HEADER LIGASE 05-MAR-15 4YLR TITLE TUBULIN GLUTAMYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUBULIN POLYGLUTAMYLASE TTLL7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 36-518; COMPND 5 SYNONYM: TESTIS DEVELOPMENT PROTEIN NYD-SP30,TUBULIN--TYROSINE COMPND 6 LIGASE-LIKE PROTEIN 7; COMPND 7 EC: 6.-.-.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTLL7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENZYME, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR C.P.GARNHAM,A.VEMU,E.M.WILSON-KUBALEK,I.YU,A.SZYK,G.C.LANDER, AUTHOR 2 R.A.MILLIGAN,A.ROLL-MECAK REVDAT 4 28-FEB-24 4YLR 1 REMARK REVDAT 3 25-DEC-19 4YLR 1 REMARK REVDAT 2 20-SEP-17 4YLR 1 SOURCE REMARK REVDAT 1 17-JUN-15 4YLR 0 JRNL AUTH C.P.GARNHAM,A.VEMU,E.M.WILSON-KUBALEK,I.YU,A.SZYK, JRNL AUTH 2 G.C.LANDER,R.A.MILLIGAN,A.ROLL-MECAK JRNL TITL MULTIVALENT MICROTUBULE RECOGNITION BY TUBULIN TYROSINE JRNL TITL 2 LIGASE-LIKE FAMILY GLUTAMYLASES. JRNL REF CELL V. 161 1112 2015 JRNL REFN ISSN 1097-4172 JRNL PMID 25959773 JRNL DOI 10.1016/J.CELL.2015.04.003 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 19556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2953 - 6.1414 0.92 1324 132 0.2208 0.2575 REMARK 3 2 6.1414 - 4.8764 0.95 1289 146 0.2264 0.2730 REMARK 3 3 4.8764 - 4.2604 0.95 1278 144 0.1924 0.2350 REMARK 3 4 4.2604 - 3.8711 0.96 1291 142 0.2088 0.2508 REMARK 3 5 3.8711 - 3.5938 0.96 1275 134 0.2112 0.2533 REMARK 3 6 3.5938 - 3.3820 0.96 1293 125 0.2364 0.2591 REMARK 3 7 3.3820 - 3.2126 0.97 1277 147 0.2200 0.2801 REMARK 3 8 3.2126 - 3.0728 0.97 1263 161 0.2280 0.2885 REMARK 3 9 3.0728 - 2.9545 0.97 1261 150 0.2382 0.2869 REMARK 3 10 2.9545 - 2.8526 0.97 1269 157 0.2411 0.3134 REMARK 3 11 2.8526 - 2.7634 0.97 1251 144 0.2525 0.2979 REMARK 3 12 2.7634 - 2.6844 0.94 1243 122 0.2499 0.3280 REMARK 3 13 2.6844 - 2.6138 0.89 1153 134 0.2572 0.3130 REMARK 3 14 2.6138 - 2.5500 0.85 1109 142 0.2649 0.3249 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2653 REMARK 3 ANGLE : 0.563 3609 REMARK 3 CHIRALITY : 0.021 407 REMARK 3 PLANARITY : 0.002 456 REMARK 3 DIHEDRAL : 13.281 933 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.3935 -17.0813 -38.6734 REMARK 3 T TENSOR REMARK 3 T11: 0.4509 T22: 0.8590 REMARK 3 T33: 0.4735 T12: -0.0027 REMARK 3 T13: -0.0861 T23: -0.1436 REMARK 3 L TENSOR REMARK 3 L11: 4.0218 L22: 4.6745 REMARK 3 L33: 5.4327 L12: 2.2164 REMARK 3 L13: -4.6208 L23: -2.1548 REMARK 3 S TENSOR REMARK 3 S11: -0.1934 S12: 1.3285 S13: -0.2123 REMARK 3 S21: -0.2463 S22: 0.3568 S23: 0.2310 REMARK 3 S31: 0.1053 S32: -1.2070 S33: -0.1296 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8303 -19.8912 -27.6651 REMARK 3 T TENSOR REMARK 3 T11: 0.3436 T22: 0.5313 REMARK 3 T33: 0.4544 T12: -0.0746 REMARK 3 T13: 0.0083 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 5.0566 L22: 2.1164 REMARK 3 L33: 5.0465 L12: -0.8766 REMARK 3 L13: 1.0855 L23: 0.5865 REMARK 3 S TENSOR REMARK 3 S11: 0.0805 S12: 