HEADER SIGNALING PROTEIN 05-MAR-15 4YLG TITLE STRUCTURE OF AN ADP RIBOSYLATION FACTOR FROM ENTAMOEBA HISTOLYTICA HM- TITLE 2 1:IMSS BOUND TO MG-GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLATION FACTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SMALL GTPASE ARFA1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTAMOEBA HISTOLYTICA HM-1:IMSS; SOURCE 3 ORGANISM_TAXID: 294381; SOURCE 4 GENE: EHI_073470, EHI_137720; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SIGNALING PROTEIN, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS KEYWDS 2 CENTER FOR INFECTIOUS DISEASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 27-SEP-23 4YLG 1 SOURCE REMARK LINK REVDAT 1 20-MAY-15 4YLG 0 JRNL AUTH D.A.SERBZHINSKIY,M.C.CLIFTON,B.SANKARAN,B.L.STAKER, JRNL AUTH 2 T.E.EDWARDS,P.J.MYLER JRNL TITL STRUCTURE OF AN ADP-RIBOSYLATION FACTOR, ARF1, FROM JRNL TITL 2 ENTAMOEBA HISTOLYTICA BOUND TO MG(2+)-GDP. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 71 594 2015 JRNL REFN ESSN 2053-230X JRNL PMID 25945714 JRNL DOI 10.1107/S2053230X15004677 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 34061 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7299 - 4.1094 0.99 2959 182 0.1582 0.1926 REMARK 3 2 4.1094 - 3.2665 0.96 2779 156 0.1665 0.2074 REMARK 3 3 3.2665 - 2.8550 0.99 2871 163 0.1841 0.2075 REMARK 3 4 2.8550 - 2.5946 0.97 2779 159 0.2022 0.2522 REMARK 3 5 2.5946 - 2.4090 0.99 2862 133 0.1996 0.2762 REMARK 3 6 2.4090 - 2.2672 0.93 2676 149 0.2417 0.3075 REMARK 3 7 2.2672 - 2.1538 0.88 2571 111 0.3342 0.4500 REMARK 3 8 2.1538 - 2.0601 0.91 2629 135 0.3196 0.3835 REMARK 3 9 2.0601 - 1.9809 0.93 2681 132 0.2699 0.3363 REMARK 3 10 1.9809 - 1.9126 0.85 2414 133 0.4194 0.4861 REMARK 3 11 1.9126 - 1.8528 0.82 2337 115 0.3738 0.4753 REMARK 3 12 1.8528 - 1.8000 0.97 2801 134 0.2320 0.3025 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2649 REMARK 3 ANGLE : 1.140 3619 REMARK 3 CHIRALITY : 0.052 430 REMARK 3 PLANARITY : 0.004 445 REMARK 3 DIHEDRAL : 14.306 967 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.8532 11.3646 4.1695 REMARK 3 T TENSOR REMARK 3 T11: 0.5105 T22: 0.5719 REMARK 3 T33: -0.0383 T12: -0.0863 REMARK 3 T13: 0.0935 T23: -0.0964 REMARK 3 L TENSOR REMARK 3 L11: 0.1832 L22: 1.0038 REMARK 3 L33: 0.0589 L12: 0.0357 REMARK 3 L13: 0.0389 L23: -0.2117 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: 0.0257 S13: 0.0454 REMARK 3 S21: -0.1572 S22: 0.0246 S23: -0.0400 REMARK 3 S31: -0.4022 S32: -0.1021 S33: -0.0398 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.2345 12.8716 18.5963 REMARK 3 T TENSOR REMARK 3 T11: 0.1773 T22: 0.1356 REMARK 3 T33: 0.0388 T12: -0.0641 REMARK 3 T13: -0.0136 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 2.4259 L22: 2.1981 REMARK 3 L33: 2.6664 L12: -0.4976 REMARK 3 L13: -0.0571 L23: 0.8050 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: 0.2985 S13: 0.0918 REMARK 3 S21: -0.0840 S22: 0.2147 S23: 0.0117 REMARK 3 S31: 0.0486 S32: 0.2119 S33: -0.1160 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.6138 4.6452 16.5346 REMARK 3 T TENSOR REMARK 3 T11: 0.1162 T22: 0.1895 REMARK 3 T33: 0.0729 T12: -0.0228 REMARK 3 T13: 0.0024 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 3.4771 L22: 5.2030 REMARK 3 