HEADER HYDROLASE 03-MAR-15 4YJ6 TITLE THE CRYSTAL STRUCTURE OF A BACTERIAL ARYL ACYLAMIDASE BELONGING TO THE TITLE 2 AMIDASE SIGNATURE (AS) ENZYMES FAMILY COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYL ACYLAMIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.1.13; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTERIUM CSBL00001; SOURCE 3 ORGANISM_TAXID: 641298; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.LEE,E.-H.PARK,H.-J.KO,W.-G.BANG,I.-G.CHOI REVDAT 3 15-NOV-23 4YJ6 1 REMARK REVDAT 2 08-NOV-23 4YJ6 1 JRNL REMARK REVDAT 1 04-NOV-15 4YJ6 0 JRNL AUTH S.LEE,E.-H.PARK,H.-J.KO,W.-G.BANG,H.Y.KIM,K.H.KIM,I.-G.CHOI JRNL TITL CRYSTAL STRUCTURE ANALYSIS OF A BACTERIAL ARYL ACYLAMIDASE JRNL TITL 2 BELONGING TO THE AMIDASE SIGNATURE ENZYME FAMILY JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 467 268 2015 JRNL REFN ESSN 1090-2104 JRNL PMID 26454172 JRNL DOI 10.1016/J.BBRC.2015.09.177 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 68225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.6619 - 2.9068 1.00 6859 200 0.1472 0.1519 REMARK 3 2 2.9068 - 2.5394 1.00 6745 199 0.1464 0.1725 REMARK 3 3 2.5394 - 2.3072 1.00 6727 199 0.1359 0.1560 REMARK 3 4 2.3072 - 2.1418 0.98 6568 196 0.1355 0.1703 REMARK 3 5 2.1418 - 2.0156 0.99 6619 195 0.1415 0.1690 REMARK 3 6 2.0156 - 1.9146 0.98 6516 195 0.1476 0.1879 REMARK 3 7 1.9146 - 1.8313 0.96 6429 191 0.1635 0.1848 REMARK 3 8 1.8313 - 1.7608 0.96 6347 188 0.1794 0.2047 REMARK 3 9 1.7608 - 1.7000 0.94 6271 187 0.2020 0.2315 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.89 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 39.15 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.88250 REMARK 3 B22 (A**2) : 2.88250 REMARK 3 B33 (A**2) : -5.76510 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3803 REMARK 3 ANGLE : 1.454 5175 REMARK 3 CHIRALITY : 0.103 570 REMARK 3 PLANARITY : 0.008 682 REMARK 3 DIHEDRAL : 13.205 1386 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YJ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207552. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : MOSFLM REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69651 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 43.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2F2A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M NAH2PO4/0.8 M K2HPO4, 0.1 M CAPS REMARK 280 PH 10.5, 0.2 M LI2SO4, 0.1 M ZNCL2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.88000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.50000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.88000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 160.50000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.88000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.88000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.50000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.88000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.88000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 160.50000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 107.