0.1721 S13: -0.5338 REMARK 3 S21: -0.0606 S22: 0.0250 S23: 0.0361 REMARK 3 S31: 0.3494 S32: 0.1331 S33: -0.1205 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8280 -30.4268 1.8682 REMARK 3 T TENSOR REMARK 3 T11: 0.9015 T22: 1.1228 REMARK 3 T33: 0.8694 T12: -0.0717 REMARK 3 T13: 0.0619 T23: 0.3685 REMARK 3 L TENSOR REMARK 3 L11: 3.2760 L22: 4.7000 REMARK 3 L33: 0.4115 L12: -2.1260 REMARK 3 L13: 0.7880 L23: -1.3130 REMARK 3 S TENSOR REMARK 3 S11: -0.0580 S12: -0.6858 S13: -0.7188 REMARK 3 S21: 0.5428 S22: -0.8176 S23: -0.7590 REMARK 3 S31: 0.7543 S32: -0.3199 S33: 0.6851 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 169 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.3647 -22.7316 -2.6895 REMARK 3 T TENSOR REMARK 3 T11: 0.4982 T22: 0.9262 REMARK 3 T33: 0.5971 T12: -0.0367 REMARK 3 T13: -0.0312 T23: 0.0832 REMARK 3 L TENSOR REMARK 3 L11: 5.6075 L22: 7.4885 REMARK 3 L33: 2.7646 L12: -4.6913 REMARK 3 L13: -2.1783 L23: 1.6851 REMARK 3 S TENSOR REMARK 3 S11: -0.1061 S12: -0.8581 S13: -0.9014 REMARK 3 S21: 0.7239 S22: -0.0739 S23: 1.1230 REMARK 3 S31: 0.2963 S32: -0.3741 S33: 0.1509 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.3851 -11.3572 -17.1662 REMARK 3 T TENSOR REMARK 3 T11: 0.3809 T22: 0.6324 REMARK 3 T33: 0.3504 T12: -0.0224 REMARK 3 T13: -0.0354 T23: -0.1064 REMARK 3 L TENSOR REMARK 3 L11: 3.9468 L22: 1.6735 REMARK 3 L33: 6.3261 L12: 0.3871 REMARK 3 L13: -3.6374 L23: 0.0563 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: -0.5338 S13: 0.1163 REMARK 3 S21: 0.1872 S22: -0.1522 S23: 0.1795 REMARK 3 S31: -0.0276 S32: -0.2929 S33: 0.1906 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 269 THROUGH 352 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2637 -11.5677 -18.3706 REMARK 3 T TENSOR REMARK 3 T11: 0.4260 T22: 0.5306 REMARK 3 T33: 0.4175 T12: -0.0549 REMARK 3 T13: -0.0202 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 6.3354 L22: 1.3617 REMARK 3 L33: 4.3096 L12: -2.6772 REMARK 3 L13: -2.9882 L23: 1.8249 REMARK 3 S TENSOR REMARK 3 S11: 0.0416 S12: -0.2728 S13: 0.0297 REMARK 3 S21: 0.0338 S22: -0.0126 S23: -0.0654 REMARK 3 S31: -0.1285 S32: -0.1488 S33: -0.0157 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 353 THROUGH 382 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.9158 -9.2977 -30.5398 REMARK 3 T TENSOR REMARK 3 T11: 0.3644 T22: 0.5303 REMARK 3 T33: 0.3178 T12: -0.0075 REMARK 3 T13: -0.0394 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 5.2275 L22: 8.9578 REMARK 3 L33: 4.1575 L12: -2.4239 REMARK 3 L13: 2.2386 L23: 2.2719 REMARK 3 S TENSOR REMARK 3 S11: -0.2045 S12: 0.5667 S13: -0.1141 REMARK 3 S21: 0.2546 S22: 0.0729 S23: -0.1322 REMARK 3 S31: -0.0197 S32: -0.7512 S33: 0.0458 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 451 THROUGH 468 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6107 -2.1904 -20.8763 REMARK 3 T TENSOR REMARK 3 T11: 0.5457 T22: 0.5819 REMARK 3 T33: 0.5922 T12: -0.1589 REMARK 3 T13: 0.0926 