L33: 3.9631 L12: 0.5379 REMARK 3 L13: -0.6238 L23: -0.7067 REMARK 3 S TENSOR REMARK 3 S11: -0.0841 S12: 0.0538 S13: -0.2416 REMARK 3 S21: -0.1169 S22: 0.0522 S23: 0.0764 REMARK 3 S31: 0.2591 S32: -0.0708 S33: 0.0318 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.9515 6.1737 15.1046 REMARK 3 T TENSOR REMARK 3 T11: 0.1288 T22: 0.2808 REMARK 3 T33: 0.0453 T12: -0.0222 REMARK 3 T13: 0.0159 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 0.8418 L22: 1.9901 REMARK 3 L33: 4.1686 L12: -0.0923 REMARK 3 L13: -1.8306 L23: 0.5929 REMARK 3 S TENSOR REMARK 3 S11: 0.0857 S12: 0.6418 S13: 0.1338 REMARK 3 S21: -0.1115 S22: 0.0723 S23: 0.1768 REMARK 3 S31: -0.0193 S32: -0.1525 S33: -0.1202 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.3230 0.7577 23.9914 REMARK 3 T TENSOR REMARK 3 T11: 0.5313 T22: 0.2266 REMARK 3 T33: 0.3523 T12: -0.0344 REMARK 3 T13: 0.0153 T23: -0.0503 REMARK 3 L TENSOR REMARK 3 L11: 3.2735 L22: 5.7017 REMARK 3 L33: 0.5584 L12: 1.1583 REMARK 3 L13: 0.6017 L23: -1.3263 REMARK 3 S TENSOR REMARK 3 S11: -0.3662 S12: 0.3858 S13: -1.2373 REMARK 3 S21: 0.1636 S22: -0.3256 S23: 0.0742 REMARK 3 S31: 1.2699 S32: -0.4276 S33: 0.5804 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.6154 15.5761 24.2041 REMARK 3 T TENSOR REMARK 3 T11: 0.1163 T22: 0.0485 REMARK 3 T33: 0.0209 T12: -0.0242 REMARK 3 T13: -0.0280 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 4.8875 L22: 4.6786 REMARK 3 L33: 4.8212 L12: -2.5814 REMARK 3 L13: -1.9342 L23: 1.8141 REMARK 3 S TENSOR REMARK 3 S11: -0.1470 S12: 0.0674 S13: -0.0940 REMARK 3 S21: 0.2793 S22: 0.0919 S23: -0.0053 REMARK 3 S31: 0.0626 S32: 0.0214 S33: 0.0769 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.6818 13.0793 33.3352 REMARK 3 T TENSOR REMARK 3 T11: 0.2590 T22: 0.1585 REMARK 3 T33: 0.0550 T12: -0.0381 REMARK 3 T13: -0.0622 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 2.5974 L22: 4.3070 REMARK 3 L33: 4.3145 L12: -1.4697 REMARK 3 L13: -1.1595 L23: 3.2994 REMARK 3 S TENSOR REMARK 3 S11: -0.1646 S12: -0.0479 S13: -0.2738 REMARK 3 S21: 0.3788 S22: 0.2631 S23: -0.1771 REMARK 3 S31: 0.2773 S32: 0.0953 S33: -0.1009 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.6766 10.0099 21.6171 REMARK 3 T TENSOR REMARK 3 T11: 0.1496 T22: 0.1743 REMARK 3 T33: 0.1321 T12: -0.0033 REMARK 3 T13: -0.0105 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 5.5418 L22: 4.4539 REMARK 3 L33: 5.0775 L12: -1.6823 REMARK 3 L13: -0.9691 L23: 1.2481 REMARK 3 S TENSOR REMARK 3 S11: -0.0772 S12: 0.1740 S13: -0.5552 REMARK 3 S21: 0.1998 S22: -0.0110 S23: -0.2715 REMARK 3 S31: 0.4745 S32: 0.5800 S33: 0.0538 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.8293 27.0891 29.3006 REMARK 3 T TENSOR REMARK 3 T11: 0.2179 T22: 0.0936 REMARK 3 T33: 0.2273 T12: -0.0206 REMARK 3 T13: -0.0386 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 3.0058 L22: 3.7047 REMARK 3 L33: 2.4456 L12: -2.7023 REMARK 3 L13: 2.0932 L23: -1.5024 REMARK 3 S TENSOR REMARK 3 S11: -0.3489 S12: -0.1759 S13: 0.8003 REMARK 3 S21: 0.1083 S22: 0.1739 S23: -0.3373 REMARK 3 S31: -0.5165 S32: 0.0186 S33: 0.1598 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.9982 19.6240 22.2056 REMARK 3 T TENSOR REMARK 3 T11: 0.1591 T22: 0.1201 REMARK 3 T33: 0.1474 T12: -0.0723 