HEADER MEMBRANE PROTEIN 04-MAR-15 4YKP TITLE MNEMIOPSIS LEIDYI ML032222A IGLUR LBD SERINE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ML032222A IGLUR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE CONSTRUCT CONTAINS RESIDUES K409-E526 AND T682- COMPND 7 S815 OF THE ML032222A LIGAND BINDING DOMAIN CONNECTED BY A SYNTHETIC COMPND 8 GT LINKER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MNEMIOPSIS LEIDYI; SOURCE 3 ORGANISM_TAXID: 27923; SOURCE 4 GENE: ML032222A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22 KEYWDS MEMBRANE PROTEIN, GLUTAMATE RECEPTOR, ION CHANNEL EXPDTA X-RAY DIFFRACTION AUTHOR R.G.ALBERSTEIN,M.L.MAYER REVDAT 4 27-SEP-23 4YKP 1 JRNL REMARK LINK REVDAT 3 18-NOV-15 4YKP 1 JRNL REVDAT 2 28-OCT-15 4YKP 1 JRNL REVDAT 1 21-OCT-15 4YKP 0 JRNL AUTH R.ALBERSTEIN,R.GREY,A.ZIMMET,D.K.SIMMONS,M.L.MAYER JRNL TITL GLYCINE ACTIVATED ION CHANNEL SUBUNITS ENCODED BY CTENOPHORE JRNL TITL 2 GLUTAMATE RECEPTOR GENES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 E6048 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26460032 JRNL DOI 10.1073/PNAS.1513771112 REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 91772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 4632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9895 - 4.5274 0.99 3064 203 0.1423 0.1653 REMARK 3 2 4.5274 - 3.5943 1.00 3087 177 0.1096 0.1417 REMARK 3 3 3.5943 - 3.1402 1.00 3063 165 0.1240 0.1441 REMARK 3 4 3.1402 - 2.8532 1.00 3078 155 0.1349 0.1529 REMARK 3 5 2.8532 - 2.6487 0.99 3074 166 0.1403 0.1673 REMARK 3 6 2.6487 - 2.4926 0.99 3050 162 0.1355 0.1724 REMARK 3 7 2.4926 - 2.3678 0.99 3029 149 0.1294 0.1761 REMARK 3 8 2.3678 - 2.2647 0.99 3059 139 0.1272 0.1666 REMARK 3 9 2.2647 - 2.1776 0.99 3007 162 0.1268 0.1453 REMARK 3 10 2.1776 - 2.1024 0.98 3056 146 0.1252 0.1566 REMARK 3 11 2.1024 - 2.0367 0.97 2987 163 0.1235 0.1518 REMARK 3 12 2.0367 - 1.9785 0.98 3002 161 0.1317 0.1589 REMARK 3 13 1.9785 - 1.9264 0.97 2995 145 0.1290 0.1555 REMARK 3 14 1.9264 - 1.8794 0.96 2945 158 0.1384 0.1435 REMARK 3 15 1.8794 - 1.8367 0.96 2952 153 0.1452 0.1635 REMARK 3 16 1.8367 - 1.7976 0.95 2920 164 0.1410 0.1641 REMARK 3 17 1.7976 - 1.7616 0.95 2885 154 0.1420 0.1688 REMARK 3 18 1.7616 - 1.7284 0.94 2928 147 0.1490 0.2047 REMARK 3 19 1.7284 - 1.6975 0.94 2822 156 0.1502 0.1803 REMARK 3 20 1.6975 - 1.6687 0.92 2893 160 0.1571 0.1785 REMARK 3 21 1.6687 - 1.6418 0.94 2824 151 0.1545 0.1756 REMARK 3 22 1.6418 - 1.6166 0.91 2830 156 0.1540 0.1714 REMARK 3 23 1.6166 - 1.5928 0.92 2815 130 0.1615 0.2061 REMARK 3 24 1.5928 - 1.5703 0.90 2776 155 0.1691 0.2113 REMARK 3 25 1.5703 - 1.5491 0.91 2756 