T23: -0.0670 REMARK 3 L TENSOR REMARK 3 L11: 9.4968 L22: 3.2415 REMARK 3 L33: 8.5627 L12: 5.0679 REMARK 3 L13: 3.1757 L23: 3.5816 REMARK 3 S TENSOR REMARK 3 S11: 0.2856 S12: -0.8633 S13: 1.5189 REMARK 3 S21: -0.1313 S22: -0.1476 S23: -0.1396 REMARK 3 S31: -1.0597 S32: 0.2931 S33: 0.0419 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 469 THROUGH 484 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8762 -17.5241 -17.5393 REMARK 3 T TENSOR REMARK 3 T11: 0.3117 T22: 0.8221 REMARK 3 T33: 0.5519 T12: -0.0595 REMARK 3 T13: -0.0258 T23: 0.1302 REMARK 3 L TENSOR REMARK 3 L11: 8.8450 L22: 9.7407 REMARK 3 L33: 9.7137 L12: -4.1209 REMARK 3 L13: -0.5713 L23: 2.1252 REMARK 3 S TENSOR REMARK 3 S11: 0.2296 S12: -1.4759 S13: 0.0935 REMARK 3 S21: 0.3563 S22: 0.0652 S23: -1.6056 REMARK 3 S31: 0.0864 S32: 0.6342 S33: -0.2909 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YLR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207597. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19556 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.48200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, MAGNESIUM ACETATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.92900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.92900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.27400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.88100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.27400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.88100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.92900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.27400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.88100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.92900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.27400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.88100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 32 REMARK 465 SER A 33 REMARK 465 PHE A 34 REMARK 465 THR A 35 REMARK 465 LYS A 36 REMARK 465 LYS A 37 REMARK 465 LYS A 38 REMARK 465 GLY A 39 REMARK 465 ALA A 162 REMARK 465 ASN A 163 REMARK 465 GLY A 164 REMARK 465 ALA A 165 REMARK 465 MET A 166 REMARK 465 GLY A 167 REMARK 465 HIS A 168 REMARK 465 GLY A 169 REMARK 465 GLY A 176 REMARK 465 ASP A 177 REMARK 465 LYS A 178 REMARK 465 LEU A 179 REMARK 465 PRO A 180 REMARK 465 PRO A 236 REMARK 465 ASN A 237 REMARK 465 GLU A 238 REMARK 465 SER A 239 REMARK 465 ASN A 240 REMARK 465 LEU A 241 REMARK 465 THR A 242 REMARK 465 GLN A 243 REMARK 465 LEU A 244 REMARK 465 TYR A 245 REMARK 465 MET A 246 REMARK 465 HIS A 247 REMARK 465 LEU A 248 REMARK 465 THR A 249 REMARK 465 ASN A 250 REMARK 465 TYR A 251 REMARK 465 SER A 252 REMARK 465 VAL A 253 REMARK 465 ASN A 254 REMARK 465 LYS A 255 REMARK 465 HIS A 256 REMARK 465 ASN A 257 REMARK 465 GLU A 258 REMARK 465 HIS A 259 REMARK 465 PHE A 260 REMARK 465 GLU A 261 REMARK 465 ARG A 262 REMARK 465 ASP A 263 REMARK 465 GLU A 264 REMARK 465 THR A 265 