data_4YJ0 # _entry.id 4YJ0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.357 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4YJ0 pdb_00004yj0 10.2210/pdb4yj0/pdb WWPDB D_1000207548 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4YJ0 _pdbx_database_status.recvd_initial_deposition_date 2015-03-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Murphy, M.W.' 1 'Lee, J.K.' 2 'Rojo, S.' 3 'Gearhart, M.D.' 4 'Kurahashi, K.' 5 'Banerjee, S.' 6 'Loeuille, G.' 7 'Bashamboo, A.' 8 'McElreavey, K.' 9 'Zarkower, D.' 10 'Aihara, H.' 11 'Bardwell, V.J.' 12 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1545-9985 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 22 _citation.language ? _citation.page_first 442 _citation.page_last 451 _citation.title 'An ancient protein-DNA interaction underlying metazoan sex determination.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nsmb.3032 _citation.pdbx_database_id_PubMed 26005864 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Murphy, M.W.' 1 ? primary 'Lee, J.K.' 2 ? primary 'Rojo, S.' 3 ? primary 'Gearhart, M.D.' 4 ? primary 'Kurahashi, K.' 5 ? primary 'Banerjee, S.' 6 ? primary 'Loeuille, G.A.' 7 ? primary 'Bashamboo, A.' 8 ? primary 'McElreavey, K.' 9 ? primary 'Zarkower, D.' 10 ? primary 'Aihara, H.' 11 ? primary 'Bardwell, V.J.' 12 ? # _cell.entry_id 4YJ0 _cell.length_a 83.185 _cell.length_b 138.926 _cell.length_c 141.574 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YJ0 _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Doublesex- and mab-3-related transcription factor 1' 8153.620 3 ? ? 'residues 70-131' SPRLPKCARCRNHGYASPLKGHKRFCMWRDCQCKKCNLIAERQRVMAAQVALRRQQAQEEEL 2 polymer syn 'DNA (25-MER)' 7703.981 1 ? ? ? ? 3 polymer syn 'DNA (25-MER)' 7650.975 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 6 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DM domain expressed in testis protein 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no SKKSPRLPKCARCRNHGYASPLKGHKRFCMWRDCQCKKCNLIAERQRVMAAQVALRRQQAQEEELGISHP SKKSPRLPKCARCRNHGYASPLKGHKRFCMWRDCQCKKCNLIAERQRVMAAQVALRRQQAQEEELGISHP A,B,C ? 2 polydeoxyribonucleotide no no ;(DC)(DG)(DA)(DG)(DA)(DT)(DT)(DT)(DG)(DA)(DT)(DA)(DC)(DA)(DT)(DT)(DG)(DT)(DT)(DG) (DC)(DT)(DC)(DG)(DA) ; CGAGATTTGATACATTGTTGCTCGA D ? 3 polydeoxyribonucleotide no no ;(DT)(DC)(DG)(DA)(DG)(DC)(DA)(DA)(DC)(DA)(DA)(DT)(DG)(DT)(DA)(DT)(DC)(DA)(DA)(DA) (DT)(DC)(DT)(DC)(DG) ; TCGAGCAACAATGTATCAAATCTCG E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 LYS n 1 3 LYS n 1 4 SER n 1 5 PRO n 1 6 ARG n 1 7 LEU n 1 8 PRO n 1 9 LYS n 1 10 CYS n 1 11 ALA n 1 12 ARG n 1 13 CYS n 1 14 ARG n 1 15 ASN n 1 16 HIS n 1 17 GLY n 1 18 TYR n 1 19 ALA n 1 20 SER n 1 21 PRO n 1 22 LEU n 1 23 LYS n 1 24 GLY n 1 25 HIS n 1 26 LYS n 1 27 ARG n 1 28 PHE n 1 29 CYS n 1 30 MET n 1 31 TRP n 1 32 ARG n 1 33 ASP n 1 34 CYS n 1 35 GLN n 1 36 CYS n 1 37 LYS n 1 38 LYS n 1 39 CYS n 1 40 ASN n 1 41 LEU n 1 42 ILE n 1 43 ALA n 1 44 GLU n 1 45 ARG n 1 46 GLN n 1 47 ARG n 1 48 VAL n 1 49 MET n 1 50 ALA n 1 51 ALA n 1 52 GLN n 1 53 VAL n 1 54 ALA n 1 55 LEU n 1 56 ARG n 1 57 ARG n 1 58 GLN n 1 59 GLN n 1 60 ALA n 1 61 GLN n 1 62 GLU n 1 63 GLU n 1 64 GLU n 1 65 LEU n 1 66 GLY n 1 67 ILE n 1 68 SER n 1 69 HIS n 1 70 PRO n 2 1 DC n 2 2 DG n 2 3 DA n 2 4 DG n 2 5 DA n 2 6 DT n 2 7 DT n 2 8 DT n 2 9 DG n 2 10 DA n 2 11 DT n 2 12 DA n 2 13 DC n 2 14 DA n 2 15 DT n 2 16 DT n 2 17 DG n 2 18 DT n 2 19 DT n 2 20 DG n 2 21 DC n 2 22 DT n 2 23 DC n 2 24 DG n 2 25 DA n 3 1 DT n 3 2 DC n 3 3 DG n 3 4 DA n 3 5 DG n 3 6 DC n 3 7 DA n 3 8 DA n 3 9 DC n 3 10 DA n 3 11 DA n 3 12 DT n 3 13 DG n 3 14 DT n 3 15 DA n 3 16 DT n 3 17 DC n 3 18 DA n 3 19 DA n 3 20 DA n 3 21 DT n 3 22 DC n 3 23 DT n 3 24 DC n 3 25 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 70 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'DMRT1, DMT1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name peSUMOPRO _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 25 'Homo sapiens' Human 9606 ? 3 1 sample 1 25 'Homo sapiens' Human 9606 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP DMRT1_HUMAN Q9Y5R6 ? 1 SPRLPKCARCRNHGYASPLKGHKRFCMWRDCQCKKCNLIAERQRVMAAQVALRRQQAQEEEL 70 2 PDB 4YJ0 4YJ0 ? 2 ? 1 3 PDB 4YJ0 4YJ0 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4YJ0 A 4 ? 65 ? Q9Y5R6 70 ? 131 ? 70 131 2 1 4YJ0 B 4 ? 65 ? Q9Y5R6 70 ? 131 ? 70 131 3 1 4YJ0 C 4 ? 65 ? Q9Y5R6 70 ? 131 ? 70 131 4 2 4YJ0 D 1 ? 25 ? 4YJ0 1 ? 25 ? 1 25 5 3 4YJ0 E 1 ? 25 ? 4YJ0 1 ? 25 ? 1 25 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4YJ0 SER A 1 ? UNP Q9Y5R6 ? ? 'expression tag' 67 1 1 4YJ0 LYS A 2 ? UNP Q9Y5R6 ? ? 'expression tag' 68 2 1 4YJ0 LYS A 3 ? UNP Q9Y5R6 ? ? 'expression tag' 69 3 1 4YJ0 GLY A 66 ? UNP Q9Y5R6 ? ? 'expression tag' 132 4 1 4YJ0 ILE A 67 ? UNP Q9Y5R6 ? ? 'expression tag' 133 5 1 4YJ0 SER A 68 ? UNP Q9Y5R6 ? ? 'expression tag' 134 6 1 4YJ0 HIS A 69 ? UNP Q9Y5R6 ? ? 'expression tag' 135 7 1 4YJ0 PRO A 70 ? UNP Q9Y5R6 ? ? 'expression tag' 136 8 2 4YJ0 SER B 1 ? UNP Q9Y5R6 ? ? 'expression tag' 67 9 2 4YJ0 LYS B 2 ? UNP Q9Y5R6 ? ? 'expression tag' 68 10 2 4YJ0 LYS B 3 ? UNP Q9Y5R6 ? ? 'expression tag' 69 11 2 4YJ0 GLY B 66 ? UNP Q9Y5R6 ? ? 'expression tag' 132 12 2 4YJ0 ILE B 67 ? UNP Q9Y5R6 ? ? 'expression tag' 133 13 2 4YJ0 SER B 68 ? UNP Q9Y5R6 ? ? 'expression tag' 134 14 2 4YJ0 HIS B 69 ? UNP Q9Y5R6 ? ? 'expression tag' 135 15 2 4YJ0 PRO B 70 ? UNP Q9Y5R6 ? ? 'expression tag' 136 16 3 4YJ0 SER C 1 ? UNP Q9Y5R6 ? ? 'expression tag' 67 17 3 4YJ0 LYS C 2 ? UNP Q9Y5R6 ? ? 'expression tag' 68 18 3 4YJ0 LYS C 3 ? UNP Q9Y5R6 ? ? 