REMARK 3 T13: 0.0304 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 2.4573 L22: 1.8345 REMARK 3 L33: 3.1989 L12: 1.0131 REMARK 3 L13: -0.8365 L23: 1.1319 REMARK 3 S TENSOR REMARK 3 S11: -0.0332 S12: 0.2441 S13: 0.1731 REMARK 3 S21: -0.2188 S22: 0.1529 S23: -0.3886 REMARK 3 S31: -0.2965 S32: 0.3928 S33: -0.0864 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.1750 18.2541 12.3359 REMARK 3 T TENSOR REMARK 3 T11: 0.3049 T22: 0.3151 REMARK 3 T33: 0.1334 T12: -0.0975 REMARK 3 T13: 0.0977 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 7.0495 L22: 3.8091 REMARK 3 L33: 3.3519 L12: -1.6104 REMARK 3 L13: -0.4918 L23: 0.0483 REMARK 3 S TENSOR REMARK 3 S11: 0.2757 S12: 0.9105 S13: 0.4535 REMARK 3 S21: -0.8728 S22: -0.0461 S23: -0.4290 REMARK 3 S31: -0.3052 S32: 0.4299 S33: -0.1734 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9836 5.1532 16.3391 REMARK 3 T TENSOR REMARK 3 T11: 0.1347 T22: 0.2108 REMARK 3 T33: 0.1415 T12: -0.0369 REMARK 3 T13: -0.0148 T23: -0.0592 REMARK 3 L TENSOR REMARK 3 L11: 2.2583 L22: 3.1951 REMARK 3 L33: 2.6858 L12: 0.0965 REMARK 3 L13: 0.0419 L23: -0.2580 REMARK 3 S TENSOR REMARK 3 S11: -0.0809 S12: 0.5339 S13: -0.2332 REMARK 3 S21: -0.2733 S22: 0.0007 S23: 0.2965 REMARK 3 S31: 0.0635 S32: -0.1812 S33: 0.0058 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 65 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0431 5.1197 28.2981 REMARK 3 T TENSOR REMARK 3 T11: 0.1226 T22: 0.0538 REMARK 3 T33: 0.1622 T12: -0.0205 REMARK 3 T13: 0.0217 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 2.4348 L22: 2.8878 REMARK 3 L33: 2.7967 L12: -0.2076 REMARK 3 L13: 0.0423 L23: 0.2219 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: 0.2098 S13: 0.0031 REMARK 3 S21: 0.0087 S22: -0.0212 S23: 0.2933 REMARK 3 S31: -0.1307 S32: -0.1224 S33: 0.0383 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YLG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207654. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : ASYMMETRIC CUT SINGLE CRYSTAL REMARK 200 SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34091 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.729 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 4.120 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.240 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1R8S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% ETHANOL, 0.1M TRIS, CRYOPROTECTION REMARK 280 25% ETHYLENE GLYCOL, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.77000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.77000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.33000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 329 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLN A 67 REMARK 465 ASP A 68 REMARK 465 LYS A 69 REMARK 465 ILE A 70 REMARK 465 ARG A 71 REMARK 465 PRO A 72 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 GLN B 67 REMARK 465 ASP B 68 REMARK 465 LYS B 69 REMARK 465 ILE B 70 REMARK 465 ARG B 71 REMARK 465 PRO B 72 REMARK 465 LEU B 73 REMARK 465 TRP B 74 REMARK 465 ARG B 75 REMARK 465 HIS B 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 12 CG CD CE NZ REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 76 CG ND1 CD2 CE1 NE2 REMARK 470 TYR A 77 