HEADER TRANSCRIPTION 02-MAR-15 4YJ0 TITLE CRYSTAL STRUCTURE OF THE DM DOMAIN OF HUMAN DMRT1 BOUND TO 25MER TITLE 2 TARGET DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOUBLESEX- AND MAB-3-RELATED TRANSCRIPTION FACTOR 1; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 70-131; COMPND 5 SYNONYM: DM DOMAIN EXPRESSED IN TESTIS PROTEIN 1; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: COMPND 8 SPRLPKCARCRNHGYASPLKGHKRFCMWRDCQCKKCNLIAERQRVMAAQVALRRQQAQEEEL; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (25-MER); COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (25-MER); COMPND 15 CHAIN: E; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DMRT1, DMT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PESUMOPRO; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606 KEYWDS TRANSCRIPTION FACTOR, PROTEIN-DNA COMPLEX, DOUBLE ZN-FINGER, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.W.MURPHY,J.K.LEE,S.ROJO,M.D.GEARHART,K.KURAHASHI,S.BANERJEE, AUTHOR 2 G.LOEUILLE,A.BASHAMBOO,K.MCELREAVEY,D.ZARKOWER,H.AIHARA,V.J.BARDWELL REVDAT 5 30-MAR-22 4YJ0 1 REMARK REVDAT 4 20-FEB-19 4YJ0 1 REMARK LINK REVDAT 3 10-JUN-15 4YJ0 1 JRNL REVDAT 2 03-JUN-15 4YJ0 1 JRNL REVDAT 1 27-MAY-15 4YJ0 0 JRNL AUTH M.W.MURPHY,J.K.LEE,S.ROJO,M.D.GEARHART,K.KURAHASHI, JRNL AUTH 2 S.BANERJEE,G.A.LOEUILLE,A.BASHAMBOO,K.MCELREAVEY,D.ZARKOWER, JRNL AUTH 3 H.AIHARA,V.J.BARDWELL JRNL TITL AN ANCIENT PROTEIN-DNA INTERACTION UNDERLYING METAZOAN SEX JRNL TITL 2 DETERMINATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 22 442 2015 JRNL REFN ESSN 1545-9985 JRNL PMID 26005864 JRNL DOI 10.1038/NSMB.3032 REMARK 2 REMARK 2 RESOLUTION. 3.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1801 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 3.870 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 8170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.7329 - 6.9148 0.97 1282 139 0.1592 0.1885 REMARK 3 2 6.9148 - 5.4955 1.00 1247 141 0.2351 0.2882 REMARK 3 3 5.4955 - 4.8029 1.00 1250 136 0.2611 0.2924 REMARK 3 4 4.8029 - 4.3647 1.00 1223 135 0.2676 0.2898 REMARK 3 5 4.3647 - 4.0523 1.00 1224 134 0.3033 0.3278 REMARK 3 6 4.0523 - 3.8137 0.94 1135 124 0.3560 0.3936 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 128.7 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2675 REMARK 3 ANGLE : 0.895 3803 REMARK 3 CHIRALITY : 0.032 403 REMARK 3 PLANARITY : 0.021 348 REMARK 3 DIHEDRAL : 25.289 1111 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YJ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207548. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.23 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8170 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.814 REMARK 200 RESOLUTION RANGE LOW (A) : 49.897 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : 0.10800 REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.94000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BITSTRIS PH 7.5, 10% MPD, 7-11% REMARK 280 PEG 3350, 10UM ZINC CHLORIDE, PH 6.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.59250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.46300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.78700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.59250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.46300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.78700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.59250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.46300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.78700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.59250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.46300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.78700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 