153 0.1722 0.1940 REMARK 3 26 1.5491 - 1.5290 0.90 2766 149 0.1749 0.2229 REMARK 3 27 1.5290 - 1.5099 0.89 2764 137 0.1863 0.1893 REMARK 3 28 1.5099 - 1.4917 0.89 2723 151 0.2017 0.2276 REMARK 3 29 1.4917 - 1.4743 0.88 2672 137 0.2173 0.2483 REMARK 3 30 1.4743 - 1.4578 0.75 2318 128 0.2245 0.2411 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4274 REMARK 3 ANGLE : 1.256 5776 REMARK 3 CHIRALITY : 0.074 614 REMARK 3 PLANARITY : 0.006 761 REMARK 3 DIHEDRAL : 12.953 1578 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 5:28) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4449 54.3678 50.7059 REMARK 3 T TENSOR REMARK 3 T11: 0.1117 T22: 0.1273 REMARK 3 T33: 0.1746 T12: 0.0039 REMARK 3 T13: -0.0111 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.3147 L22: 1.0170 REMARK 3 L33: 0.5792 L12: -0.2908 REMARK 3 L13: 0.0362 L23: -0.6863 REMARK 3 S TENSOR REMARK 3 S11: 0.0690 S12: -0.0601 S13: -0.1450 REMARK 3 S21: -0.0120 S22: -0.0250 S23: -0.0309 REMARK 3 S31: 0.1253 S32: 0.0944 S33: -0.0418 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 29:55) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1250 57.8547 51.7624 REMARK 3 T TENSOR REMARK 3 T11: 0.1047 T22: 0.1349 REMARK 3 T33: 0.1829 T12: 0.0129 REMARK 3 T13: -0.0273 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.8898 L22: 0.8901 REMARK 3 L33: 1.7118 L12: 0.0711 REMARK 3 L13: 0.3714 L23: 0.5517 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: -0.0183 S13: 0.0079 REMARK 3 S21: 0.0609 S22: -0.0347 S23: -0.1913 REMARK 3 S31: 0.0397 S32: 0.2240 S33: 0.0117 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 56:88) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8815 56.5284 55.8755 REMARK 3 T TENSOR REMARK 3 T11: 0.1050 T22: 0.1259 REMARK 3 T33: 0.1724 T12: -0.0115 REMARK 3 T13: 0.0015 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 1.8019 L22: 1.5194 REMARK 3 L33: 1.7767 L12: 0.0870 REMARK 3 L13: 0.4871 L23: 0.0149 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: -0.1808 S13: -0.0794 REMARK 3 S21: 0.0654 S22: 0.0011 S23: 0.1792 REMARK 3 S31: 0.0950 S32: -0.1719 S33: 0.0144 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 89:220) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7754 60.9322 37.2284 REMARK 3 T TENSOR REMARK 3 T11: 0.1538 T22: 0.1673 REMARK 3 T33: 0.1782 T12: -0.0047 REMARK 3 T13: -0.0161 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 2.1626 L22: 0.3862 REMARK 3 L33: 1.1364 L12: 0.2336 REMARK 3 L13: 0.4236 L23: 0.1226 REMARK 3 S TENSOR REMARK 3 S11: -0.0615 S12: 0.3916 S13: -0.1054 REMARK 3 S21: -0.1349 S22: 0.0176 S23: 0.0275 REMARK 3 S31: 0.0087 S32: -0.0310 S33: 