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 783 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 799 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 831 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 496 REMARK 465 HIS A 497 REMARK 465 HIS A 498 REMARK 465 HIS A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 101 O HOH A 1235 1.56 REMARK 500 OE1 GLN A 264 O HOH A 1108 1.88 REMARK 500 O HOH A 1080 O HOH A 1151 1.95 REMARK 500 OD1 ASP A 105 O HOH A 1262 1.95 REMARK 500 O HOH A 1224 O HOH A 1286 1.98 REMARK 500 O HOH A 1173 O HOH A 1184 2.01 REMARK 500 N SER A 6 O HOH A 1293 2.01 REMARK 500 O HOH A 1030 O HOH A 1084 2.09 REMARK 500 O HOH A 1256 O HOH A 1292 2.11 REMARK 500 O HOH A 825 O HOH A 1106 2.13 REMARK 500 O HOH A 727 O HOH A 813 2.14 REMARK 500 O HOH A 1020 O HOH A 1390 2.16 REMARK 500 NZ LYS A 292 O HOH A 1397 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 767 O HOH A 828 7556 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 464 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 464 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 52 51.36 -116.25 REMARK 500 PHE A 138 52.45 -91.76 REMARK 500 ARG A 139 160.48 177.64 REMARK 500 ASN A 155 106.05 -174.30 REMARK 500 SER A 164 51.04 -90.11 REMARK 500 ASN A 276 15.78 -161.92 REMARK 500 ILE A 428 -8.53 -143.14 REMARK 500 ALA A 466 47.38 -95.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1140 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1183 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH A1251 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A1304 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH A1310 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A1363 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A1413 DISTANCE = 6.17 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YJI RELATED DB: PDB DBREF 4YJ6 A 1 495 UNP C3UWD1 C3UWD1_9BACT 1 495 SEQADV 4YJ6 HIS A 496 UNP C3UWD1 EXPRESSION TAG SEQADV 4YJ6 HIS A 497 UNP C3UWD1 EXPRESSION TAG SEQADV 4YJ6 HIS A 498 UNP C3UWD1 EXPRESSION TAG SEQADV 4YJ6 HIS A 499 UNP C3UWD1 EXPRESSION TAG SEQADV 4YJ6 HIS A 500 UNP C3UWD1 EXPRESSION TAG SEQADV 4YJ6 HIS A 501 UNP C3UWD1 EXPRESSION TAG SEQRES 1 A 501 MSE GLY LYS SER HIS SER PRO VAL HIS TRP LYS SER ALA SEQRES 2 A 501 ALA GLU ILE VAL GLU LEU VAL LYS SER LYS GLN ILE SER SEQRES 3 A 501 PRO ARG GLU VAL VAL GLU SER THR ILE ASP LEU ILE GLU SEQRES 4 A 501 GLN ARG ASP PRO GLY LEU ASN ALA VAL VAL TYR LYS ALA SEQRES 5 A 501 TYR ASP GLU ALA ARG GLU LYS ALA ALA ALA LEU GLU ARG SEQRES 6 A 501 ARG ILE MSE GLN GLY GLU PRO VAL GLY MSE LEU ALA GLY SEQRES 7 A 501 VAL PRO THR LEU MSE LYS ASP LEU PHE ALA ALA LYS PRO SEQRES 8 A 501 GLY TRP PRO SER THR LEU GLY GLY ILE ARG ALA LEU LYS SEQRES 9 A 501 ASP ALA ARG GLY ALA ALA GLY VAL TRP SER THR TYR PRO SEQRES 10 A 501 LEU LYS MSE SER GLY GLU ASP SER LEU LEU LEU