'expression tag' 69 19 3 4YJ0 GLY C 66 ? UNP Q9Y5R6 ? ? 'expression tag' 132 20 3 4YJ0 ILE C 67 ? UNP Q9Y5R6 ? ? 'expression tag' 133 21 3 4YJ0 SER C 68 ? UNP Q9Y5R6 ? ? 'expression tag' 134 22 3 4YJ0 HIS C 69 ? UNP Q9Y5R6 ? ? 'expression tag' 135 23 3 4YJ0 PRO C 70 ? UNP Q9Y5R6 ? ? 'expression tag' 136 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4YJ0 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 5.14 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 76.05 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M BitsTris pH 7.5, 10% MPD, 7-11% PEG 3350, 10uM zinc chloride' _exptl_crystal_grow.pdbx_pH_range 6.5 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2011-08-13 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'SI 111' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.23 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.23 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 128.700 _reflns.entry_id 4YJ0 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.814 _reflns.d_resolution_low 49.897 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all 8170 _reflns.number_obs 8170 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 2 _reflns.percent_possible_obs 98.59 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.3 _reflns.pdbx_Rmerge_I_obs 0.108 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.108 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 3.81 _reflns_shell.d_res_low 4.05 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 94 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs .94 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.5 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4YJ0 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 8170 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.87 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.731 _refine.ls_d_res_high 3.814 _refine.ls_percent_reflns_obs 98.59 _refine.ls_R_factor_obs 0.2323 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2289 _refine.ls_R_factor_R_free 0.2624 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.90 _refine.ls_number_reflns_R_free 809 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'Random selection' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.44 _refine.pdbx_overall_phase_error 31.86 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1509 _refine_hist.pdbx_number_atoms_nucleic_acid 1019 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2534 _refine_hist.d_res_high 3.814 _refine_hist.d_res_low 34.731 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.004 ? ? 2675 'X-RAY DIFFRACTION' ? f_angle_d 0.895 ? ? 3803 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 25.289 ? ? 1111 'X-RAY DIFFRACTION' ? f_chiral_restr 0.032 ? ? 403 'X-RAY DIFFRACTION' ? f_plane_restr 0.021 ? ? 348 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 3.8137 4.0523 1135 0.3560 94.00 0.3936 . . 124 . . . . 'X-RAY DIFFRACTION' . 4.0523 4.3647 1224 0.3033 100.00 0.3278 . . 134 . . . . 'X-RAY DIFFRACTION' . 4.3647 4.8029 1223 0.2676 100.00 0.2898 . . 135 . . . . 'X-RAY DIFFRACTION' . 4.8029 5.4955 1250 0.2611 100.00 0.2924 . . 136 . . . . 'X-RAY DIFFRACTION' . 5.4955 6.9148 1247 0.2351 100.00 0.2882 . . 141 . . . . 'X-RAY DIFFRACTION' . 6.9148 34.7329 1282 0.1592 97.00 0.1885 . . 139 . . . . # _struct.entry_id 4YJ0 _struct.title 'Crystal structure of the DM domain of human DMRT1 bound to 25mer target DNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4YJ0 _struct_keywords.text 'Transcription factor, Protein-DNA Complex, double Zn-finger, transcription' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 CYS A 10 ? ASN A 15 ? CYS A 76 ASN A 81 1 ? 6 HELX_P HELX_P2 AA2 CYS A 39 ? GLU A 63 ? CYS A 105 GLU A 129 1 ? 25 HELX_P HELX_P3 AA3 CYS B 10 ? GLY B 17 ? CYS B 76 GLY B 83 1 ? 8 HELX_P HELX_P4 AA4 GLY B 24 ? CYS B 29 ? GLY B 90 CYS B 95 1 ? 6 HELX_P HELX_P5 AA5 CYS B 36 ? GLU B 63 ? CYS B 102 GLU B 129 1 ? 28 HELX_P HELX_P6 AA6 CYS C 10 ? GLY C 17 ? CYS C 76 GLY C 83 1 ? 8 HELX_P HELX_P7 AA7 GLY C 24 ? CYS C 29 ? GLY C 90 CYS C 95 1 ? 6 HELX_P HELX_P8 AA8 CYS C 36 ? GLU C 63 ? CYS C 102 GLU C 129 1 ? 28 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 10 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 76 A ZN 202 1_555 ? ? ? ? ? ? ? 2.748 ? ? metalc2 metalc ? ? A CYS 13 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 79 A ZN 202 1_555 ? ? ? ? ? ? ? 2.442 ? ? metalc3 metalc ? ? A HIS 16 NE2 ? ? ? 1_555 F ZN . ZN ? ? A HIS 82 A ZN 201 1_555 ? ? ? ? ? ? ? 2.390 ? ? metalc4 metalc ? ? A CYS 29 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 95 A ZN 202 1_555 ? ? ? ? ? ? ? 2.454 ? ? metalc5 metalc ? ? A CYS 36 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 102 A ZN 201 1_555 ? ? ? ? ? ? ? 2.439 ? ? metalc6 metalc ? ? A CYS 39 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 105 A ZN 201 1_555 ? ? ? ? ? ? ? 2.929 ? ? metalc7 metalc ? ? B CYS 10 SG ? ? ? 1_555 I ZN . ZN ? ? B CYS 76 B ZN 202 1_555 ? ? ? ? ? ? ? 2.538 ? ? metalc8 metalc ? ? B CYS 13 SG ? ? ? 1_555 I ZN . ZN ? ? B CYS 79 B ZN 202 1_555 ? ? ? ? ? ? ? 2.397 ? ? metalc9 metalc ? ? B HIS 16 NE2 ? ? ? 1_555 H ZN . ZN ? ? B HIS 82 B ZN 201 1_555 ? ? ? ? ? ? ? 2.302 ? ? metalc10 metalc ? ? B HIS 25 NE2 ? ? ? 1_555 I ZN . ZN ? ? B HIS 91 B ZN 202 1_555 ? ? ? ? ? ? ? 2.518 ? ? metalc11 metalc ? ? B CYS 29 SG ? ? ? 1_555 I ZN . ZN ? ? B CYS 95 B ZN 202 1_555 ? ? ? ? ? ? ? 2.557 ? ? metalc12 metalc ? ? B CYS 34 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 100 B ZN 201 1_555 ? ? ? ? ? ? ? 