REMARK 465 GLU A 266 REMARK 465 ASN A 267 REMARK 465 LYS A 268 REMARK 465 SER A 383 REMARK 465 ASP A 384 REMARK 465 LYS A 385 REMARK 465 ARG A 386 REMARK 465 ARG A 387 REMARK 465 ASN A 388 REMARK 465 LEU A 389 REMARK 465 ALA A 390 REMARK 465 LYS A 391 REMARK 465 GLN A 392 REMARK 465 LYS A 393 REMARK 465 ALA A 394 REMARK 465 GLU A 395 REMARK 465 ALA A 396 REMARK 465 GLN A 397 REMARK 465 ARG A 398 REMARK 465 ARG A 399 REMARK 465 LEU A 400 REMARK 465 TYR A 401 REMARK 465 GLY A 402 REMARK 465 GLN A 403 REMARK 465 ASN A 404 REMARK 465 SER A 405 REMARK 465 ILE A 406 REMARK 465 LYS A 407 REMARK 465 ARG A 408 REMARK 465 LEU A 409 REMARK 465 LEU A 410 REMARK 465 PRO A 411 REMARK 465 GLY A 412 REMARK 465 SER A 413 REMARK 465 SER A 414 REMARK 465 ASP A 415 REMARK 465 TRP A 416 REMARK 465 GLU A 417 REMARK 465 GLN A 418 REMARK 465 GLN A 419 REMARK 465 ARG A 420 REMARK 465 HIS A 421 REMARK 465 GLN A 422 REMARK 465 LEU A 423 REMARK 465 GLU A 424 REMARK 465 ARG A 425 REMARK 465 ARG A 426 REMARK 465 LYS A 427 REMARK 465 GLU A 428 REMARK 465 GLU A 429 REMARK 465 LEU A 430 REMARK 465 LYS A 431 REMARK 465 GLU A 432 REMARK 465 ARG A 433 REMARK 465 LEU A 434 REMARK 465 ALA A 435 REMARK 465 GLN A 436 REMARK 465 VAL A 437 REMARK 465 ARG A 438 REMARK 465 LYS A 439 REMARK 465 GLN A 440 REMARK 465 ILE A 441 REMARK 465 SER A 442 REMARK 465 ARG A 443 REMARK 465 GLU A 444 REMARK 465 GLU A 445 REMARK 465 HIS A 446 REMARK 465 GLU A 447 REMARK 465 ASN A 448 REMARK 465 ARG A 449 REMARK 465 HIS A 450 REMARK 465 ALA A 485 REMARK 465 ALA A 486 REMARK 465 SER A 487 REMARK 465 PHE A 488 REMARK 465 GLN A 489 REMARK 465 ARG A 490 REMARK 465 GLU A 491 REMARK 465 LEU A 492 REMARK 465 ASN A 493 REMARK 465 ASN A 494 REMARK 465 PRO A 495 REMARK 465 LEU A 496 REMARK 465 LYS A 497 REMARK 465 ARG A 498 REMARK 465 MET A 499 REMARK 465 LYS A 500 REMARK 465 GLU A 501 REMARK 465 GLU A 502 REMARK 465 ASP A 503 REMARK 465 ILE A 504 REMARK 465 LEU A 505 REMARK 465 ASP A 506 REMARK 465 LEU A 507 REMARK 465 LEU A 508 REMARK 465 GLU A 509 REMARK 465 GLN A 510 REMARK 465 CYS A 511 REMARK 465 GLU A 512 REMARK 465 ILE A 513 REMARK 465 ASP A 514 REMARK 465 ASP A 515 REMARK 465 GLU A 516 REMARK 465 LYS A 517 REMARK 465 LEU A 518 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 45 CG1 CG2 REMARK 470 VAL A 81 CG1 CG2 REMARK 470 GLU A 84 CG CD OE1 OE2 REMARK 470 LYS A 85 CE NZ REMARK 470 SER A 87 OG REMARK 470 ILE A 104 CG1 CG2 CD1 REMARK 470 ARG A 112 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 TYR A 138 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR A 139 OG1 CG2 REMARK 470 VAL A 145 CG1 CG2 REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 LEU A 148 CG CD1 CD2 REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 ARG A 152 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 GLN A 154 CG CD OE1 NE2 REMARK 470 LYS A 155 CD CE NZ REMARK 470 PRO A 161 CG CD REMARK 470 SER A 171 OG REMARK 470 ILE A 173 CG1 CG2 CD1 REMARK 470 ARG A 