0.0657 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 221:241) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9553 71.9434 51.9728 REMARK 3 T TENSOR REMARK 3 T11: 0.1061 T22: 0.1331 REMARK 3 T33: 0.1608 T12: -0.0030 REMARK 3 T13: -0.0333 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 1.1957 L22: 1.2845 REMARK 3 L33: 4.0002 L12: 0.1805 REMARK 3 L13: -0.9555 L23: -0.4108 REMARK 3 S TENSOR REMARK 3 S11: 0.0069 S12: -0.1415 S13: 0.0622 REMARK 3 S21: 0.1424 S22: -0.0214 S23: -0.1051 REMARK 3 S31: -0.0663 S32: -0.0652 S33: 0.0541 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 242:251) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2957 62.3526 35.6437 REMARK 3 T TENSOR REMARK 3 T11: 0.1504 T22: 0.2235 REMARK 3 T33: 0.1637 T12: -0.0344 REMARK 3 T13: -0.0019 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 6.5641 L22: 6.0287 REMARK 3 L33: 3.8366 L12: -1.1040 REMARK 3 L13: 0.4187 L23: -0.7881 REMARK 3 S TENSOR REMARK 3 S11: -0.3375 S12: 0.6594 S13: -0.0842 REMARK 3 S21: -0.4449 S22: 0.0746 S23: 0.0930 REMARK 3 S31: 0.0099 S32: -0.0280 S33: 0.2265 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 1:21) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1186 91.0313 53.4394 REMARK 3 T TENSOR REMARK 3 T11: 0.1011 T22: 0.0938 REMARK 3 T33: 0.1049 T12: 0.0095 REMARK 3 T13: -0.0216 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 2.1203 L22: 0.5424 REMARK 3 L33: 2.5188 L12: 0.1315 REMARK 3 L13: -0.8869 L23: 0.5998 REMARK 3 S TENSOR REMARK 3 S11: -0.0165 S12: -0.0953 S13: -0.0988 REMARK 3 S21: 0.0693 S22: 0.0139 S23: 0.0451 REMARK 3 S31: 0.1645 S32: -0.0468 S33: 0.0428 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 22:41) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3108 99.1323 44.7107 REMARK 3 T TENSOR REMARK 3 T11: 0.1178 T22: 0.1248 REMARK 3 T33: 0.1174 T12: 0.0290 REMARK 3 T13: -0.0153 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.1665 L22: 2.5377 REMARK 3 L33: 1.3203 L12: 0.0162 REMARK 3 L13: -0.1142 L23: 0.3886 REMARK 3 S TENSOR REMARK 3 S11: 0.0289 S12: 0.0819 S13: 0.1568 REMARK 3 S21: 0.0147 S22: -0.0031 S23: -0.0902 REMARK 3 S31: -0.2168 S32: -0.1533 S33: -0.0119 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 42:86) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5260 93.4855 53.6045 REMARK 3 T TENSOR REMARK 3 T11: 0.0842 T22: 0.0891 REMARK 3 T33: 0.0826 T12: 0.0008 REMARK 3 T13: -0.0184 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.4950 L22: 1.0131 REMARK 3 L33: 1.2328 L12: 0.0538 REMARK 3 L13: -0.5040 L23: 0.0797 REMARK 3 S TENSOR REMARK 3 S11: -0.0046 S12: -0.1330 S13: 0.0403 REMARK 3 S21: 0.0421 S22: 0.0156 