2.348 ? ? metalc13 metalc ? ? B CYS 36 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 102 B ZN 201 1_555 ? ? ? ? ? ? ? 2.774 ? ? metalc14 metalc ? ? B CYS 39 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 105 B ZN 201 1_555 ? ? ? ? ? ? ? 2.442 ? ? metalc15 metalc ? ? C CYS 10 SG ? ? ? 1_555 K ZN . ZN ? ? C CYS 76 C ZN 202 1_555 ? ? ? ? ? ? ? 2.440 ? ? metalc16 metalc ? ? C CYS 13 SG ? ? ? 1_555 K ZN . ZN ? ? C CYS 79 C ZN 202 1_555 ? ? ? ? ? ? ? 2.429 ? ? metalc17 metalc ? ? C HIS 16 NE2 ? ? ? 1_555 J ZN . ZN ? ? C HIS 82 C ZN 201 1_555 ? ? ? ? ? ? ? 1.958 ? ? metalc18 metalc ? ? C HIS 25 NE2 ? ? ? 1_555 K ZN . ZN ? ? C HIS 91 C ZN 202 1_555 ? ? ? ? ? ? ? 2.570 ? ? metalc19 metalc ? ? C CYS 29 SG ? ? ? 1_555 K ZN . ZN ? ? C CYS 95 C ZN 202 1_555 ? ? ? ? ? ? ? 2.566 ? ? metalc20 metalc ? ? C CYS 34 SG ? ? ? 1_555 J ZN . ZN ? ? C CYS 100 C ZN 201 1_555 ? ? ? ? ? ? ? 1.941 ? ? metalc21 metalc ? ? C CYS 36 SG ? ? ? 1_555 J ZN . ZN ? ? C CYS 102 C ZN 201 1_555 ? ? ? ? ? ? ? 1.959 ? ? metalc22 metalc ? ? C CYS 39 SG ? ? ? 1_555 J ZN . ZN ? ? C CYS 105 C ZN 201 1_555 ? ? ? ? ? ? ? 2.360 ? ? hydrog1 hydrog ? ? D DC 1 N3 ? ? ? 1_555 E DG 25 N1 ? ? D DC 1 E DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? D DC 1 N4 ? ? ? 1_555 E DG 25 O6 ? ? D DC 1 E DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? D DC 1 O2 ? ? ? 1_555 E DG 25 N2 ? ? D DC 1 E DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? D DG 2 N1 ? ? ? 1_555 E DC 24 N3 ? ? D DG 2 E DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? D DG 2 N2 ? ? ? 1_555 E DC 24 O2 ? ? D DG 2 E DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? D DG 2 O6 ? ? ? 1_555 E DC 24 N4 ? ? D DG 2 E DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? D DA 3 N1 ? ? ? 1_555 E DT 23 N3 ? ? D DA 3 E DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? D DA 3 N6 ? ? ? 1_555 E DT 23 O4 ? ? D DA 3 E DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? D DG 4 N1 ? ? ? 1_555 E DC 22 N3 ? ? D DG 4 E DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? D DG 4 N2 ? ? ? 1_555 E DC 22 O2 ? ? D DG 4 E DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? D DG 4 O6 ? ? ? 1_555 E DC 22 N4 ? ? D DG 4 E DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? D DA 5 N1 ? ? ? 1_555 E DT 21 N3 ? ? D DA 5 E DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? D DA 5 N6 ? ? ? 1_555 E DT 21 O4 ? ? D DA 5 E DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? D DT 6 N3 ? ? ? 1_555 E DA 20 N1 ? ? D DT 6 E DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? D DT 6 O4 ? ? ? 1_555 E DA 20 N6 ? ? D DT 6 E DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? D DT 7 N3 ? ? ? 1_555 E DA 19 N1 ? ? D DT 7 E DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? D DT 7 O4 ? ? ? 1_555 E DA 19 N6 ? ? D DT 7 E DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? D DT 8 N3 ? ? ? 1_555 E DA 18 N1 ? ? D DT 8 E DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? D DT 8 O4 ? ? ? 1_555 E DA 18 N6 ? ? D DT 8 E DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? D DG 9 N1 ? ? ? 1_555 E DC 17 N3 ? ? D DG 9 E DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? D DG 9 N2 ? ? ? 1_555 E DC 17 O2 ? ? D DG 9 E DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? D DG 9 O6 ? ? ? 1_555 E DC 17 N4 ? ? D DG 9 E DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? D DA 10 N1 ? ? ? 1_555 E DT 16 N3 ? ? D DA 10 E DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? D DA 10 N6 ? ? ? 1_555 E DT 16 O4 ? ? D DA 10 E DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? D DT 11 N3 ? ? ? 1_555 E DA 15 N1 ? ? D DT 11 E DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? D DT 11 O4 ? ? ? 1_555 E DA 15 N6 ? ? D DT 11 E DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? D DA 12 N1 ? ? ? 1_555 E DT 14 N3 ? ? D DA 12 E DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? D DA 12 N6 ? ? ? 1_555 E DT 14 O4 ? ? D DA 12 E DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? D DC 13 N3 ? ? ? 1_555 E DG 13 N1 ? ? D DC 13 E DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? D DC 13 N4 ? ? ? 1_555 E DG 13 O6 ? ? D DC 13 E DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? D DC 13 O2 ? ? ? 1_555 E DG 13 N2 ? ? D DC 13 E DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? D DA 14 N1 ? ? ? 1_555 E DT 12 N3 ? ? D DA 14 E DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? D DA 14 N6 ? ? ? 1_555 E DT 12 O4 ? ? D DA 14 E DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? D DT 15 N3 ? ? ? 1_555 E DA 11 N1 ? ? D DT 15 E DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? D DT 15 O4 ? ? ? 1_555 E DA 11 N6 ? ? D DT 15 E DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? D DT 16 N3 ? ? ? 1_555 E DA 10 N1 ? ? D DT 16 E DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? D DT 16 O4 ? ? ? 1_555 E DA 10 N6 ? ? D DT 16 E DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? D DG 17 N1 ? ? ? 1_555 E DC 9 N3 ? ? D DG 17 E DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? D DG 17 N2 ? ? ? 1_555 E DC 9 O2 ? ? D DG 17 E DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? D DG 17 O6 ? ? ? 1_555 E DC 9 N4 ? ? D DG 17 E DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? D DT 18 N3 ? ? ? 1_555 E DA 8 N1 ? ? D DT 18 E DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? D DT 18 O4 ? ? ? 1_555 E DA 8 N6 ? ? D DT 18 E DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? D DT 19 N3 ? ? ? 1_555 E DA 7 N1 ? ? D DT 19 E DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? D DT 19 O4 ? ? ? 