67 REMARK 465 LYS A 68 REMARK 465 LYS A 69 REMARK 465 GLY A 132 REMARK 465 ILE A 133 REMARK 465 SER A 134 REMARK 465 HIS A 135 REMARK 465 PRO A 136 REMARK 465 SER B 67 REMARK 465 LYS B 68 REMARK 465 GLY B 132 REMARK 465 ILE B 133 REMARK 465 SER B 134 REMARK 465 HIS B 135 REMARK 465 PRO B 136 REMARK 465 SER C 67 REMARK 465 LYS C 68 REMARK 465 GLY C 132 REMARK 465 ILE C 133 REMARK 465 SER C 134 REMARK 465 HIS C 135 REMARK 465 PRO C 136 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 GLU A 128 CG CD OE1 OE2 REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 LEU B 131 CG CD1 CD2 REMARK 470 LYS C 69 CG CD CE NZ REMARK 470 SER C 70 OG REMARK 470 GLU C 128 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE1 HIS C 82 SG CYS C 105 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS C 105 C ASN C 106 N -0.141 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 73 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 PRO C 74 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 75 86.00 65.38 REMARK 500 ALA A 85 -92.52 59.50 REMARK 500 SER A 86 98.57 59.01 REMARK 500 MET A 96 -14.71 72.59 REMARK 500 ASP A 99 84.66 54.42 REMARK 500 LYS B 89 -86.84 -133.68 REMARK 500 ASP B 99 -90.17 -120.44 REMARK 500 CYS B 100 149.36 62.61 REMARK 500 GLN B 101 29.98 -141.43 REMARK 500 ARG C 72 -67.66 -123.92 REMARK 500 LEU C 73 85.88 58.26 REMARK 500 LYS C 89 -56.15 -132.68 REMARK 500 ASP C 99 -88.20 -116.54 REMARK 500 CYS C 100 -77.32 59.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 76 SG REMARK 620 2 CYS A 79 SG 128.1 REMARK 620 3 CYS A 95 SG 99.7 116.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 82 NE2 REMARK 620 2 CYS A 102 SG 125.3 REMARK 620 3 CYS A 105 SG 111.1 78.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 76 SG REMARK 620 2 CYS B 79 SG 96.8 REMARK 620 3 HIS B 91 NE2 135.0 76.6 REMARK 620 4 CYS B 95 SG 125.9 91.5 99.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 82 NE2 REMARK 620 2 CYS B 100 SG 132.6 REMARK 620 3 CYS B 102 SG 88.6 106.8 REMARK 620 4 CYS B 105 SG 91.5 133.5 84.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 76 SG REMARK 620 2 CYS C 79 SG 116.4 REMARK 620 3 HIS C 91 NE2 128.0 67.8 REMARK 620 4 CYS C 95 SG 126.7 95.8 102.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 82 NE2 REMARK 620 2 CYS C 100 SG 132.4 REMARK 620 3 CYS C 102 SG 100.2 114.0 REMARK 620 4 CYS C 105 SG 75.0 120.1 108.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 202 DBREF 4YJ0 A 70 131 UNP Q9Y5R6 DMRT1_HUMAN 70 131 DBREF 4YJ0 B 70 131 UNP Q9Y5R6 DMRT1_HUMAN 70 131 DBREF 4YJ0 C 70 131 UNP Q9Y5R6 DMRT1_HUMAN 70 131 DBREF 4YJ0 D 1 25 PDB 4YJ0 4YJ0 1 25 DBREF 4YJ0 E 1 25 PDB 4YJ0 4YJ0 1 25 SEQADV 4YJ0 SER A 67 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 LYS A 68 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 LYS A 69 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 GLY A 132 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 ILE A 133 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 SER A 134 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 HIS A 135 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 PRO A 136 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 SER B 67 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 LYS B 68 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 LYS B 69 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 GLY B 132 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 ILE B 133 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 SER B 134 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 HIS B 135 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 PRO B 136 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 