S23: -0.0540 REMARK 3 S31: -0.0524 S32: 0.0906 S33: -0.0103 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 87:220) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8999 88.4858 36.0703 REMARK 3 T TENSOR REMARK 3 T11: 0.0966 T22: 0.1064 REMARK 3 T33: 0.0991 T12: -0.0043 REMARK 3 T13: -0.0200 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.0003 L22: 0.1955 REMARK 3 L33: 1.6371 L12: 0.1457 REMARK 3 L13: -0.8337 L23: -0.2697 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: 0.0922 S13: -0.0686 REMARK 3 S21: -0.0451 S22: -0.0077 S23: -0.0244 REMARK 3 S31: 0.0128 S32: 0.0224 S33: 0.0206 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 221:244) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4811 79.3878 50.1314 REMARK 3 T TENSOR REMARK 3 T11: 0.0914 T22: 0.1185 REMARK 3 T33: 0.1514 T12: -0.0056 REMARK 3 T13: -0.0067 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.9046 L22: 0.7092 REMARK 3 L33: 2.9234 L12: -0.0512 REMARK 3 L13: 0.7116 L23: 0.1230 REMARK 3 S TENSOR REMARK 3 S11: 0.0269 S12: 0.0532 S13: -0.1717 REMARK 3 S21: 0.0391 S22: -0.0239 S23: 0.0944 REMARK 3 S31: 0.1908 S32: 0.0153 S33: 0.0440 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 245:255) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4494 88.9135 29.2171 REMARK 3 T TENSOR REMARK 3 T11: 0.2146 T22: 0.4438 REMARK 3 T33: 0.1554 T12: -0.0283 REMARK 3 T13: -0.0138 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 2.2271 L22: 0.4449 REMARK 3 L33: 1.4483 L12: 0.4586 REMARK 3 L13: -1.7856 L23: -0.4646 REMARK 3 S TENSOR REMARK 3 S11: -0.1920 S12: 1.0341 S13: 0.1156 REMARK 3 S21: -0.4565 S22: 0.0625 S23: -0.1841 REMARK 3 S31: -0.1987 S32: 0.0590 S33: 0.0304 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YKP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92758 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.53600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4YKI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 23% PEG 8K, 100 MM REMARK 280 CACODYLATE, 150 MM MGS04. PROTEIN BUFFER: 100 MM NACL, 10 MM REMARK 280 HEPES, PH 7.0, 0.5 MM EDTA, 100 MM SERINE, NO ADDED GLYCINE, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 61.71000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 ASN A 4 REMARK 465 ASN A 252 REMARK 465 SER A 253 REMARK 465 VAL A 254 REMARK 465 CYS A 255 REMARK 465 SER A 256 REMARK 465 SER B 256 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 689 O HOH B 728 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 134 23.13 -143.48 REMARK 500 ASP A 187 -144.61 -152.81 REMARK 500 GLN A 210 142.84 73.90 REMARK 500 GLU B 17 95.01 -161.53 REMARK 500 ASP B 187 -139.81 -149.60 REMARK 500 GLN B 210 141.19 71.26 REMARK 500 ASN B 252 -165.15 58.54 REMARK 500 SER B 253 137.76 -174.