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 79 CG CD OE1 NE2 REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 TYR A 163 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 LYS B 12 CG CD CE NZ REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 TYR B 77 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR B 78 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN B 79 CG CD OE1 NE2 REMARK 470 ASN B 80 CG OD1 ND2 REMARK 470 GLU B 111 CG CD OE1 OE2 REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 LYS B 148 CG CD CE NZ REMARK 470 TYR B 163 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 82 O HOH B 440 2.16 REMARK 500 O HOH A 398 O HOH A 414 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 310 O HOH A 310 2655 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 55 -117.44 50.81 REMARK 500 LYS B 55 -116.60 49.91 REMARK 500 ASP B 92 78.72 -112.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 416 DISTANCE = 5.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 27 OG1 REMARK 620 2 GDP A 201 O1B 82.7 REMARK 620 3 HOH A 349 O 108.9 89.8 REMARK 620 4 HOH A 383 O 104.7 172.6 88.6 REMARK 620 5 HOH A 384 O 86.1 97.8 164.0 82.1 REMARK 620 6 HOH A 406 O 170.1 104.0 78.7 68.6 85.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 27 OG1 REMARK 620 2 GDP B 201 O1B 83.8 REMARK 620 3 HOH B 361 O 171.2 103.7 REMARK 620 4 HOH B 399 O 92.4 89.9 83.1 REMARK 620 5 HOH B 415 O 104.4 90.2 80.4 163.1 REMARK 620 6 HOH B 429 O 98.8 176.2 73.9 92.7 86.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-ENHIA.01533.A RELATED DB: TARGETTRACK DBREF 4YLG A 1 173 UNP C4LXL1 C4LXL1_ENTHI 1 173 DBREF 4YLG B 1 173 UNP C4LXL1 C4LXL1_ENTHI 1 173 SEQRES 1 A 173 MET GLY SER TRP LEU SER LYS LEU LEU GLY LYS LYS GLU SEQRES 2 A 173 MET ARG ILE LEU MET VAL GLY LEU ASP ALA ALA GLY LYS SEQRES 3 A 173 THR SER ILE LEU TYR LYS LEU LYS LEU GLY GLU ILE VAL SEQRES 4 A 173 THR THR ILE PRO THR ILE GLY PHE ASN VAL GLU THR VAL SEQRES 5 A 173 GLU TYR LYS ASN ILE SER PHE THR VAL TRP ASP VAL GLY SEQRES 6 A 173 GLY GLN ASP LYS ILE ARG PRO LEU TRP ARG HIS TYR TYR SEQRES 7 A 173 GLN ASN THR GLN ALA ILE ILE PHE VAL VAL ASP SER ASN SEQRES 8 A 173 ASP ARG ASP ARG ILE GLY GLU ALA ARG GLU GLU LEU MET SEQRES 9 A 173 LYS MET LEU ASN GLU ASP GLU MET ARG ASN ALA ILE LEU SEQRES 10 A 173 LEU VAL PHE ALA ASN LYS HIS ASP LEU PRO GLN ALA MET SEQRES 11 A 173 SER ILE SER GLU VAL THR GLU LYS LEU GLY LEU GLN THR SEQRES 12 A 173 ILE LYS ASN ARG LYS TRP TYR CYS GLN THR SER CYS ALA SEQRES 13 A 173 THR ASN GLY ASP GLY LEU TYR GLU GLY LEU ASP TRP LEU SEQRES 14 A 173 ALA ASP ASN LEU SEQRES 1 B 173 MET GLY SER TRP LEU SER LYS LEU LEU GLY LYS LYS GLU SEQRES 2 B 173 MET ARG ILE LEU MET VAL GLY LEU ASP ALA ALA GLY LYS SEQRES 3 B 173 THR SER ILE LEU TYR LYS LEU LYS LEU GLY GLU ILE VAL SEQRES 4 B 173 THR THR ILE PRO THR ILE GLY PHE ASN VAL GLU THR VAL SEQRES 5 B 173 GLU TYR LYS ASN ILE SER PHE THR VAL TRP ASP VAL GLY SEQRES 6 B 173 GLY GLN ASP LYS ILE ARG PRO LEU TRP ARG HIS TYR TYR SEQRES 7 B 173 GLN ASN THR GLN ALA ILE ILE PHE VAL VAL ASP SER ASN SEQRES 8 B 173 ASP ARG ASP ARG ILE GLY GLU ALA ARG GLU GLU LEU MET SEQRES 9 B 173 LYS MET LEU ASN GLU ASP GLU MET ARG ASN ALA ILE LEU SEQRES 10 B 173 LEU VAL PHE ALA ASN LYS HIS ASP LEU