SER C 67 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 LYS C 68 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 LYS C 69 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 GLY C 132 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 ILE C 133 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 SER C 134 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 HIS C 135 UNP Q9Y5R6 EXPRESSION TAG SEQADV 4YJ0 PRO C 136 UNP Q9Y5R6 EXPRESSION TAG SEQRES 1 A 70 SER LYS LYS SER PRO ARG LEU PRO LYS CYS ALA ARG CYS SEQRES 2 A 70 ARG ASN HIS GLY TYR ALA SER PRO LEU LYS GLY HIS LYS SEQRES 3 A 70 ARG PHE CYS MET TRP ARG ASP CYS GLN CYS LYS LYS CYS SEQRES 4 A 70 ASN LEU ILE ALA GLU ARG GLN ARG VAL MET ALA ALA GLN SEQRES 5 A 70 VAL ALA LEU ARG ARG GLN GLN ALA GLN GLU GLU GLU LEU SEQRES 6 A 70 GLY ILE SER HIS PRO SEQRES 1 B 70 SER LYS LYS SER PRO ARG LEU PRO LYS CYS ALA ARG CYS SEQRES 2 B 70 ARG ASN HIS GLY TYR ALA SER PRO LEU LYS GLY HIS LYS SEQRES 3 B 70 ARG PHE CYS MET TRP ARG ASP CYS GLN CYS LYS LYS CYS SEQRES 4 B 70 ASN LEU ILE ALA GLU ARG GLN ARG VAL MET ALA ALA GLN SEQRES 5 B 70 VAL ALA LEU ARG ARG GLN GLN ALA GLN GLU GLU GLU LEU SEQRES 6 B 70 GLY ILE SER HIS PRO SEQRES 1 C 70 SER LYS LYS SER PRO ARG LEU PRO LYS CYS ALA ARG CYS SEQRES 2 C 70 ARG ASN HIS GLY TYR ALA SER PRO LEU LYS GLY HIS LYS SEQRES 3 C 70 ARG PHE CYS MET TRP ARG ASP CYS GLN CYS LYS LYS CYS SEQRES 4 C 70 ASN LEU ILE ALA GLU ARG GLN ARG VAL MET ALA ALA GLN SEQRES 5 C 70 VAL ALA LEU ARG ARG GLN GLN ALA GLN GLU GLU GLU LEU SEQRES 6 C 70 GLY ILE SER HIS PRO SEQRES 1 D 25 DC DG DA DG DA DT DT DT DG DA DT DA DC SEQRES 2 D 25 DA DT DT DG DT DT DG DC DT DC DG DA SEQRES 1 E 25 DT DC DG DA DG DC DA DA DC DA DA DT DG SEQRES 2 E 25 DT DA DT DC DA DA DA DT DC DT DC DG HET ZN A 201 1 HET ZN A 202 1 HET ZN B 201 1 HET ZN B 202 1 HET ZN C 201 1 HET ZN C 202 1 HETNAM ZN ZINC ION FORMUL 6 ZN 6(ZN 2+) HELIX 1 AA1 CYS A 76 ASN A 81 1 6 HELIX 2 AA2 CYS A 105 GLU A 129 1 25 HELIX 3 AA3 CYS B 76 GLY B 83 1 8 HELIX 4 AA4 GLY B 90 CYS B 95 1 6 HELIX 5 AA5 CYS B 102 GLU B 129 1 28 HELIX 6 AA6 CYS C 76 GLY C 83 1 8 HELIX 7 AA7 GLY C 90 CYS C 95 1 6 HELIX 8 AA8 CYS C 102 GLU C 129 1 28 LINK SG CYS A 76 ZN ZN A 202 1555 1555 2.75 LINK SG CYS A 79 ZN ZN A 202 1555 1555 2.44 LINK NE2 HIS A 82 ZN ZN A 201 1555 1555 2.39 LINK SG CYS A 95 ZN ZN A 202 1555 1555 2.45 LINK SG CYS A 102 ZN ZN A 201 1555 1555 2.44 LINK SG CYS A 105 ZN ZN A 201 1555 1555 2.93 LINK SG CYS B 76 ZN ZN B 202 1555 1555 2.54 LINK SG CYS B 79 ZN ZN B 202 1555 1555 2.40 LINK NE2 HIS B 82 ZN ZN B 201 1555 1555 2.30 LINK NE2 HIS B 91 ZN ZN B 202 1555 1555 2.52 LINK SG CYS B 95 ZN ZN B 202 1555 1555 2.56 LINK SG CYS B 100 ZN ZN B 201 1555 1555 2.35 LINK SG CYS B 102 ZN ZN B 201 1555 1555 2.77 LINK SG CYS B 105 ZN ZN B 201 1555 1555 2.44 LINK SG CYS C 76 ZN ZN C 202 1555 1555 2.44 LINK SG CYS C 79 ZN ZN C 202 1555 1555 2.43 LINK NE2 HIS C 82 ZN ZN C 201 1555 1555 1.96 LINK NE2 HIS C 91 ZN ZN C 202 1555 1555 2.57 LINK SG CYS C 95 ZN ZN C 202 1555 1555 2.57 LINK SG CYS C 100 ZN ZN C 201 1555 1555 1.94 LINK SG CYS C 102 ZN ZN C 201 1555 1555 1.96 LINK SG CYS C 105 ZN ZN C 201 1555 1555 2.36 CISPEP 1 PRO A 74 LYS A 75 0 14.26 SITE 1 AC1 4 HIS A 82 CYS A 100 CYS A 102 CYS A 105 SITE 1 AC2 4 CYS A 76 CYS A 79 HIS A 91 CYS A 95 SITE 1 AC3 4 HIS B 82 CYS B 100 CYS B 102 CYS B 105 SITE 1 AC4 4 CYS B 76 CYS B 79 HIS B 91 CYS B 95 SITE 1 AC5 4 HIS C 82 CYS C 100 CYS C 102 CYS C 105 SITE 1 AC6 4 CYS C 76 CYS C 79 HIS C 91 CYS C 95 CRYST1 83.185 138.926 141.574 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012021 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007198 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007063 0.00000