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 759 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B 783 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH B 804 DISTANCE = 6.31 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 110 OD1 REMARK 620 2 GLU A 213 OE2 83.8 REMARK 620 3 HOH A 487 O 87.7 90.4 REMARK 620 4 ASP B 110 OD1 97.9 173.0 96.4 REMARK 620 5 GLU B 213 OE2 171.0 94.6 83.4 84.8 REMARK 620 6 HOH B 509 O 97.6 85.1 172.6 88.0 91.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SER A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SER B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YKI RELATED DB: PDB REMARK 900 SAME PROTEIN WITH GLYCINE REMARK 900 RELATED ID: 4YKJ RELATED DB: PDB REMARK 900 SAME PROTEIN WITH ALANINE REMARK 900 RELATED ID: 4YKK RELATED DB: PDB REMARK 900 SAME PROTEIN WITH D-SERINE REMARK 900 RELATED ID: 4YKV RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT CONTAINS RESIDUES K409-E526 AND T682-S815 OF THE REMARK 999 ML032222A LIGAND BINDING DOMAIN CONNECTED BY A SYNTHETIC GT LINKER DBREF 4YKP A 1 256 PDB 4YKP 4YKP 1 256 DBREF 4YKP B 1 256 PDB 4YKP 4YKP 1 256 SEQRES 1 A 256 GLY SER LYS ASN LEU ILE GLY ARG HIS LEU ARG LEU GLY SEQRES 2 A 256 SER VAL GLU GLU GLN PRO PHE MET PHE PHE ALA THR GLU SEQRES 3 A 256 GLY CYS GLU GLY ASN ASP CYS TRP SER GLY MET VAL ASN SEQRES 4 A 256 ASP MET VAL VAL LYS LEU SER GLU ASP LEU GLY PHE THR SEQRES 5 A 256 TYR GLU TYR ILE GLN PRO ASP ASP ARG LYS PHE GLY ALA SEQRES 6 A 256 LEU ASN LYS THR THR ASN GLU TRP ASN GLY MET ILE ARG SEQRES 7 A 256 ASP LEU LEU ASP ASP LYS THR ASP MET ILE ALA ILE ASP SEQRES 8 A 256 LEU SER THR ASN SER ALA ARG LYS SER ALA ILE ASP TYR SEQRES 9 A 256 SER PHE PRO PHE MET ASP ALA GLY ILE LYS ALA VAL VAL SEQRES 10 A 256 LYS GLY GLU GLY THR THR LEU ASN GLN VAL LEU GLU LEU SEQRES 11 A 256 LEU ASP GLN ASP LYS TYR LYS TRP GLY VAL ILE GLY SER SEQRES 12 A 256 ARG HIS PRO GLU THR LEU LEU LYS THR HIS ARG ASP SER SEQRES 13 A 256 ARG TYR SER ARG LEU VAL ASP GLU GLY VAL GLU LEU LYS SEQRES 14 A 256 ASP LEU ASN HIS ALA ILE GLU THR LEU ARG GLY GLY LEU SEQRES 15 A 256 PHE VAL PHE ILE ASP GLU GLY PRO VAL LEU ALA HIS ASN SEQRES 16 A 256 LEU ILE SER ASP CYS ASP VAL PHE SER VAL GLY GLU GLU SEQRES 17 A 256 PHE GLN SER PHE GLU TYR ALA PHE GLY LEU PRO LYS ASP SEQRES 18 A 256 SER PRO TYR LYS SER LEU ILE ASP SER HIS LEU LEU LYS SEQRES 19 A 256 PHE ARG GLU GLU GLY PHE ILE ASP ILE LEU TRP GLU LYS SEQRES 20 A 256 TRP SER SER GLY ASN SER VAL CYS SER SEQRES 1 B 256 GLY SER LYS ASN LEU