU SER ILE GLN SEQRES 8 A 668 SER ASP PRO PHE ALA PRO GLY SER GLN VAL ARG LEU VAL SEQRES 9 A 668 CYS PRO CYS THR PHE SER LEU GLU LYS VAL LEU GLN THR SEQRES 10 A 668 THR ASP LEU ALA ALA ALA ASN PRO CYS ARG ARG VAL ALA SEQRES 11 A 668 ALA GLU ASP PHE ILE LEU ARG SER PHE HIS ALA GLY TYR SEQRES 12 A 668 ARG ASN GLY ILE PRO ARG ARG THR SER GLY ALA VAL GLN SEQRES 13 A 668 VAL LEU ARG PRO SER GLN HIS VAL LEU GLU ARG SER THR SEQRES 14 A 668 VAL GLY LEU VAL LYS ALA HIS GLN GLN LYS SER GLY MET SEQRES 15 A 668 GLN ALA GLU ILE GLU ILE PHE ALA ARG VAL LYS LEU PRO SEQRES 16 A 668 GLY HIS GLY ARG ARG ILE ASP GLY HIS GLY ALA ILE ASP SEQRES 17 A 668 ILE PHE TYR ASN GLU LEU VAL PRO LEU LEU GLU GLN CYS SEQRES 18 A 668 VAL VAL GLY LEU ASN GLU GLU ASP LEU HIS GLN HIS VAL SEQRES 19 A 668 ILE CYS VAL HIS ASP GLN GLU GLU LEU ARG SER ASN LEU SEQRES 20 A 668 LEU GLY ALA GLY TYR VAL ALA PHE VAL ALA ASN GLY ALA SEQRES 21 A 668 ILE LEU PRO ARG ASP ALA GLY ASN SER ASP LYS PRO LEU SEQRES 22 A 668 ARG ASP ASN ALA VAL PRO PHE GLN SER PRO LYS SER LEU SEQRES 23 A 668 GLU CYS SER PHE THR LEU PRO HIS SER GLY LYS THR ILE SEQRES 24 A 668 THR GLY MET GLY LEU PRO PRO GLY LEU THR LEU ILE ALA SEQRES 25 A 668 GLY GLY GLY PHE HIS GLY LYS SER THR LEU LEU ARG ALA SEQRES 26 A 668 LEU GLU VAL GLY ILE TYR ASN HIS VAL PRO ASP ASP GLY SEQRES 27 A 668 ARG THR TYR VAL VAL VAL ASP PRO THR ALA VAL LYS ILE SEQRES 28 A 668 ARG ALA GLU ASP ARG ARG SER VAL HIS GLY VAL ASP ILE SEQRES 29 A 668 SER PRO PHE ILE ASN ASN LEU PRO PHE GLY LYS THR THR SEQRES 30 A 668 ASN PHE PHE VAL THR ALA ASP ALA SER GLY SER THR SER SEQRES 31 A 668 GLN ALA ALA ASN ILE MET GLU ALA LEU GLU LEU GLY SER SEQRES 32 A 668 GLN LEU LEU LEU LEU ASP GLU ASP THR CYS ALA THR ASN SEQRES 33 A 668 LEU MET TYR ARG ASP ALA LEU MET GLN MET LEU VAL PRO SEQRES 34 A 668 ARG ALA GLN GLU PRO ILE THR PRO PHE VAL GLU ARG VAL SEQRES 35 A 668 ALA ASP LEU SER GLN ASN HIS GLY VAL SER SER ILE MET SEQRES 36 A 668 VAL ILE GLY GLY SER GLY GLN TYR PHE PRO GLN ALA ARG SEQRES 37 A 668 VAL VAL LEU VAL MET ASN ALA TYR GLN ILE SER ASP CYS SEQRES 38 A 668 THR LYS GLU ALA LYS GLU ILE ALA SER ASN SER SER LEU SEQRES 39 A 668 PRO ALA LEU ASN PRO PRO GLY ASP THR ALA SER VAL PHE SEQRES 40 A 668 ILE PRO ASP VAL ASN ARG CYS PHE ASP PRO ASP GLY SER SEQRES 41 A 668 PHE THR THR VAL ARG ARG ARG ARG GLY ARG GLU GLY THR SEQRES 42 A 668 LYS VAL SER GLY ILE GLY THR GLU SER ILE ARG PHE SER SEQRES 43 A 668 GLU GLU THR ILE ASP LEU SER MET VAL GLU GLN ILE VAL SEQRES 44 A 668 GLU GLU GLY GLN VAL ASN ALA