174 CZ NH1 NH2 REMARK 470 ASN A 175 CG OD1 ND2 REMARK 470 GLN A 182 CG CD OE1 NE2 REMARK 470 ASP A 183 CG OD1 OD2 REMARK 470 HIS A 184 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 185 CD1 CD2 REMARK 470 LYS A 193 CG CD CE NZ REMARK 470 MET A 197 CE REMARK 470 GLU A 198 CG CD OE1 OE2 REMARK 470 LYS A 217 CD CE NZ REMARK 470 ARG A 227 CG CD NE CZ NH1 NH2 REMARK 470 THR A 230 OG1 CG2 REMARK 470 GLU A 231 CG CD OE1 OE2 REMARK 470 LYS A 232 CE NZ REMARK 470 ILE A 234 CG1 CG2 CD1 REMARK 470 ARG A 272 CD NE CZ NH1 NH2 REMARK 470 LYS A 275 CD CE NZ REMARK 470 SER A 325 OG REMARK 470 ARG A 341 CG CD NE CZ NH1 NH2 REMARK 470 SER A 355 OG REMARK 470 ILE A 362 CD1 REMARK 470 MET A 451 CG SD CE REMARK 470 ARG A 455 CZ NH1 NH2 REMARK 470 GLU A 461 CG CD OE1 OE2 REMARK 470 LYS A 463 CG CD CE NZ REMARK 470 GLU A 467 CG CD OE1 OE2 REMARK 470 LYS A 468 CD CE NZ REMARK 470 GLN A 478 CG CD OE1 NE2 REMARK 470 LEU A 481 CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 96 34.43 -86.43 REMARK 500 TYR A 125 79.40 -113.76 REMARK 500 PRO A 135 48.88 -92.80 REMARK 500 GLU A 137 42.32 -102.56 REMARK 500 LYS A 193 77.08 -114.95 REMARK 500 HIS A 222 45.90 -82.03 REMARK 500 ASP A 287 99.52 -68.94 REMARK 500 ARG A 381 -152.17 -119.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YLS RELATED DB: PDB DBREF 4YLR A 36 518 UNP Q6ZT98 TTLL7_HUMAN 36 518 SEQADV 4YLR GLY A 32 UNP Q6ZT98 EXPRESSION TAG SEQADV 4YLR SER A 33 UNP Q6ZT98 EXPRESSION TAG SEQADV 4YLR PHE A 34 UNP Q6ZT98 EXPRESSION TAG SEQADV 4YLR THR A 35 UNP Q6ZT98 EXPRESSION TAG SEQADV 4YLR GLN A 349 UNP Q6ZT98 GLU 349 ENGINEERED MUTATION SEQRES 1 A 487 GLY SER PHE THR LYS LYS LYS GLY THR ILE THR ALA ASN SEQRES 2 A 487 VAL ALA GLY THR LYS PHE GLU ILE VAL ARG LEU VAL ILE SEQRES 3 A 487 ASP GLU MET GLY PHE MET LYS THR PRO ASP GLU ASP GLU SEQRES 4 A 487 THR SER ASN LEU ILE TRP CYS ASP SER ALA VAL GLN GLN SEQRES 5 A 487 GLU LYS ILE SER GLU LEU GLN ASN TYR GLN ARG ILE ASN SEQRES 6 A 487 HIS PHE PRO GLY MET GLY GLU ILE CYS ARG LYS ASP PHE SEQRES 7 A 487 LEU ALA ARG ASN MET THR LYS MET ILE LYS SER ARG PRO SEQRES 8 A 487 LEU ASP TYR THR PHE VAL PRO ARG THR TRP ILE PHE PRO SEQRES 9 A 487 ALA GLU TYR THR GLN PHE GLN ASN TYR VAL LYS GLU LEU SEQRES 10 A 487 LYS LYS LYS ARG LYS GLN LYS THR PHE ILE VAL LYS PRO SEQRES 11 A 487 ALA ASN GLY ALA MET GLY HIS GLY ILE SER LEU ILE ARG SEQRES 12 A 487 ASN GLY ASP LYS LEU PRO SER GLN ASP HIS LEU ILE VAL SEQRES 13 A 487 GLN GLU TYR ILE GLU LYS PRO PHE LEU MET GLU GLY TYR SEQRES 14 A 487 LYS PHE ASP LEU ARG ILE TYR ILE LEU VAL THR SER CYS SEQRES 15 A 487 ASP PRO LEU LYS ILE PHE LEU TYR HIS ASP GLY LEU VAL SEQRES 16 A 487 ARG MET GLY THR GLU LYS TYR ILE PRO PRO ASN GLU SER SEQRES 17 A 487 ASN LEU THR GLN LEU TYR MET HIS LEU THR ASN TYR SER SEQRES 18 A 487 VAL ASN LYS HIS ASN GLU HIS PHE GLU ARG ASP GLU THR SEQRES 19 A 487 GLU ASN LYS GLY SER LYS ARG SER ILE LYS TRP PHE THR SEQRES 20 A 487 GLU PHE LEU GLN ALA ASN GLN HIS ASP VAL