ILE GLY ARG HIS LEU ARG LEU GLY SEQRES 2 B 256 SER VAL GLU GLU GLN PRO PHE MET PHE PHE ALA THR GLU SEQRES 3 B 256 GLY CYS GLU GLY ASN ASP CYS TRP SER GLY MET VAL ASN SEQRES 4 B 256 ASP MET VAL VAL LYS LEU SER GLU ASP LEU GLY PHE THR SEQRES 5 B 256 TYR GLU TYR ILE GLN PRO ASP ASP ARG LYS PHE GLY ALA SEQRES 6 B 256 LEU ASN LYS THR THR ASN GLU TRP ASN GLY MET ILE ARG SEQRES 7 B 256 ASP LEU LEU ASP ASP LYS THR ASP MET ILE ALA ILE ASP SEQRES 8 B 256 LEU SER THR ASN SER ALA ARG LYS SER ALA ILE ASP TYR SEQRES 9 B 256 SER PHE PRO PHE MET ASP ALA GLY ILE LYS ALA VAL VAL SEQRES 10 B 256 LYS GLY GLU GLY THR THR LEU ASN GLN VAL LEU GLU LEU SEQRES 11 B 256 LEU ASP GLN ASP LYS TYR LYS TRP GLY VAL ILE GLY SER SEQRES 12 B 256 ARG HIS PRO GLU THR LEU LEU LYS THR HIS ARG ASP SER SEQRES 13 B 256 ARG TYR SER ARG LEU VAL ASP GLU GLY VAL GLU LEU LYS SEQRES 14 B 256 ASP LEU ASN HIS ALA ILE GLU THR LEU ARG GLY GLY LEU SEQRES 15 B 256 PHE VAL PHE ILE ASP GLU GLY PRO VAL LEU ALA HIS ASN SEQRES 16 B 256 LEU ILE SER ASP CYS ASP VAL PHE SER VAL GLY GLU GLU SEQRES 17 B 256 PHE GLN SER PHE GLU TYR ALA PHE GLY LEU PRO LYS ASP SEQRES 18 B 256 SER PRO TYR LYS SER LEU ILE ASP SER HIS LEU LEU LYS SEQRES 19 B 256 PHE ARG GLU GLU GLY PHE ILE ASP ILE LEU TRP GLU LYS SEQRES 20 B 256 TRP SER SER GLY ASN SER VAL CYS SER HET GLY A 301 10 HET SER A 302 14 HET MG A 303 1 HET GLY B 301 10 HET SER B 302 14 HETNAM GLY GLYCINE HETNAM SER SERINE HETNAM MG MAGNESIUM ION FORMUL 3 GLY 2(C2 H5 N O2) FORMUL 4 SER 2(C3 H7 N O3) FORMUL 5 MG MG 2+ FORMUL 8 HOH *743(H2 O) HELIX 1 AA1 GLU A 29 ASP A 32 5 4 HELIX 2 AA2 GLY A 36 GLY A 50 1 15 HELIX 3 AA3 ASN A 74 ASP A 82 1 9 HELIX 4 AA4 ASN A 95 SER A 100 1 6 HELIX 5 AA5 GLN A 126 GLN A 133 5 8 HELIX 6 AA6 ARG A 144 HIS A 153 1 10 HELIX 7 AA7 SER A 156 GLY A 165 1 10 HELIX 8 AA8 ASP A 170 GLY A 180 1 11 HELIX 9 AA9 GLY A 189 LEU A 196 1 8 HELIX 10 AB1 TYR A 224 GLU A 238 1 15 HELIX 11 AB2 GLY A 239 SER A 249 1 11 HELIX 12 AB3 GLU B 29 ASP B 32 5 4 HELIX 13 AB4 GLY B 36 GLY B 50 1 15 HELIX 14 AB5 ASN B 74 ASP B 82 1 9 HELIX 15 AB6 ASN B 95 SER B 100 1 6 HELIX 16 AB7 GLN B 126 GLN B 133 5 8 HELIX 17 AB8 ARG B 144 HIS B 153 1 10 HELIX 18 AB9 SER B 156 GLY B 165 1 10 HELIX 19 AC1 ASP B 170 GLY B 180 1 11 HELIX 20 AC2 GLY B 189 LEU B 196 1 8 HELIX 21 AC3 TYR B 224 GLU B 238 1 15 HELIX 22 AC4 GLY B 239 SER B 249 1 11 SHEET 1 AA1 8 THR A 52 ILE A 56 0 SHEET 2 AA1 8 HIS A 9 GLY A 13 1 N LEU A 12 O GLU A 54 SHEET 3 AA1 8 MET A 87 SER A 93 1 O MET A 87 N GLY A 13 SHEET 4 AA1 8 PHE A 209 LEU A 218 -1 O GLY A 217 N ILE A 88 SHEET 5 AA1 8 MET A 109 LYS A 118 -1 N ILE A 113 O PHE A 209 SHEET 6 AA1 8 PHE A 183 GLU