GLY GLN SEQRES 11 A 501 THR ASN SER PRO VAL TYR GLY PHE ARG GLY THR THR ASP SEQRES 12 A 501 ASN THR PHE PHE GLY PRO THR ARG ASN PRO PHE ASN LEU SEQRES 13 A 501 ASP PHE ASN ALA GLY GLY SER SER GLY GLY ALA ALA ALA SEQRES 14 A 501 LEU VAL ALA ASP GLY ILE VAL PRO VAL ALA GLY GLY THR SEQRES 15 A 501 ASP GLY GLY GLY SER ILE ARG ILE PRO ALA ALA TRP THR SEQRES 16 A 501 ASN THR TYR GLY PHE GLN PRO SER ILE GLY ARG VAL PRO SEQRES 17 A 501 PHE LYS SER ARG PRO ASN ALA PHE HIS PRO GLY PRO TYR SEQRES 18 A 501 LEU TYR GLU GLY PRO ILE THR ARG THR VAL ARG ASP ALA SEQRES 19 A 501 ALA LEU ALA MSE ASN VAL LEU HIS GLY PHE ASP ARG ARG SEQRES 20 A 501 ASP PRO ALA SER LEU ARG VAL LYS LEU ASP PHE THR SER SEQRES 21 A 501 ALA LEU ALA GLN GLY VAL ARG GLY LYS LYS ILE GLY LEU SEQRES 22 A 501 THR LEU ASN TYR GLY VAL PHE PRO VAL GLN GLN GLU ILE SEQRES 23 A 501 GLN ASP LEU ILE GLY LYS ALA ALA ARG VAL PHE THR GLU SEQRES 24 A 501 LEU GLY ALA HIS VAL GLU PHE VAL ASP LEU GLY ILE PRO SEQRES 25 A 501 TYR SER GLN LYS GLN MSE SER ASP ALA TRP CYS ARG MSE SEQRES 26 A 501 ILE ALA ILE PRO THR VAL ALA SER MSE GLN ALA LEU ARG SEQRES 27 A 501 LYS GLU GLY ILE ASP LEU TYR GLY GLU HIS ARG ALA ASP SEQRES 28 A 501 ILE PRO ASP ALA LEU MSE LYS TRP ILE ASP ALA VAL ALA SEQRES 29 A 501 ASP ILE SER VAL GLN GLN ILE SER ALA ASP GLN LEU LEU SEQRES 30 A 501 ARG THR THR VAL PHE ASP CYS MSE ASN GLY VAL PHE ASP SEQRES 31 A 501 ARG PHE ASP LEU LEU LEU ALA PRO THR LEU ALA CYS MSE SEQRES 32 A 501 PRO VAL ARG ASN ALA THR ASP GLY CYS THR GLU GLY PRO SEQRES 33 A 501 SER GLN ILE ASN GLY GLU GLU ILE ASP PRO LEU ILE GLY SEQRES 34 A 501 TRP CYS MSE THR TYR LEU THR ASN PHE SER GLY HIS PRO SEQRES 35 A 501 SER ALA SER VAL PRO ALA GLY LEU ILE ASP GLY LEU PRO SEQRES 36 A 501 ALA GLY MSE LEU ILE ILE GLY ASP ARG GLN ALA ASP LEU SEQRES 37 A 501 ASP VAL ILE ALA ALA SER ALA ALA PHE GLU ARG ALA SER SEQRES 38 A 501 PRO TRP SER GLN TYR TYR ASP ILE PRO ALA GLY ARG PRO SEQRES 39 A 501 LEU HIS HIS HIS HIS HIS HIS MODRES 4YJ6 MSE A 68 MET MODIFIED RESIDUE MODRES 4YJ6 MSE A 75 MET MODIFIED RESIDUE MODRES 4YJ6 MSE A 83 MET MODIFIED RESIDUE MODRES 4YJ6 MSE A 120 MET MODIFIED RESIDUE MODRES 4YJ6 MSE A 238 MET MODIFIED RESIDUE MODRES 4YJ6 MSE A 318 MET MODIFIED RESIDUE MODRES 4YJ6 MSE A 325 MET MODIFIED RESIDUE MODRES 4YJ6 MSE A 334 MET MODIFIED RESIDUE MODRES 4YJ6 MSE A 357 MET MODIFIED RESIDUE MODRES 4YJ6 MSE A 385 MET MODIFIED RESIDUE MODRES 4YJ6 MSE A 403 MET MODIFIED RESIDUE MODRES 4YJ6 MSE A 432 MET MODIFIED RESIDUE MODRES 4YJ6 MSE A 458 MET MODIFIED RESIDUE HET MSE A 68 12 HET MSE A 75 17 HET MSE A 83 17 HET MSE A 120 17 HET MSE A 238 17 HET MSE A 318 17 HET MSE A 325 17 HET MSE A 334 17 HET MSE A 357 17 HET MSE A 385 17 HET MSE A 403 17 HET MSE A 432 17 HET MSE A 458 17 HET PO4 A 601 5 HET PO4 A 602 5 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 2 PO4 2(O4 P 3-) FORMUL 4 HOH *714(H2 O) HELIX 1 AA1 SER A 12 SER A 22 1 11 HELIX 2 AA2 SER A 26 ASN A 46 1 21 HELIX 3 AA3 ALA A 52 GLY A 70 1 19 HELIX 4 