PRO GLN ALA MET SEQRES 11 B 173 SER ILE SER GLU VAL THR GLU LYS LEU GLY LEU GLN THR SEQRES 12 B 173 ILE LYS ASN ARG LYS TRP TYR CYS GLN THR SER CYS ALA SEQRES 13 B 173 THR ASN GLY ASP GLY LEU TYR GLU GLY LEU ASP TRP LEU SEQRES 14 B 173 ALA ASP ASN LEU HET GDP A 201 28 HET MG A 202 1 HET GDP B 201 28 HET MG B 202 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *313(H2 O) HELIX 1 AA1 SER A 3 LEU A 9 1 7 HELIX 2 AA2 GLY A 25 LYS A 34 1 10 HELIX 3 AA3 LEU A 73 GLN A 79 5 7 HELIX 4 AA4 ASP A 92 ASP A 94 5 3 HELIX 5 AA5 ARG A 95 ASN A 108 1 14 HELIX 6 AA6 GLU A 109 ARG A 113 5 5 HELIX 7 AA7 SER A 131 LEU A 139 1 9 HELIX 8 AA8 GLY A 140 ILE A 144 5 5 HELIX 9 AA9 GLY A 161 ASN A 172 1 12 HELIX 10 AB1 TRP B 4 LEU B 9 1 6 HELIX 11 AB2 GLY B 25 LYS B 34 1 10 HELIX 12 AB3 ARG B 95 ASN B 108 1 14 HELIX 13 AB4 GLU B 109 ARG B 113 5 5 HELIX 14 AB5 SER B 131 LEU B 139 1 9 HELIX 15 AB6 GLY B 140 ILE B 144 5 5 HELIX 16 AB7 GLY B 161 ASN B 172 1 12 SHEET 1 AA114 TRP A 149 THR A 153 0 SHEET 2 AA114 ILE A 116 ASN A 122 1 N VAL A 119 O GLN A 152 SHEET 3 AA114 THR A 81 ASP A 89 1 N ILE A 84 O LEU A 118 SHEET 4 AA114 MET A 14 GLY A 20 1 N LEU A 17 O ILE A 85 SHEET 5 AA114 ILE A 57 ASP A 63 1 O THR A 60 N MET A 18 SHEET 6 AA114 PHE A 47 TYR A 54 -1 N GLU A 50 O VAL A 61 SHEET 7 AA114 ILE A 38 THR A 44 -1 N THR A 41 O VAL A 49 SHEET 8 AA114 ILE B 38 THR B 44 -1 O ILE B 38 N THR A 40 SHEET 9 AA114 PHE B 47 TYR B 54 -1 O VAL B 49 N THR B 41 SHEET 10 AA114 ILE B 57 ASP B 63 -1 O ILE B 57 N TYR B 54 SHEET 11 AA114 MET B 14 GLY B 20 1 N ILE B 16 O SER B 58 SHEET 12 AA114 THR B 81 ASP B 89 1 O ILE B 85 N LEU B 17 SHEET 13 AA114 ILE B 116 ASN B 122 1 O LEU B 118 N ILE B 84 SHEET 14 AA114 TRP B 149 THR B 153 1 O TYR B 150 N VAL B 119 LINK OG1 THR A 27 MG MG A 202 1555 1555 2.11 LINK O1B GDP A 201 MG MG A 202 1555 1555 1.95 LINK MG MG A 202 O HOH A 349 1555 1555 2.25 LINK MG MG A 202 O HOH A 383 1555 1555 2.07 LINK MG MG A 202 O HOH A 384 1555 1555 2.18 LINK MG MG A 202 O HOH A 406 1555 1555 2.64 LINK OG1 THR B 27 MG MG B 202 1555 1555 2.20 LINK O1B GDP B 201 MG MG B 202 1555 1555 2.03 LINK MG MG B 202 O HOH B 361 1555 1555 2.55 LINK MG MG B 202 O HOH B 399 1555 1555 2.23 LINK MG MG B 202 O HOH B 415 1555 1555 1.97 LINK MG MG B 202 O HOH B 429 1555 1555 2.32 SITE 1 AC1 21 ALA A 23 ALA A 24 GLY A 25 LYS A 26 SITE 2 AC1 21 THR A 27 SER A 28 ASN A 122 LYS A 123 SITE 3 AC1 21 ASP A 125 CYS A 155 ALA A 156 MG A 202 SITE 4 AC1 21 HOH A 349 HOH A 362 HOH A 382 HOH A 384 SITE 5 AC1 21 HOH A 406 HOH A 442 HOH A 445 GLY B 46 SITE 6 AC1 21 ASN B 48 SITE 1 AC2 6 THR A 27 GDP A 201 HOH A 349 HOH A 383 SITE 2 AC2 6 HOH A 384 HOH A 406 SITE 1 AC3 23 ILE A 45 GLY A 46 ASN A 48 ALA B 23 SITE 2 AC3 23 ALA B 24 GLY B 25 LYS B 26 THR B 27 SITE 3 AC3 23 SER B 28 ASN B 122 LYS B 123 ASP B 125 SITE 4 AC3 23 LEU B 126 CYS B 155 ALA B 156 THR B 157 SITE 5 AC3 23 MG B 202 HOH B 361 HOH B 387 HOH B 399 SITE 6 AC3 23 HOH B 415 HOH B 443 HOH B 454 SITE 1 AC4 6 THR B 27 GDP B 201 HOH B 361 HOH B 399 SITE 2 AC4 6 HOH B 415 HOH B 429 CRYST1 123.540 40.660 78.950 90.00 97.45 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008095 0.000000 0.001058 0.00000 SCALE2 0.000000 0.024594 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012774 0.00000