ILE ALA GLN CYS LEU ALA SEQRES 45 A 668 LEU LEU TYR ASP GLY GLU PRO ARG ILE VAL PRO GLU MET SEQRES 46 A 668 THR THR LYS GLY GLY ALA LEU THR GLN LEU PRO SER PRO SEQRES 47 A 668 GLY GLY VAL CYS GLU ILE GLN ARG GLY LYS PHE ASN SER SEQRES 48 A 668 ASN PHE SER SER MET ILE ALA GLY CYS CYS SER HIS GLN SEQRES 49 A 668 HIS ASP LYS ARG LEU GLU LEU ARG THR PRO SER CYS TYR SEQRES 50 A 668 LEU PRO ARG GLY PHE THR SER ALA THR ARG HIS ILE GLU SEQRES 51 A 668 ILE GLY ALA ALA LEU ASN ARG LEU ARG THR LEU ARG THR SEQRES 52 A 668 VAL THR ALA LYS ARG HET MG A 701 1 HET MG A 702 1 HET MG A 703 1 HET HG A 704 1 HET HG A 705 1 HET HG A 706 1 HET HG A 707 1 HET HG A 708 1 HET HG A 709 1 HET HG A 710 1 HET HG A 711 1 HET HG A 712 1 HET HG A 713 1 HET HG A 714 1 HET ADP A 715 27 HETNAM MG MAGNESIUM ION HETNAM HG MERCURY (II) ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 MG 3(MG 2+) FORMUL 5 HG 11(HG 2+) FORMUL 16 ADP C10 H15 N5 O10 P2 FORMUL 17 HOH *109(H2 O) HELIX 1 AA1 SER A 52 VAL A 61 1 10 HELIX 2 AA2 ASN A 65 THR A 73 5 9 HELIX 3 AA3 SER A 110 GLN A 116 1 7 HELIX 4 AA4 ASP A 119 ALA A 123 5 5 HELIX 5 AA5 ASN A 124 ASN A 145 1 22 HELIX 6 AA6 ASP A 202 ASN A 212 1 11 HELIX 7 AA7 GLU A 213 VAL A 222 1 10 HELIX 8 AA8 ASN A 226 SER A 245 1 20 HELIX 9 AA9 PRO A 283 SER A 285 5 3 HELIX 10 AB1 GLY A 318 VAL A 328 1 11 HELIX 11 AB2 GLY A 329 TYR A 331 5 3 HELIX 12 AB3 SER A 386 GLY A 402 1 17 HELIX 13 AB4 ASP A 411 CYS A 413 5 3 HELIX 14 AB5 ALA A 414 TYR A 419 1 6 HELIX 15 AB6 ASP A 421 VAL A 428 1 8 HELIX 16 AB7 PRO A 429 GLU A 433 5 5 HELIX 17 AB8 PRO A 437 GLU A 440 5 4 HELIX 18 AB9 ARG A 441 GLY A 450 1 10 HELIX 19 AC1 CYS A 481 ASN A 491 1 11 HELIX 20 AC2 ASP A 516 THR A 522 1 7 HELIX 21 AC3 GLU A 560 GLY A 577 1 18 HELIX 22 AC4 GLY A 577 LEU A 592 1 16 HELIX 23 AC5 SER A 611 LYS A 627 1 17 HELIX 24 AC6 ARG A 647 ASN A 656 1 10 SHEET 1 AA1 5 THR A 76 GLN A 78 0 SHEET 2 AA1 5 ARG A 84 PHE A 87 -1 O CYS A 85 N TYR A 77 SHEET 3 AA1 5 SER A 99 CYS A 105 -1 O ARG A 102 N THR A 86 SHEET 4 AA1 5 ILE A 186 VAL A 192 -1 O ILE A 186 N CYS A 105 SHEET 5 AA1 5 VAL A 155 GLN A 156 -1 N GLN A 156 O ARG A 191 SHEET 1 AA2 5 THR A 76 GLN A 78 0 SHEET 2 AA2 5 ARG A 84 PHE A 87 -1 O CYS A 85 N TYR A 77 SHEET 3 AA2 5 SER A 99 CYS A 105 -1 O ARG A 102 N THR A 86 SHEET 4 AA2 5 ILE A 186 VAL A 192 -1 O ILE A 186 N CYS A 105 SHEET 5 AA2 5 VAL A 170 LEU A 172 -1 N GLY A 171 O GLU A 187 SHEET 1 AA3 2 HIS A 163 VAL A 164 0 SHEET 2 AA3 2 ASN A 332 HIS A 333 -1 O ASN A 332 N VAL A 164 SHEET 1 AA4 4 GLU A 