A 188 -1 O ASP A 187 N LYS A 114 SHEET 7 AA1 8 LYS A 137 ILE A 141 1 N LYS A 137 O VAL A 184 SHEET 8 AA1 8 VAL A 166 LEU A 168 1 O VAL A 166 N TRP A 138 SHEET 1 AA2 4 ASP A 103 TYR A 104 0 SHEET 2 AA2 4 PHE A 209 LEU A 218 -1 O LEU A 218 N ASP A 103 SHEET 3 AA2 4 MET A 109 LYS A 118 -1 N ILE A 113 O PHE A 209 SHEET 4 AA2 4 VAL A 202 SER A 204 -1 O PHE A 203 N VAL A 117 SHEET 1 AA3 2 PHE A 22 PHE A 23 0 SHEET 2 AA3 2 TRP A 34 SER A 35 -1 O SER A 35 N PHE A 22 SHEET 1 AA4 2 LEU A 66 ASN A 67 0 SHEET 2 AA4 2 GLU A 72 TRP A 73 -1 O GLU A 72 N ASN A 67 SHEET 1 AA5 8 THR B 52 ILE B 56 0 SHEET 2 AA5 8 HIS B 9 GLY B 13 1 N LEU B 12 O GLU B 54 SHEET 3 AA5 8 MET B 87 SER B 93 1 O MET B 87 N GLY B 13 SHEET 4 AA5 8 PHE B 209 LEU B 218 -1 O GLY B 217 N ILE B 88 SHEET 5 AA5 8 MET B 109 LYS B 118 -1 N ILE B 113 O PHE B 209 SHEET 6 AA5 8 PHE B 183 GLU B 188 -1 O ASP B 187 N LYS B 114 SHEET 7 AA5 8 LYS B 137 ILE B 141 1 N GLY B 139 O ILE B 186 SHEET 8 AA5 8 VAL B 166 LEU B 168 1 O VAL B 166 N TRP B 138 SHEET 1 AA6 4 ASP B 103 TYR B 104 0 SHEET 2 AA6 4 PHE B 209 LEU B 218 -1 O LEU B 218 N ASP B 103 SHEET 3 AA6 4 MET B 109 LYS B 118 -1 N ILE B 113 O PHE B 209 SHEET 4 AA6 4 VAL B 202 SER B 204 -1 O PHE B 203 N VAL B 117 SHEET 1 AA7 2 PHE B 22 PHE B 23 0 SHEET 2 AA7 2 TRP B 34 SER B 35 -1 O SER B 35 N PHE B 22 SSBOND 1 CYS A 28 CYS A 33 1555 1555 2.08 SSBOND 2 CYS B 28 CYS B 33 1555 1555 2.11 SSBOND 3 CYS B 200 CYS B 255 1555 1555 2.03 LINK OD1 ASP A 110 MG MG A 303 1555 1555 2.06 LINK OE2 GLU A 213 MG MG A 303 1555 1555 1.98 LINK MG MG A 303 O HOH A 487 1555 1555 2.10 LINK MG MG A 303 OD1 ASP B 110 1555 1555 2.05 LINK MG MG A 303 OE2 GLU B 213 1555 1555 2.04 LINK MG MG A 303 O HOH B 509 1555 1555 2.14 CISPEP 1 GLN A 18 PRO A 19 0 7.20 CISPEP 2 SER A 250 GLY A 251 0 0.27 CISPEP 3 GLN B 18 PRO B 19 0 7.36 SITE 1 AC1 9 GLU A 17 PHE A 63 ASP A 91 SER A 93 SITE 2 AC1 9 ARG A 98 ARG A 144 HIS A 145 GLU A 188 SITE 3 AC1 9 SER A 302 SITE 1 AC2 11 GLU A 17 PHE A 63 ASP A 91 LEU A 92 SITE 2 AC2 11 SER A 93 ARG A 98 ARG A 144 HIS A 145 SITE 3 AC2 11 GLU A 188 TYR A 214 GLY A 301 SITE 1 AC3 6 ASP A 110 GLU A 213 HOH A 487 ASP B 110 SITE 2 AC3 6 GLU B 213 HOH B 509 SITE 1 AC4 8 PHE B 63 ASP B 91 SER B 93 ARG B 98 SITE 2 AC4 8 ARG B 144 HIS B 145 GLU B 188 SER B 302 SITE 1 AC5 11 GLU B 17 PHE B 63 ASP B 91 LEU B 92 SITE 2 AC5 11 SER B 93 ARG B 98 ARG B 144 HIS B 145 SITE 3 AC5 11 GLU B 188 TYR B 214 GLY B 301 CRYST1 45.862 123.420 54.258 90.00 112.10 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021805 0.000000 0.008854 0.00000 SCALE2 0.000000 0.008102 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019892 0.00000