1_555 E DA 7 N6 ? ? D DT 19 E DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? D DG 20 N1 ? ? ? 1_555 E DC 6 N3 ? ? D DG 20 E DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? D DG 20 N2 ? ? ? 1_555 E DC 6 O2 ? ? D DG 20 E DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? D DG 20 O6 ? ? ? 1_555 E DC 6 N4 ? ? D DG 20 E DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? D DC 21 N3 ? ? ? 1_555 E DG 5 N1 ? ? D DC 21 E DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? D DC 21 N4 ? ? ? 1_555 E DG 5 O6 ? ? D DC 21 E DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? D DC 21 O2 ? ? ? 1_555 E DG 5 N2 ? ? D DC 21 E DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? D DT 22 N3 ? ? ? 1_555 E DA 4 N1 ? ? D DT 22 E DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? D DT 22 O4 ? ? ? 1_555 E DA 4 N6 ? ? D DT 22 E DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? D DC 23 N3 ? ? ? 1_555 E DG 3 N1 ? ? D DC 23 E DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? D DC 23 N4 ? ? ? 1_555 E DG 3 O6 ? ? D DC 23 E DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? D DC 23 O2 ? ? ? 1_555 E DG 3 N2 ? ? D DC 23 E DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? D DG 24 N1 ? ? ? 1_555 E DC 2 N3 ? ? D DG 24 E DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? D DG 24 N2 ? ? ? 1_555 E DC 2 O2 ? ? D DG 24 E DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? D DG 24 O6 ? ? ? 1_555 E DC 2 N4 ? ? D DG 24 E DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? D DA 25 N1 ? ? ? 1_555 E DT 1 N3 ? ? D DA 25 E DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? D DA 25 N6 ? ? ? 1_555 E DT 1 O4 ? ? D DA 25 E DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 8 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 74 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 LYS _struct_mon_prot_cis.pdbx_label_seq_id_2 9 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 LYS _struct_mon_prot_cis.pdbx_auth_seq_id_2 75 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 14.26 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 201 ? 4 'binding site for residue ZN A 201' AC2 Software A ZN 202 ? 4 'binding site for residue ZN A 202' AC3 Software B ZN 201 ? 4 'binding site for residue ZN B 201' AC4 Software B ZN 202 ? 4 'binding site for residue ZN B 202' AC5 Software C ZN 201 ? 4 'binding site for residue ZN C 201' AC6 Software C ZN 202 ? 4 'binding site for residue ZN C 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 16 ? HIS A 82 . ? 1_555 ? 2 AC1 4 CYS A 34 ? CYS A 100 . ? 1_555 ? 3 AC1 4 CYS A 36 ? CYS A 102 . ? 1_555 ? 4 AC1 4 CYS A 39 ? CYS A 105 . ? 1_555 ? 5 AC2 4 CYS A 10 ? CYS A 76 . ? 1_555 ? 6 AC2 4 CYS A 13 ? CYS A 79 . ? 1_555 ? 7 AC2 4 HIS A 25 ? HIS A 91 . ? 1_555 ? 8 AC2 4 CYS A 29 ? CYS A 95 . ? 1_555 ? 9 AC3 4 HIS B 16 ? HIS B 82 . ? 1_555 ? 10 AC3 4 CYS B 34 ? CYS B 100 . ? 1_555 ? 11 AC3 4 CYS B 36 ? CYS B 102 . ? 1_555 ? 12 AC3 4 CYS B 39 ? CYS B 105 . ? 1_555 ? 13 AC4 4 CYS B 10 ? CYS B 76 . ? 1_555 ? 14 AC4 4 CYS B 13 ? CYS B 79 . ? 1_555 ? 15 AC4 4 HIS B 25 ? HIS B 91 . ? 1_555 ? 16 AC4 4 CYS B 29 ? CYS B 95 . ? 1_555 ? 17 AC5 4 HIS C 16 ? HIS C 82 . ? 1_555 ? 18 AC5 4 CYS C 34 ? CYS C 100 . ? 1_555 ? 19 AC5 4 CYS C 36 ? CYS C 102 . ? 1_555 ? 20 AC5 4 CYS C 39 ? CYS C 105 . ? 1_555 ? 21 AC6 4 CYS C 10 ? CYS C 76 . ? 1_555 ? 22 AC6 4 CYS C 13 ? CYS C 79 . ? 1_555 ? 23 AC6 4 HIS C 25 ? HIS C 91 . ? 1_555 ? 24 AC6 4 CYS C 29 ? CYS C 95 . ? 1_555 ? # _atom_sites.entry_id 4YJ0 _atom_sites.fract_transf_matrix[1][1] 0.012021 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007198 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007063 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 67 ? ? ? A . n A 1 2 LYS 2 68 ? ? ? A . n A 1 3 LYS 3 69 ? ? ? A . n A 1 4 SER 4 70 70 SER SER A . n A 1 5 PRO 5 71 71 PRO PRO A . n A 1 6 ARG 6 72 72 ARG ARG A . n A 1 7 LEU 7 73 73 LEU LEU A . n A 1 8 PRO 8 74 74 PRO PRO A . n A 1 9 LYS 9 75 75 LYS ALA A . n A 1 10 CYS 10 76 76 CYS CYS A . n A 1 11 ALA 11 77 77 ALA ALA A . n A 1 12 ARG 12 78 78 ARG ARG A . n A 1 13 CYS 13 79 79 CYS CYS A . n A 1 14 ARG 14 80 80 ARG ARG A . n A 1 15 ASN 15 81 81 ASN ASN A . n A 1 16 HIS 16 82 82 HIS HIS A . n A 1 17 GLY 17 83 83 GLY GLY A . n A 1 18 TYR 18 84 84 TYR TYR A . n A 1 19 ALA 19 85 85 ALA ALA A . n A 1 20 SER 20 86 86 SER SER A . n A 1 21 PRO 21 87 87 PRO PRO A . n A 1 22 LEU 22 88 88 LEU LEU A . n A 1 23 LYS 23 89 89 LYS LYS A . n A 1 24 GLY 24 90 90 GLY GLY A . n A 1 25 HIS 25 91 91 HIS HIS A . n A 1 26 LYS 26 92 92 LYS LYS A . n A 1 27 ARG 27 93 93 ARG ARG A . n A 1 28 PHE 28 94 94 PHE PHE A . n A 1 29 CYS 29 95 95 CYS CYS A . n A 1 30 MET 30 96 96 MET MET A . n A 1 31 TRP 31 97 97 TRP TRP A . n A 1 32 ARG 32 98 98 ARG ARG A . n A 1 33 ASP 33 99 99 ASP ASP A . n A 1 34 CYS 34 100 100 CYS CYS A . n A 1 35 GLN 35 101 101 GLN GLN A . n A 1 36 CYS 36 102 102 CYS CYS A . n A 1 37 LYS 37 103 103 LYS LYS A . n A 1 38 LYS 38 104 104 LYS LYS A . n A 1 39 CYS 39 105 105 CYS CYS A . n A 1 40 ASN 40 106 106 ASN ASN A . n A 1 41 LEU 41 107 107 LEU LEU A . n A 1 42 ILE 42 108 108 ILE ILE A . n A 1 43 ALA 43 109 109 ALA ALA A . n A 1 44 GLU 44 110 110 GLU GLU A . n A 1 45 ARG 45 111 111 ARG ARG A . n A 1 46 GLN 46 112 112 GLN GLN A . n A 1 47 ARG 47 113 113 ARG ARG A . n A 1 48 VAL 48 114 114 VAL VAL A . n A 1 49 MET 49 115 115 MET MET A . n A 1 50 ALA 50 116 116 ALA ALA A . n A 1 51 ALA 51 117 117 ALA ALA A . n A 1 52 GLN 52 118 118 GLN GLN A . n A 1 53 VAL 53 119 119 VAL VAL A . n A 1 54 ALA 54 120 120 ALA ALA A . n A 1 55 LEU 55 121 121 LEU LEU A . n A 1 56 ARG 56 122 122 ARG ARG A . n A 1 57 ARG 57 123 123 ARG ARG A . n A 1 58 GLN 58 124 124 GLN GLN A . n A 1 59 GLN 59 125 125 GLN GLN A . n A 1 60 ALA 60 126 126 ALA ALA A . n A 1 61 GLN 61 127 127 GLN GLN A . n A 1 62 GLU 62 128 128 GLU ALA A . n A 1 63 GLU 63 129 129 GLU GLU A . n A 1 64 GLU 64 130 130 GLU GLU A . n A 1 65 LEU 65 131 131 LEU LEU A . n A 1 66 GLY 66 132 ? ? ? A . n A 1 67 ILE 67 133 ? ? ? A . n A 1 68 SER 68 134 ? ? ? A . n A 1 69 HIS 69 135 ? ? ? A . n A 1 70 PRO 70 136 ? ? ? A . n B 1 1 SER 1 67 ? ? ? B . n B 1 2 LYS 2 68 ? ? ? B . n B 1 3 LYS 3 69 69 LYS ALA B . n B 1 4 SER 4 70 70 SER SER B . n B 1 5 PRO 5 71 71 PRO PRO B . n B 1 6 ARG 6 72 72 ARG ARG B . n B 1 7 LEU 7 73 73 LEU LEU B . n B 1 8 PRO 8 74 74 PRO PRO B . n B 1 9 LYS 9 75 75 LYS LYS B . n B 1 10 CYS 10 76 76 CYS CYS B . n B 1 11 ALA 11 77 77 ALA ALA B . n B 1 12 ARG 12 78 78 ARG ARG B . n B 1 13 CYS 13 79 79 CYS CYS B . n B 1 14 ARG 14 80 80 ARG ARG B . n B 1 15 ASN 15 81 81 ASN ASN B . n B 1 16 HIS 16 82 82 HIS HIS B . n B 1 17 GLY 17 83 83 GLY GLY B . n B 1 18 TYR 18 84 84 TYR TYR B . n B 1 19 ALA 19 85 85 ALA ALA B . n B 1 20 SER 20 86 86 SER SER B . n B 1 21 PRO 21 87 87 PRO PRO B . n B 1 22 LEU 22 88 88 LEU LEU B . n B 1 23 LYS 23 89 89 LYS LYS B . n B 1 24 GLY 24 90 90 GLY GLY B . n B 1 25 HIS 25 91 91 HIS HIS B . n B 1 26 LYS 26 92 92 LYS LYS B . n B 1 27 ARG 27 93 93 ARG ARG B . n B 1 28 PHE 28 94 94 PHE PHE B . n B 1 29 CYS 29 95 95 CYS CYS B . n B 1 30 MET 30 96 96 MET MET B . n B 1 31 TRP 31 97 97 TRP TRP B . n B 1 32 ARG 32 98 98 ARG ARG B . n B 1 33 ASP 33 99 99 ASP ASP B . n B 1 34 CYS 34 100 100 CYS CYS B . n B 1 35 GLN 35 101 101 GLN GLN B . n B 1 36 CYS 36 102 102 CYS CYS B . n B 1 37 LYS 37 103 103 LYS LYS B . n B 1 38 LYS 38 104 104 LYS LYS B . n B 1 39 CYS 39 105 105 CYS CYS B . n B 1 40 ASN 40 106 106 ASN ASN B . n B 1 41 LEU 41 107 107 LEU LEU B . n B 1 42 ILE 42 108 108 ILE ILE B . n B 1 43 ALA 43 109 109 ALA ALA B . n B 1 44 GLU 44 110 110 GLU GLU B . n B 1 45 ARG 45 111 111 ARG ARG B . n B 1 46 GLN 46 112 112 GLN GLN B . n B 1 47 ARG 47 113 113 ARG ARG B . n B 1 48 VAL 48 114 114 VAL VAL B . n B 1 49 MET 49 115 115 MET MET B . n B 1 50 ALA 50 116 116 ALA ALA B . n B 1 51 ALA 51 117 117 ALA ALA B . n B 1 52 GLN 52 118 118 GLN GLN B . n B 1 53 VAL 53 119 119 VAL VAL B . n B 1 54 ALA 54 120 120 ALA ALA B . n B 1 55 LEU 55 121 121 LEU LEU B . n B 1 56 ARG 56 122 122 ARG ARG B . n B 1 57 ARG 57 123 123 ARG ARG B . n B 1 58 GLN 58 124 124 GLN GLN B . n B 1 59 GLN 59 125 125 GLN GLN B . n B 1 60 ALA 60 126 126 ALA ALA B . n B 1 61 GLN 61 127 127 GLN GLN B . n B 1 62 GLU 62 128 128 GLU GLU B . n B 1 63 GLU 63 129 129 GLU GLU B . n B 1 64 GLU 64 130 130 GLU GLU B . n B 1 65 LEU 65 131 131 LEU ALA B . n B 1 66 GLY 66 132 ? ? ? B . n B 1 67 ILE 67 133 ? ? ? B . n B 1 68 SER 68 134 ? ? ? B . n B 1 69 HIS 69 135 ? ? ? B . n B 1 70 PRO 70 136 ? ? ? B . n C 1 1 SER 1 67 ? ? ? C . n C 1 2 LYS 2 68 ? ? ? C . n C 1 3 LYS 3 69 69 LYS ALA C . n C 1 4 SER 4 70 70 SER ALA C . n C 1 5 PRO 5 71 71 PRO PRO C . n C 1 6 ARG 6 72 72 ARG ARG C . n C 1 7 LEU 7 73 73 LEU LEU C . n C 1 8 PRO 8 74 74 PRO PRO C . n C 1 9 LYS 9 75 75 LYS LYS C . n C 1 10 CYS 10 76 76 CYS CYS C . n C 1 11 ALA 11 77 77 ALA ALA C . n C 1 12 ARG 12 78 78 ARG ARG C . n C 1 13 CYS 13 79 79 CYS CYS C . n C 1 14 ARG 14 80 80 ARG ARG C . n C 1 15 ASN 15 81 81 ASN ASN C . n C 1 16 HIS 16 82 82 HIS HIS C . n C 1 17 GLY 17 83 83 GLY GLY C . n C 1 18 TYR 18 84 84 TYR TYR C . n C 1 19 ALA 19 85 85 ALA ALA C . n C 1 20 SER 20 86 86 SER SER C . n C 1 21 PRO 21 87 87 PRO PRO C . n C 1 22 LEU 22 88 88 LEU LEU C . n C 1 23 LYS 23 89 89 LYS LYS C . n C 1 24 GLY 24 90 90 GLY GLY C . n C 1 25 HIS 25 91 91 HIS HIS C . n C 1 26 LYS 26 92 92 LYS LYS C . n C 1 27 ARG 27 93 93 ARG ARG C . n C 1 28 PHE 28 94 94 PHE PHE C . n C 1 29 CYS 29 95 95 CYS CYS C . n C 1 30 MET 30 96 96 MET MET C . n C 1 31 TRP 31 97 97 TRP TRP C . n C 1 32 ARG 32 98 98 ARG ARG C . n C 1 33 ASP 33 99 99 ASP ASP C . n C 1 34 CYS 34 100 100 CYS CYS C . n C 1 35 GLN 35 101 101 GLN GLN C . n C 1 36 CYS 36 102 102 CYS CYS C . n C 1 37 LYS 37 103 103 LYS LYS C . n C 1 38 LYS 38 104 104 LYS LYS C . n C 1 39 CYS 39 105 105 CYS CYS C . n C 1 40 ASN 40 106 106 ASN ASN C . n C 1 41 LEU 41 107 107 LEU LEU C . n C 1 42 ILE 42 108 108 ILE ILE C . n C 1 43 ALA 43 109 109 ALA ALA C . n C 1 44 GLU 44 110 110 GLU GLU C . n C 1 45 ARG 45 111 111 ARG ARG C . n C 1 46 GLN 46 112 112 GLN GLN C . n C 1 47 ARG 47 113 113 ARG ARG C . n C 1 48 VAL 48 114 114 VAL VAL C . n C 1 49 MET 49 115 115 MET MET C . n C 1 50 ALA 50 116 116 ALA ALA C . n C 1 51 ALA 51 117 117 ALA ALA C . n C 1 52 GLN 52 118 118 GLN GLN C . n C 1 53 VAL 53 119 119 VAL VAL C . n C 1 54 ALA 54 120 120 ALA ALA C . n C 1 55 LEU 55 121 121 LEU LEU C . n C 1 56 ARG 56 122 122 ARG ARG C . n C 1 57 ARG 57 123 123 ARG ARG C . n C 1 58 GLN 58 124 124 GLN GLN C . n C 1 59 GLN 59 125 125 GLN GLN C . n C 1 60 ALA 60 126 126 ALA ALA C . n C 1 61 GLN 61 127 127 GLN GLN C . n C 1 62 GLU 62 128 128 GLU ALA C . n C 1 63 GLU 63 129 129 GLU GLU C . n C 1 64 GLU 64 130 130 GLU GLU C . n C 1 65 LEU 65 131 131 LEU LEU C . n C 1 66 GLY 66 132 ? ? ? C . n C 1 67 ILE 67 133 ? ? ? C . n C 1 68 SER 68 134 ? ? ? C . n C 1 69 HIS 69 135 ? ? ? C . n C 1 70 PRO 70 136 ? ? ? C . n D 2 1 DC 1 1 1 DC DC D . n D 2 2 DG 2 2 2 DG DG D . n D 2 3 DA 3 3 3 DA DA D . n D 2 4 DG 4 4 4 DG DG D . n D 2 5 DA 5 5 5 DA DA D . n D 2 6 DT 6 6 6 DT DT D . n D 2 7 DT 7 7 7 DT DT D . n D 2 8 DT 8 8 8 DT DT D . n D 2 9 DG 9 9 9 DG DG D . n D 2 10 DA 10 10 10 DA DA D . n D 2 11 DT 11 11 11 DT DT D . n D 2 12 DA 