AA4 ILE A 100 LYS A 104 5 5 HELIX 5 AA5 SER A 114 GLU A 123 1 10 HELIX 6 AA6 PRO A 134 PHE A 138 5 5 HELIX 7 AA7 SER A 164 ASP A 173 1 10 HELIX 8 AA8 ARG A 189 THR A 195 1 7 HELIX 9 AA9 THR A 230 HIS A 242 1 13 HELIX 10 AB1 ASP A 257 LEU A 262 5 6 HELIX 11 AB2 GLN A 283 LEU A 300 1 18 HELIX 12 AB3 SER A 314 GLU A 340 1 27 HELIX 13 AB4 HIS A 348 ILE A 352 5 5 HELIX 14 AB5 PRO A 353 ALA A 364 1 12 HELIX 15 AB6 SER A 367 ASP A 390 1 24 HELIX 16 AB7 THR A 433 GLY A 440 1 8 HELIX 17 AB8 ALA A 466 SER A 481 1 16 HELIX 18 AB9 TRP A 483 TYR A 486 5 4 HELIX 19 AC1 TYR A 487 GLY A 492 1 6 SHEET 1 AA1 3 VAL A 48 LYS A 51 0 SHEET 2 AA1 3 LEU A 126 THR A 131 -1 O GLN A 130 N VAL A 49 SHEET 3 AA1 3 PRO A 80 LYS A 84 1 N THR A 81 O LEU A 128 SHEET 1 AA2 2 ARG A 151 ASN A 152 0 SHEET 2 AA2 2 ASN A 155 ASN A 159 -1 O PHE A 158 N ASN A 152 SHEET 1 AA3 8 VAL A 178 ASP A 183 0 SHEET 2 AA3 8 TYR A 223 THR A 228 -1 O GLY A 225 N GLY A 181 SHEET 3 AA3 8 TYR A 198 GLN A 201 -1 N TYR A 198 O THR A 228 SHEET 4 AA3 8 SER A 443 ILE A 451 -1 O SER A 443 N GLN A 201 SHEET 5 AA3 8 LEU A 454 GLY A 462 -1 O MSE A 458 N VAL A 446 SHEET 6 AA3 8 LEU A 394 PRO A 398 -1 N ALA A 397 O LEU A 459 SHEET 7 AA3 8 LYS A 270 LEU A 273 1 N GLY A 272 O LEU A 394 SHEET 8 AA3 8 HIS A 303 PHE A 306 1 O HIS A 303 N ILE A 271 SHEET 1 AA4 2 GLN A 418 ILE A 419 0 SHEET 2 AA4 2 GLU A 422 GLU A 423 -1 O GLU A 422 N ILE A 419 LINK C ILE A 67 N MSE A 68 1555 1555 1.33 LINK C MSE A 68 N GLN A 69 1555 1555 1.33 LINK C GLY A 74 N MSE A 75 1555 1555 1.33 LINK C MSE A 75 N LEU A 76 1555 1555 1.33 LINK C LEU A 82 N MSE A 83 1555 1555 1.34 LINK C MSE A 83 N LYS A 84 1555 1555 1.33 LINK C LYS A 119 N MSE A 120 1555 1555 1.33 LINK C MSE A 120 N SER A 121 1555 1555 1.33 LINK C ALA A 237 N MSE A 238 1555 1555 1.32 LINK C MSE A 238 N ASN A 239 1555 1555 1.33 LINK C GLN A 317 N MSE A 318 1555 1555 1.33 LINK C MSE A 318 N SER A 319 1555 1555 1.33 LINK C ARG A 324 N MSE A 325 1555 1555 1.34 LINK C MSE A 325 N ILE A 326 1555 1555 1.33 LINK C SER A 333 N MSE A 334 1555 1555 1.33 LINK C MSE A 334 N GLN A 335 1555 1555 1.33 LINK C LEU A 356 N MSE A 357 1555 1555 1.33 LINK C MSE A 357 N LYS A 358 1555 1555 1.33 LINK C CYS A 384 N MSE A 385 1555 1555 1.33 LINK C MSE A 385 N ASN A 386 1555 1555 1.33 LINK C CYS A 402 N MSE A 403 1555 1555 1.33 LINK C MSE A 403 N PRO A 404 1555 1555 1.34 LINK C CYS A 431 N MSE A 432 1555 1555 1.34 LINK C MSE A 432 N THR A 433 1555 1555 1.34 LINK C GLY A 457 N MSE A 458 1555 1555 1.33 LINK C MSE A 458 N LEU A 459 1555 1555 1.33 CISPEP 1 GLY A 162 SER A 163 0 5.14 CISPEP 2 ARG A 212 PRO A 213 0 9.47 SITE 1 AC1 6 GLY A 137 SER A 163 GLY A 184 GLY A 185 SITE 2 AC1 6 SER A 187 HOH A 949 SITE 1 AC2 5 ARG A 101 ALA A 102 HIS A 348 ASP A 351 SITE 2 AC2 5 HOH A1233 CRYST1 75.760 75.760 214.000 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013200 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013200 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004673 0.00000