ALA LYS PHE SEQRES 21 A 487 TRP SER ASP ILE SER GLU LEU VAL VAL LYS THR LEU ILE SEQRES 22 A 487 VAL ALA GLU PRO HIS VAL LEU HIS ALA TYR ARG MET CYS SEQRES 23 A 487 ARG PRO GLY GLN PRO PRO GLY SER GLU SER VAL CYS PHE SEQRES 24 A 487 GLU VAL LEU GLY PHE ASP ILE LEU LEU ASP ARG LYS LEU SEQRES 25 A 487 LYS PRO TRP LEU LEU GLN ILE ASN ARG ALA PRO SER PHE SEQRES 26 A 487 GLY THR ASP GLN LYS ILE ASP TYR ASP VAL LYS ARG GLY SEQRES 27 A 487 VAL LEU LEU ASN ALA LEU LYS LEU LEU ASN ILE ARG THR SEQRES 28 A 487 SER ASP LYS ARG ARG ASN LEU ALA LYS GLN LYS ALA GLU SEQRES 29 A 487 ALA GLN ARG ARG LEU TYR GLY GLN ASN SER ILE LYS ARG SEQRES 30 A 487 LEU LEU PRO GLY SER SER ASP TRP GLU GLN GLN ARG HIS SEQRES 31 A 487 GLN LEU GLU ARG ARG LYS GLU GLU LEU LYS GLU ARG LEU SEQRES 32 A 487 ALA GLN VAL ARG LYS GLN ILE SER ARG GLU GLU HIS GLU SEQRES 33 A 487 ASN ARG HIS MET GLY ASN TYR ARG ARG ILE TYR PRO PRO SEQRES 34 A 487 GLU ASP LYS ALA LEU LEU GLU LYS TYR GLU ASN LEU LEU SEQRES 35 A 487 ALA VAL ALA PHE GLN THR PHE LEU SER GLY ARG ALA ALA SEQRES 36 A 487 SER PHE GLN ARG GLU LEU ASN ASN PRO LEU LYS ARG MET SEQRES 37 A 487 LYS GLU GLU ASP ILE LEU ASP LEU LEU GLU GLN CYS GLU SEQRES 38 A 487 ILE ASP ASP GLU LYS LEU HET ADP A 601 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 HOH *15(H2 O) HELIX 1 AA1 PHE A 50 GLY A 61 1 12 HELIX 2 AA2 GLN A 82 GLU A 88 1 7 HELIX 3 AA3 MET A 101 ARG A 106 1 6 HELIX 4 AA4 ARG A 106 LYS A 119 1 14 HELIX 5 AA5 GLU A 137 LYS A 151 1 15 HELIX 6 AA6 ILE A 274 ASN A 284 1 11 HELIX 7 AA7 ASP A 287 ARG A 318 1 32 HELIX 8 AA8 GLN A 360 ASN A 379 1 20 HELIX 9 AA9 ASP A 462 ARG A 484 1 23 SHEET 1 AA1 4 MET A 63 LYS A 64 0 SHEET 2 AA1 4 THR A 42 GLY A 47 1 N ALA A 43 O MET A 63 SHEET 3 AA1 4 LEU A 74 CYS A 77 1 O LEU A 74 N ASN A 44 SHEET 4 AA1 4 ARG A 94 ILE A 95 1 O ARG A 94 N ILE A 75 SHEET 1 AA2 4 THR A 131 ILE A 133 0 SHEET 2 AA2 4 ILE A 186 GLU A 189 -1 O VAL A 187 N TRP A 132 SHEET 3 AA2 4 PHE A 157 LYS A 160 -1 N ILE A 158 O GLN A 188 SHEET 4 AA2 4 SER A 171 ILE A 173 -1 O SER A 171 N VAL A 159 SHEET 1 AA3 5 LYS A 271 SER A 273 0 SHEET 2 AA3 5 LYS A 217 MET A 228 -1 N VAL A 226 O ARG A 272 SHEET 3 AA3 5 PHE A 202 SER A 212 -1 N LEU A 209 O PHE A 219 SHEET 4 AA3 5 GLU A 331 LEU A 339 -1 O ILE A 337 N LEU A 204 SHEET 5 AA3 5 PRO A 345 ASN A 351 -1 O TRP A 346 N LEU A 338 SHEET 1 AA4 3 LYS A 271 SER A 273 0 SHEET 2 AA4 3 LYS A 217 MET A 228 -1 N VAL A 226 O ARG A 272 SHEET 3 AA4 3 TYR A 454 TYR A 458 -1 O ARG A 455 N LEU A 220 CISPEP 1 PHE A 134 PRO A 135 0 -0.33 CISPEP 2 ASP A 214 PRO A 215 0 -2.20 CISPEP 3 TYR A 458 PRO A 459 0 -0.80 SITE 1 AC1 10 ILE A 158 LYS A 160 ILE A 170 GLN A 188 SITE 2 AC1 10 GLU A 189 TYR A 190 ILE A 191 LYS A 201 SITE 3 AC1 10 ASP A 203 LEU A 338 CRYST1 78.548 121.762 129.858 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012731 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008213 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007701 0.00000