287 THR A 291 0 SHEET 2 AA4 4 THR A 298 LEU A 304 -1 O GLY A 301 N CYS A 288 SHEET 3 AA4 4 ALA A 254 ALA A 257 -1 N ALA A 254 O LEU A 304 SHEET 4 AA4 4 VAL A 342 VAL A 344 -1 O VAL A 343 N PHE A 255 SHEET 1 AA5 6 VAL A 349 LYS A 350 0 SHEET 2 AA5 6 LEU A 405 ASP A 409 1 O LEU A 405 N VAL A 349 SHEET 3 AA5 6 SER A 452 VAL A 456 1 O SER A 452 N LEU A 406 SHEET 4 AA5 6 LEU A 308 GLY A 313 1 N ILE A 311 O MET A 455 SHEET 5 AA5 6 VAL A 469 ASN A 474 1 O LEU A 471 N ALA A 312 SHEET 6 AA5 6 GLN A 477 ASP A 480 -1 O SER A 479 N VAL A 472 SHEET 1 AA6 2 VAL A 359 VAL A 362 0 SHEET 2 AA6 2 PHE A 380 THR A 382 -1 O THR A 382 N VAL A 359 SHEET 1 AA7 2 CYS A 514 PHE A 515 0 SHEET 2 AA7 2 THR A 663 VAL A 664 -1 O VAL A 664 N CYS A 514 SHEET 1 AA8 3 VAL A 535 ILE A 538 0 SHEET 2 AA8 3 SER A 542 PHE A 545 -1 O SER A 542 N ILE A 538 SHEET 3 AA8 3 GLU A 548 ASP A 551 -1 O ILE A 550 N ILE A 543 LINK SG CYS A 105 HG HG A 713 1555 1555 2.83 LINK O PHE A 109 HG HG A 705 1555 1555 2.51 LINK SG CYS A 126 HG HG A 706 1555 1555 2.35 LINK SG CYS A 236 HG HG A 714 1555 1555 2.42 LINK SG CYS A 413 HG HG A 707 1555 1555 2.70 LINK SG CYS A 481 HG HG A 708 1555 1555 2.48 LINK O PHE A 515 HG HG A 709 1555 1555 3.10 LINK O CYS A 620 MG MG A 702 1555 1555 2.23 LINK O CYS A 621 HG HG A 710 1555 1555 3.07 LINK SG CYS A 621 HG HG A 710 1555 1555 2.39 LINK SG CYS A 636 HG HG A 711 1555 1555 2.33 LINK HG HG A 708 O HOH A 903 1555 1555 2.30 LINK HG HG A 708 O HOH A 909 1555 1555 2.43 LINK HG HG A 710 O HOH A 907 1555 1555 3.14 LINK HG HG A 711 O HOH A 904 1555 1555 2.63 SITE 1 AC1 4 SER A 320 ASP A 409 ASP A 411 VAL A 456 SITE 1 AC2 2 CYS A 570 CYS A 620 SITE 1 AC3 2 CYS A 570 CYS A 620 SITE 1 AC4 2 TYR A 252 CYS A 288 SITE 1 AC5 2 CYS A 107 PHE A 109 SITE 1 AC6 4 CYS A 126 HIS A 238 GLU A 241 VAL A 601 SITE 1 AC7 3 GLU A 410 CYS A 413 MET A 418 SITE 1 AC8 5 ASP A 480 CYS A 481 GLU A 484 HOH A 903 SITE 2 AC8 5 HOH A 909 SITE 1 AC9 3 CYS A 514 PHE A 515 VAL A 664 SITE 1 AD1 2 CYS A 621 THR A 646 SITE 1 AD2 4 GLN A 569 LEU A 631 CYS A 636 HOH A 904 SITE 1 AD3 1 CYS A 221 SITE 1 AD4 3 CYS A 105 ILE A 186 LEU A 218 SITE 1 AD5 2 CYS A 236 TYR A 341 SITE 1 AD6 15 PRO A 263 VAL A 278 GLY A 314 PHE A 316 SITE 2 AD6 15 HIS A 317 GLY A 318 LYS A 319 SER A 320 SITE 3 AD6 15 THR A 321 ASP A 384 SER A 386 TYR A 476 SITE 4 AD6 15 HOH A 844 HOH A 846 HOH A 854 CRYST1 105.584 184.709 73.639 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009471 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013580 0.00000