12 12 12 DA DA D . n D 2 13 DC 13 13 13 DC DC D . n D 2 14 DA 14 14 14 DA DA D . n D 2 15 DT 15 15 15 DT DT D . n D 2 16 DT 16 16 16 DT DT D . n D 2 17 DG 17 17 17 DG DG D . n D 2 18 DT 18 18 18 DT DT D . n D 2 19 DT 19 19 19 DT DT D . n D 2 20 DG 20 20 20 DG DG D . n D 2 21 DC 21 21 21 DC DC D . n D 2 22 DT 22 22 22 DT DT D . n D 2 23 DC 23 23 23 DC DC D . n D 2 24 DG 24 24 24 DG DG D . n D 2 25 DA 25 25 25 DA DA D . n E 3 1 DT 1 1 1 DT DT E . n E 3 2 DC 2 2 2 DC DC E . n E 3 3 DG 3 3 3 DG DG E . n E 3 4 DA 4 4 4 DA DA E . n E 3 5 DG 5 5 5 DG DG E . n E 3 6 DC 6 6 6 DC DC E . n E 3 7 DA 7 7 7 DA DA E . n E 3 8 DA 8 8 8 DA DA E . n E 3 9 DC 9 9 9 DC DC E . n E 3 10 DA 10 10 10 DA DA E . n E 3 11 DA 11 11 11 DA DA E . n E 3 12 DT 12 12 12 DT DT E . n E 3 13 DG 13 13 13 DG DG E . n E 3 14 DT 14 14 14 DT DT E . n E 3 15 DA 15 15 15 DA DA E . n E 3 16 DT 16 16 16 DT DT E . n E 3 17 DC 17 17 17 DC DC E . n E 3 18 DA 18 18 18 DA DA E . n E 3 19 DA 19 19 19 DA DA E . n E 3 20 DA 20 20 20 DA DA E . n E 3 21 DT 21 21 21 DT DT E . n E 3 22 DC 22 22 22 DC DC E . n E 3 23 DT 23 23 23 DT DT E . n E 3 24 DC 24 24 24 DC DC E . n E 3 25 DG 25 25 25 DG DG E . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 ZN 1 201 2 ZN ZN A . G 4 ZN 1 202 5 ZN ZN A . H 4 ZN 1 201 4 ZN ZN B . I 4 ZN 1 202 6 ZN ZN B . J 4 ZN 1 201 1 ZN ZN C . K 4 ZN 1 202 3 ZN ZN C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10030 ? 1 MORE -93 ? 1 'SSA (A^2)' 19280 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 10 ? A CYS 76 ? 1_555 ZN ? G ZN . ? A ZN 202 ? 1_555 SG ? A CYS 13 ? A CYS 79 ? 1_555 128.1 ? 2 SG ? A CYS 10 ? A CYS 76 ? 1_555 ZN ? G ZN . ? A ZN 202 ? 1_555 SG ? A CYS 29 ? A CYS 95 ? 1_555 99.7 ? 3 SG ? A CYS 13 ? A CYS 79 ? 1_555 ZN ? G ZN . ? A ZN 202 ? 1_555 SG ? A CYS 29 ? A CYS 95 ? 1_555 116.9 ? 4 NE2 ? A HIS 16 ? A HIS 82 ? 1_555 ZN ? F ZN . ? A ZN 201 ? 1_555 SG ? A CYS 36 ? A CYS 102 ? 1_555 125.3 ? 5 NE2 ? A HIS 16 ? A HIS 82 ? 1_555 ZN ? F ZN . ? A ZN 201 ? 1_555 SG ? A CYS 39 ? A CYS 105 ? 1_555 111.1 ? 6 SG ? A CYS 36 ? A CYS 102 ? 1_555 ZN ? F ZN . ? A ZN 201 ? 1_555 SG ? A CYS 39 ? A CYS 105 ? 1_555 78.1 ? 7 SG ? B CYS 10 ? B CYS 76 ? 1_555 ZN ? I ZN . ? B ZN 202 ? 1_555 SG ? B CYS 13 ? B CYS 79 ? 1_555 96.8 ? 8 SG ? B CYS 10 ? B CYS 76 ? 1_555 ZN ? I ZN . ? B ZN 202 ? 1_555 NE2 ? B HIS 25 ? B HIS 91 ? 1_555 135.0 ? 9 SG ? B CYS 13 ? B CYS 79 ? 1_555 ZN ? I ZN . ? B ZN 202 ? 1_555 NE2 ? B HIS 25 ? B HIS 91 ? 1_555 76.6 ? 10 SG ? B CYS 10 ? B CYS 76 ? 1_555 ZN ? I ZN . ? B ZN 202 ? 1_555 SG ? B CYS 29 ? B CYS 95 ? 1_555 125.9 ? 11 SG ? B CYS 13 ? B CYS 79 ? 1_555 ZN ? I ZN . ? B ZN 202 ? 1_555 SG ? B CYS 29 ? B CYS 95 ? 1_555 91.5 ? 12 NE2 ? B HIS 25 ? B HIS 91 ? 1_555 ZN ? I ZN . ? B ZN 202 ? 1_555 SG ? B CYS 29 ? B CYS 95 ? 1_555 99.0 ? 13 NE2 ? B HIS 16 ? B HIS 82 ? 1_555 ZN ? H ZN . ? B ZN 201 ? 1_555 SG ? B CYS 34 ? B CYS 100 ? 1_555 132.6 ? 14 NE2 ? B HIS 16 ? B HIS 82 ? 1_555 ZN ? H ZN . ? B ZN 201 ? 1_555 SG ? B CYS 36 ? B CYS 102 ? 1_555 88.6 ? 15 SG ? B CYS 34 ? B CYS 100 ? 1_555 ZN ? H ZN . ? B ZN 201 ? 1_555 SG ? B CYS 36 ? B CYS 102 ? 1_555 106.8 ? 16 NE2 ? B HIS 16 ? B HIS 82 ? 1_555 ZN ? H ZN . ? B ZN 201 ? 1_555 SG ? B CYS 39 ? B CYS 105 ? 1_555 91.5 ? 17 SG ? B CYS 34 ? B CYS 100 ? 1_555 ZN ? H ZN . ? B ZN 201 ? 1_555 SG ? B CYS 39 ? B CYS 105 ? 1_555 133.5 ? 18 SG ? B CYS 36 ? B CYS 102 ? 1_555 ZN ? H ZN . ? B ZN 201 ? 1_555 SG ? B CYS 39 ? B CYS 105 ? 1_555 84.6 ? 19 SG ? C CYS 10 ? C CYS 76 ? 1_555 ZN ? K ZN . ? C ZN 202 ? 1_555 SG ? C CYS 13 ? C CYS 79 ? 1_555 116.4 ? 20 SG ? C CYS 10 ? C CYS 76 ? 1_555 ZN ? K ZN . ? C ZN 202 ? 1_555 NE2 ? C HIS 25 ? C HIS 91 ? 1_555 128.0 ? 21 SG ? C CYS 13 ? C CYS 79 ? 1_555 ZN ? K ZN . ? C ZN 202 ? 1_555 NE2 ? C HIS 25 ? C HIS 91 ? 1_555 67.8 ? 22 SG ? C CYS 10 ? C CYS 76 ? 1_555 ZN ? K ZN . ? C ZN 202 ? 1_555 SG ? C CYS 29 ? C CYS 95 ? 1_555 126.7 ? 23 SG ? C CYS 13 ? C CYS 79 ? 1_555 ZN ? K ZN . ? C ZN 202 ? 1_555 SG ? C CYS 29 ? C CYS 95 ? 1_555 95.8 ? 24 NE2 ? C HIS 25 ? C HIS 91 ? 1_555 ZN ? K ZN . ? C ZN 202 ? 1_555 SG ? C CYS 29 ? C CYS 95 ? 1_555 102.6 ? 25 NE2 ? C HIS 16 ? C HIS 82 ? 1_555 ZN ? J ZN . ? C ZN 201 ? 1_555 SG ? C CYS 34 ? C CYS 100 ? 1_555 132.4 ? 26 NE2 ? C HIS 16 ? C HIS 82 ? 1_555 ZN ? J ZN . ? C ZN 201 ? 1_555 SG ? C CYS 36 ? C CYS 102 ? 1_555 100.2 ? 27 SG ? C CYS 34 ? C CYS 100 ? 1_555 ZN ? J ZN . ? C ZN 201 ? 1_555 SG ? C CYS 36 ? C CYS 102 ? 1_555 114.0 ? 28 NE2 ? C HIS 16 ? C HIS 82 ? 1_555 ZN ? J ZN . ? C ZN 201 ? 1_555 SG ? C CYS 39 ? C CYS 105 ? 1_555 75.0 ? 29 SG ? C CYS 34 ? C CYS 100 ? 1_555 ZN ? J ZN . ? C ZN 201 ? 1_555 SG ? C CYS 39 ? C CYS 105 ? 1_555 120.1 ? 30 SG ? C CYS 36 ? C CYS 102 ? 1_555 ZN ? J ZN . ? C ZN 201 ? 1_555 SG ? C CYS 39 ? C CYS 105 ? 1_555 108.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-05-27 2 'Structure model' 1 1 2015-06-03 3 'Structure model' 1 2 2015-06-10 4 'Structure model' 1 3 2019-02-20 5 'Structure model' 1 4 2022-03-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Author supporting evidence' 7 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_data_processing_status 2 4 'Structure model' pdbx_seq_map_depositor_info 3 4 'Structure model' pdbx_validate_close_contact 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_conn_type 6 5 'Structure model' database_2 7 5 'Structure model' pdbx_audit_support # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_pdbx_audit_support.funding_organization' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? dev_1801 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? RESOLVE ? ? ? . 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 CE1 _pdbx_validate_close_contact.auth_asym_id_1 C _pdbx_validate_close_contact.auth_comp_id_1 HIS _pdbx_validate_close_contact.auth_seq_id_1 82 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 SG _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 CYS _pdbx_validate_close_contact.auth_seq_id_2 105 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.99 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 C _pdbx_validate_rmsd_bond.auth_comp_id_1 CYS _pdbx_validate_rmsd_bond.auth_seq_id_1 105 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N _pdbx_validate_rmsd_bond.auth_asym_id_2 C _pdbx_validate_rmsd_bond.auth_comp_id_2 ASN _pdbx_validate_rmsd_bond.auth_seq_id_2 106 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.195 _pdbx_validate_rmsd_bond.bond_target_value 1.336 _pdbx_validate_rmsd_bond.bond_deviation -0.141 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.023 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A LEU 73 ? ? CB A LEU 73 ? ? CG A LEU 73 ? ? 132.12 115.30 16.82 2.30 N 2 1 C C LEU 73 ? ? N C PRO 74 ? ? CA C PRO 74 ? ? 128.59 119.30 9.29 1.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 75 ? ? 65.38 86.00 2 1 ALA A 85 ? ? 59.50 -92.52 3 1 SER A 86 ? ? 59.01 98.57 4 1 MET A 96 ? ? 72.59 -14.71 5 1 ASP A 99 ? ? 54.42 84.66 6 1 LYS B 89 ? ? -133.68 -86.84 7 1 ASP B 99 ? ? -120.44 -90.17 8 1 CYS B 100 ? ? 62.61 149.36 9 1 GLN B 101 ? ? -141.43 29.98 10 1 ARG C 72 ? ? -123.92 -67.66 11 1 LEU C 73 ? ? 58.26 85.88 12 1 LYS C 89 ? ? -132.68 -56.15 13 1 ASP C 99 ? ? -116.54 -88.20 14 1 CYS C 100 ? ? 59.15 -77.32 # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 C C LYS 104 ? ? N C CYS 105 ? ? 1.86 2 1 C C CYS 105 ? ? N C ASN 106 ? ? 1.20 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 75 ? CG ? A LYS 9 CG 2 1 Y 1 A LYS 75 ? CD ? A LYS 9 CD 3 1 Y 1 A LYS 75 ? CE ? A LYS 9 CE 4 1 Y 1 A LYS 75 ? NZ ? A LYS 9 NZ 5 1 Y 1 A GLU 128 ? CG ? A GLU 62 CG 6 1 Y 1 A GLU 128 ? CD ? A GLU 62 CD 7 1 Y 1 A GLU 128 ? OE1 ? A GLU 62 OE1 8 1 Y 1 A GLU 128 ? OE2 ? A GLU 62 OE2 9 1 Y 1 B LYS 69 ? CG ? B LYS 3 CG 10 1 Y 1 B LYS 69 ? CD ? B LYS 3 CD 11 1 Y 1 B LYS 69 ? CE ? B LYS 3 CE 12 1 Y 1 B LYS 69 ? NZ ? B LYS 3 NZ 13 1 Y 1 B LEU 131 ? CG ? B LEU 65 CG 14 1 Y 1 B LEU 131 ? CD1 ? B LEU 65 CD1 15 1 Y 1 B LEU 131 ? CD2 ? B LEU 65 CD2 16 1 Y 1 C LYS 69 ? CG ? C LYS 3 CG 17 1 Y 1 C LYS 69 ? CD ? C LYS 3 CD 18 1 Y 1 C LYS 69 ? CE ? C LYS 3 CE 19 1 Y 1 C LYS 69 ? NZ ? C LYS 3 NZ 20 1 Y 1 C SER 70 ? OG ? C SER 4 OG 21 1 Y 1 C GLU 128 ? CG ? C GLU 62 CG 22 1 Y 1 C GLU 128 ? CD ? C GLU 62 CD 23 1 Y 1 C GLU 128 ? OE1 ? C GLU 62 OE1 24 1 Y 1 C GLU 128 ? OE2 ? C GLU 62 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 67 ? A SER 1 2 1 Y 1 A LYS 68 ? A LYS 2 3 1 Y 1 A LYS 69 ? A LYS 3 4 1 Y 1 A GLY 132 ? A GLY 66 5 1 Y 1 A ILE 133 ? A ILE 67 6 1 Y 1 A SER 134 ? A SER 68 7 1 Y 1 A HIS 135 ? A HIS 69 8 1 Y 1 A PRO 136 ? A PRO 70 9 1 Y 1 B SER 67 ? B SER 1 10 1 Y 1 B LYS 68 ? B LYS 2 11 1 Y 1 B GLY 132 ? B GLY 66 12 1 Y 1 B ILE 133 ? B ILE 67 13 1 Y 1 B SER 134 ? B SER 68 14 1 Y 1 B HIS 135 ? B HIS 69 15 1 Y 1 B PRO 136 ? B PRO 70 16 1 Y 1 C SER 67 ? C SER 1 17 1 Y 1 C LYS 68 ? C LYS 2 18 1 Y 1 C GLY 132 ? C GLY 66 19 1 Y 1 C ILE 133 ? C ILE 67 20 1 Y 1 C SER 134 ? C SER 68 21 1 Y 1 C HIS 135 ? C HIS 69 22 1 Y 1 C PRO 136 ? C PRO 70 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4YJ0 'double helix' 4YJ0 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 D DC 1 1_555 E DG 25 1_555 0.285 -0.147 0.077 -0.067 -3.403 -2.454 1 D_DC1:DG25_E D 1 ? E 25 ? 19 1 1 D DG 2 1_555 E DC 24 1_555 -1.250 -0.537 0.146 2.765 -3.052 -1.635 2 D_DG2:DC24_E D 2 ? E 24 ? 19 1 1 D DA 3 1_555 E DT 23 1_555 -0.621 -0.290 0.024 -0.387 -7.894 -2.519 3 D_DA3:DT23_E D 3 ? E 23 ? 20 1 1 D DG 4 1_555 E DC 22 1_555 -0.429 -0.177 0.084 3.696 -6.332 -0.332 4 D_DG4:DC22_E D 4 ? E 22 ? 19 1 1 D DA 5 1_555 E DT 21 1_555 0.236 -0.037 0.019 -0.933 -8.346 -5.458 5 D_DA5:DT21_E D 5 ? E 21 ? 20 1 1 D DT 6 1_555 E DA 20 1_555 -1.310 -0.237 0.180 -2.835 -3.972 -1.523 6 D_DT6:DA20_E D 6 ? E 20 ? 20 1 1 D DT 7 1_555 E DA 19 1_555 0.528 -0.293 0.025 -1.903 -6.145 -1.493 7 D_DT7:DA19_E D 7 ? E 19 ? 20 1 1 D DT 8 1_555 E DA 18 1_555 -0.355 -0.236 -0.155 -1.201 -5.304 7.623 8 D_DT8:DA18_E D 8 ? E 18 ? 20 1 1 D DG 9 1_555 E DC 17 1_555 0.964 -0.133 0.039 0.053 -3.554 -2.389 9 D_DG9:DC17_E D 9 ? E 17 ? 19 1 1 D DA 10 1_555 E DT 16 1_555 0.534 -0.120 -0.052 -1.850 -1.960 -0.350 10 D_DA10:DT16_E D 10 ? E 16 ? 20 1 1 D DT 11 1_555 E DA 15 1_555 -0.096 -0.102 -0.013 1.336 -0.558 -1.225 11 D_DT11:DA15_E D 11 ? E 15 ? 20 1 1 D DA 12 1_555 E DT 14 1_555 0.801 -0.162 0.139 3.345 -4.032 -0.102 12 D_DA12:DT14_E D 12 ? E 14 ? 20 1 1 D DC 13 1_555 E DG 13 1_555 0.368 -0.148 0.172 2.088 -4.317 -0.320 13 D_DC13:DG13_E D 13 ? E 13 ? 19 1 1 D DA 14 1_555 E DT 12 1_555 0.636 -0.117 -0.089 -1.764 -1.051 -0.436 14 D_DA14:DT12_E D 14 ? E 12 ? 20 1 1 D DT 15 1_555 E DA 11 1_555 -0.672 -0.193 0.105 0.592 -5.662 2.823 15 D_DT15:DA11_E D 15 ? E 11 ? 20 1 1 D DT 16 1_555 E DA 10 1_555 -0.791 -0.183 -0.066 -0.945 -2.178 3.005 16 D_DT16:DA10_E D 16 ? E 10 ? 20 1 1 D DG 17 1_555 E DC 9 1_555 0.143 -0.065 -0.014 -4.315 -2.838 -0.394 17 D_DG17:DC9_E D 17 ? E 9 ? 19 1 1 D DT 18 1_555 E DA 8 1_555 -0.435 -0.147 0.107 -1.265 -7.181 0.304 18 D_DT18:DA8_E D 18 ? E 8 ? 20 1 1 D DT 19 1_555 E DA 7 1_555 -0.494 -0.135 0.008 -0.759 -3.524 1.127 19 D_DT19:DA7_E D 19 ? E 7 ? 20 1 1 D DG 20 1_555 E DC 6 1_555 0.002 -0.078 0.101 -0.426 -3.337 -3.278 20 D_DG20:DC6_E D 20 ? E 6 ? 19 1 1 D DC 21 1_555 E DG 5 1_555 0.520 -0.179 -0.042 0.715 -1.334 -0.322 21 D_DC21:DG5_E D 21 ? E 5 ? 19 1 1 D DT 22 1_555 E DA 4 1_555 0.404 -0.170 0.101 0.311 -14.070 -8.066 22 D_DT22:DA4_E D 22 ? E 4 ? 20 1 1 D DC 23 1_555 E DG 3 1_555 0.260 -0.165 0.177 3.258 -10.585 -2.508 23 D_DC23:DG3_E D 23 ? E 3 ? 19 1 1 D DG 24 1_555 E DC 2 1_555 0.929 -0.119 -0.018 -2.709 -4.348 -1.148 24 D_DG24:DC2_E D 24 ? E 2 ? 19 1 1 D DA 25 1_555 E DT 1 1_555 -0.024 -0.059 0.147 1.235 -4.452 -7.847 25 D_DA25:DT1_E D 25 ? E 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 D DC 1 1_555 E DG 25 1_555 D DG 2 1_555 E DC 24 1_555 0.573 1.058 3.420 6.379 6.633 35.708 0.692 0.038 3.599 10.601 -10.195 36.837 1 DD_DC1DG2:DC24DG25_EE D 1 ? E 25 ? D 2 ? E 24 ? 1 D DG 2 1_555 E DC 24 1_555 D DA 3 1_555 E DT 23 1_555 -1.159 0.192 3.268 -6.829 12.235 38.622 -1.116 0.879 3.327 17.801 9.935 40.994 2 DD_DG2DA3:DT23DC24_EE D 2 ? E 24 ? D 3 ? E 23 ? 1 D DA 3 1_555 E DT 23 1_555 D DG 4 1_555 E DC 22 1_555 0.242 -0.005 3.133 -3.701 -0.226 37.706 0.020 -0.826 3.097 -0.349 5.709 37.881 3 DD_DA3DG4:DC22DT23_EE D 3 ? E 23 ? D 4 ? E 22 ? 1 D DG 4 1_555 E DC 22 1_555 D DA 5 1_555 E DT 21 1_555 -0.606 -0.669 3.186 -1.518 -2.289 40.479 -0.714 0.708 3.238 -3.304 2.191 40.568 4 DD_DG4DA5:DT21DC22_EE D 4 ? E 22 ? D 5 ? E 21 ? 1 D DA 5 1_555 E DT 21 1_555 D DT 6 1_555 E DA 20 1_555 0.245 -0.813 3.307 -0.698 -9.634 28.376 0.523 -0.627 3.388 -18.970 1.374 29.943 5 DD_DA5DT6:DA20DT21_EE D 5 ? E 21 ? D 6 ? E 20 ? 1 D DT 6 1_555 E DA 20 1_555 D DT 7 1_555 E DA 19 1_555 -0.363 -0.875 3.167 2.087 -2.605 42.589 -0.947 0.701 3.192 -3.580 -2.867 42.713 6 DD_DT6DT7:DA19DA20_EE D 6 ? E 20 ? D 7 ? E 19 ? 1 D DT 7 1_555 E DA 19 1_555 D DT 8 1_555 E DA 18 1_555 1.068 -0.073 3.133 7.933 3.778 33.675 -0.697 -0.582 3.266 6.388 -13.413 34.770 7 DD_DT7DT8:DA18DA19_EE D 7 ? E 19 ? D 8 ? E 18 ? 1 D DT 8 1_555 E DA 18 1_555 D DG 9 1_555 E DC 17 1_555 -0.688 0.986 3.381 -4.841 -0.905 44.669 1.376 0.445 3.414 -1.186 6.347 44.926 8 DD_DT8DG9:DC17DA18_EE D 8 ? E 18 ? D 9 ? E 17 ? 1 D DG 9 1_555 E DC 17 1_555 D DA 10 1_555 E DT 16 1_555 0.616 -1.044 3.348 1.988 -3.121 32.889 -1.283 -0.731 3.460 -5.490 -3.497 33.091 9 DD_DG9DA10:DT16DC17_EE D 9 ? E 17 ? D 10 ? E 16 ? 1 D DA 10 1_555 E DT 16 1_555 D DT 11 1_555 E DA 15 1_555 -0.040 -0.743 3.551 0.799 -1.219 28.805 -1.196 0.274 3.576 -2.447 -1.604 28.841 10 DD_DA10DT11:DA15DT16_EE D 10 ? E 16 ? D 11 ? E 15 ? 1 D DT 11 1_555 E DA 15 1_555 D DA 12 1_555 E DT 14 1_555 -0.693 0.483 3.522 -3.620 -7.926 40.799 1.576 0.564 3.420 -11.216 5.122 41.680 11 DD_DT11DA12:DT14DA15_EE D 11 ? E 15 ? D 12 ? E 14 ? 1 D DA 12 1_555 E DT 14 1_555 D DC 13 1_555 E DG 13 1_555 0.244 -1.134 3.292 -1.849 -1.921 34.543 -1.605 -0.698 3.331 -3.229 3.107 34.643 12 DD_DA12DC13:DG13DT14_EE D 12 ? E 14 ? D 13 ? E 13 ? 1 D DC 13 1_555 E DG 13 1_555 D DA 14 1_555 E DT 12 1_555 -0.178 -1.121 3.200 1.740 0.742 33.766 -2.043 0.579 3.162 1.276 -2.992 33.817 13 DD_DC13DA14:DT12DG13_EE D 13 ? E 13 ? D 14 ? E 12 ? 1 D DA 14 1_555 E DT 12 1_555 D DT 15 1_555 E DA 11 1_555 -0.045 -1.480 3.246 -2.642 -7.099 29.195 -1.331 -0.477 3.491 -13.793 5.133 30.141 14 DD_DA14DT15:DA11DT12_EE D 14 ? E 12 ? D 15 ? E 11 ? 1 D DT 15 1_555 E DA 11 1_555 D DT 16 1_555 E DA 10 1_555 0.544 -0.504 3.245 2.791 -8.392 36.372 0.336 -0.475 3.307 -13.205 -4.392 37.396 15 DD_DT15DT16:DA10DA11_EE D 15 ? E 11 ? D 16 ? E 10 ? 1 D DT 16 1_555 E DA 10 1_555 D DG 17 1_555 E DC 9 1_555 -0.414 -1.157 3.393 -0.584 -3.634 35.514 -1.332 0.586 3.497 -5.938 0.955 35.698 16 DD_DT16DG17:DC9DA10_EE D 16 ? E 10 ? D 17 ? E 9 ? 1 D DG 17 1_555 E DC 9 1_555 D DT 18 1_555 E DA 8 1_555 0.165 -0.743 3.148 1.461 0.990 36.479 -1.317 -0.069 3.132 1.580 -2.332 36.521 17 DD_DG17DT18:DA8DC9_EE D 17 ? E 9 ? D 18 ? E 8 ? 1 D DT 18 1_555 E DA 8 1_555 D DT 19 1_555 E DA 7 1_555 0.580 0.627 3.455 6.171 -4.853 40.156 1.461 -0.114 3.408 -6.987 -8.885 40.885 18 DD_DT18DT19:DA7DA8_EE D 18 ? E 8 ? D 19 ? E 7 ? 1 D DT 19 1_555 E DA 7 1_555 D DG 20 1_555 E DC 6 1_555 -0.449 0.422 3.637 -3.547 -4.190 40.768 1.106 0.213 3.603 -5.981 5.063 41.120 19 DD_DT19DG20:DC6DA7_EE D 19 ? E 7 ? D 20 ? E 6 ? 1 D DG 20 1_555 E DC 6 1_555 D DC 21 1_555 E DG 5 1_555 0.958 -0.347 3.394 5.265 0.173 34.885 -0.600 -0.755 3.495 0.287 -8.720 35.268 20 DD_DG20DC21:DG5DC6_EE D 20 ? E 6 ? D 21 ? E 5 ? 1 D DC 21 1_555 E DG 5 1_555 D DT 22 1_555 E DA 4 1_555 -0.878 0.329 3.534 -0.045 -7.103 35.393 1.610 1.410 3.408 -11.539 0.073 36.077 21 DD_DC21DT22:DA4DG5_EE D 21 ? E 5 ? D 22 ? E 4 ? 1 D DT 22 1_555 E DA 4 1_555 D DC 23 1_555 E DG 3 1_555 0.480 0.862 3.647 -0.551 3.801 40.717 0.764 -0.755 3.703 5.448 0.790 40.890 22 DD_DT22DC23:DG3DA4_EE D 22 ? E 4 ? D 23 ? E 3 ? 1 D DC 23 1_555 E DG 3 1_555 D DG 24 1_555 E DC 2 1_555 0.160 2.144 3.598 1.786 -10.178 41.130 4.034 -0.034 3.012 -14.219 -2.495 42.353 23 DD_DC23DG24:DC2DG3_EE D 23 ? E 3 ? D 24 ? E 2 ? 1 D DG 24 1_555 E DC 2 1_555 D DA 25 1_555 E DT 1 1_555 -1.328 1.106 3.418 -9.091 -0.623 33.084 1.983 0.686 3.625 -1.069 15.599 34.282 24 DD_DG24DA25:DT1DC2_EE D 24 ? E 2 ? D 25 ? E 1 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health' 'United States' GM59152 1 'National Institutes of Health' 'United States' GM50399 2 'National Institutes of Health' 'United States' AI087098 3 'National Institutes of Health' 'United States' GM095558 4 'National Institutes of Health/National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIH/NIAMS)' 'United States' 'P41 GM103403' 5 COS France 'Action DSDnet BM1303' 6 'Institut Pasteur' France 'Program Blanc Assistance Publique' 7 # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #