HEADER SIGNALING PROTEIN 06-MAR-15 4YMA TITLE STRUCTURE OF THE LIGAND-BINDING DOMAIN OF GLUA2 IN COMPLEX WITH THE TITLE 2 ANTAGONIST CNG10109 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR 2; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: GLUR-2,AMPA-SELECTIVE GLUTAMATE RECEPTOR 2,GLUR-B,GLUR-K2, COMPND 5 GLUTAMATE RECEPTOR IONOTROPIC,AMPA 2,GLUA2,GLUR-2,AMPA-SELECTIVE COMPND 6 GLUTAMATE RECEPTOR 2,GLUR-B,GLUR-K2,GLUTAMATE RECEPTOR IONOTROPIC, COMPND 7 AMPA 2,GLUA2; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THE PROTEIN COMPRISES SEGMENT S1 RESIDUES 413-527, A COMPND 10 GT LINKER AND S2 RESIDUES 653-797. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: GRIA2, GLUR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ORIGAMI B; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B(+) KEYWDS IONOTROPIC GLUTAMATE RECEPTOR, AMPA RECEPTOR GLUA2, LIGAND-BINDING KEYWDS 2 DOMAIN, ANTAGONIST, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.MOLLER,D.TAPKEN,J.S.KASTRUP,K.FRYDENVANG REVDAT 5 10-JAN-24 4YMA 1 REMARK REVDAT 4 07-MAR-18 4YMA 1 SOURCE REVDAT 3 09-AUG-17 4YMA 1 JRNL REMARK REVDAT 2 26-AUG-15 4YMA 1 JRNL REVDAT 1 05-AUG-15 4YMA 0 JRNL AUTH N.KROGSGAARD-LARSEN,M.STORGAARD,C.MOLLER,C.S.DEMMER, JRNL AUTH 2 J.HANSEN,L.HAN,R.N.MONRAD,B.NIELSEN,D.TAPKEN,D.S.PICKERING, JRNL AUTH 3 J.S.KASTRUP,K.FRYDENVANG,L.BUNCH JRNL TITL STRUCTURE-ACTIVITY RELATIONSHIP STUDY OF IONOTROPIC JRNL TITL 2 GLUTAMATE RECEPTOR ANTAGONIST JRNL TITL 3 (2S,3R)-3-(3-CARBOXYPHENYL)PYRROLIDINE-2-CARBOXYLIC ACID. JRNL REF J.MED.CHEM. V. 58 6131 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 26200741 JRNL DOI 10.1021/ACS.JMEDCHEM.5B00750 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.KRINTEL,K.FRYDENVANG,A.CERAVALLS DE RABASSA,A.M.KAERN, REMARK 1 AUTH 2 M.GAJHEDE,D.S.PICKERING,J.S.KASTRUP REMARK 1 TITL L-ASP IS A USEFUL TOOL IN THE PURIFICATION OF THE IONOTROPIC REMARK 1 TITL 2 GLUTAMATE RECEPTOR A2 LIGAND-BINDING DOMAIN. REMARK 1 REF FEBS J. V. 281 2422 2014 REMARK 1 REFN ISSN 1742-4658 REMARK 1 PMID 24673938 REMARK 1 DOI 10.1111/FEBS.12795 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 45841 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2314 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.3954 - 4.8690 1.00 2606 166 0.1512 0.1925 REMARK 3 2 4.8690 - 3.8660 1.00 2591 150 0.1311 0.1723 REMARK 3 3 3.8660 - 3.3777 1.00 2584 129 0.1564 0.2094 REMARK 3 4 3.3777 - 3.0691 1.00 2595 118 0.1638 0.2286 REMARK 3 5 3.0691 - 2.8492 1.00 2547 135 0.1767 0.2316 REMARK 3 6 2.8492 - 2.6813 1.00 2552 151 0.1805 0.2360 REMARK 3 7 2.6813 - 2.5470 1.00 2548 131 0.1721 0.2224 REMARK 3 8 2.5470 - 2.4362 1.00 2582 112 0.1762 0.2257 REMARK 3 9 2.4362 - 2.3424 1.00 2561 124 0.1853 0.3061 REMARK 3 10 2.3424 - 2.2616 1.00 2564 139 0.1792 0.2637 REMARK 3 11 2.2616 - 2.1909 1.00 2572 139 0.1985 0.3028 REMARK 3 12 2.1909 - 2.1283 1.00 2497 142 0.1900 0.2383 REMARK 3 13 2.1283 - 2.0722 1.00 2601 124 0.1799 0.2412 REMARK 3 14 2.0722 - 2.0217 1.00 2504 137 0.1873 0.2792 REMARK 3 15 2.0217 - 1.9757 1.00 2546 141 0.1982 0.2320 REMARK 3 16 1.9757 - 1.9337 1.00 2540 131 0.2261 0.2743 REMARK 3 17 1.9337 - 1.8950 1.00 2537 145 0.2510 0.2950 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4274 REMARK 3 ANGLE : 1.000 5757 REMARK 3 CHIRALITY : 0.071 630 REMARK 3 PLANARITY : 0.005 716 REMARK 3 DIHEDRAL : 12.481 1604 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4664 -41.0949 -27.5670 REMARK 3 T TENSOR REMARK 3 T11: 0.3261 T22: 0.1850 REMARK 3 T33: 0.2096 T12: -0.0729 REMARK 3 T13: -0.0233 T23: -0.0487 REMARK 3 L TENSOR REMARK 3 L11: 3.8514 L22: 2.6391 REMARK 3 L33: 1.6306 L12: 1.5252 REMARK 3 L13: -0.0674 L23: 0.0279 REMARK 3 S TENSOR REMARK 3 S11: 0.1440 S12: -0.0416 S13: -0.3379 REMARK 3 S21: 0.2646 S22: -0.1901 S23: -0.0285 REMARK 3 S31: 0.6704 S32: -0.2409 S33: 0.0478 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2484 -26.4885 -35.0241 REMARK 3 T TENSOR REMARK 3 T11: 0.1429 T22: 0.2525 REMARK 3 T33: 0.1615 T12: 0.0063 REMARK 3 T13: -0.0232 T23: -0.0447 REMARK 3 L TENSOR REMARK 3 L11: 2.0332 L22: 1.0988 REMARK 3 L33: 2.2881 L12: -0.2202 REMARK 3 L13: -0.1434 L23: 1.1002 REMARK 3 S TENSOR REMARK 3 S11: 0.0916 S12: 0.3898 S13: -0.0372 REMARK 3 S21: -0.0294 S22: -0.1912 S23: 0.1656 REMARK 3 S31: 0.0522 S32: -0.3329 S33: 0.0509 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5776 -21.6059 -40.3433 REMARK 3 T TENSOR REMARK 3 T11: 0.1569 T22: 0.1831 REMARK 3 T33: 0.2383 T12: -0.0312 REMARK 3 T13: 0.0180 T23: -0.0574 REMARK 3 L TENSOR REMARK 3 L11: 2.1707 L22: 2.2738 REMARK 3 L33: 4.0551 L12: -0.8488 REMARK 3 L13: -1.0107 L23: 0.4563 REMARK 3 S TENSOR REMARK 3 S11: 0.2379 S12: -0.1028 S13: 0.1677 REMARK 3 S21: -0.2608 S22: 0.1901 S23: -0.0729 REMARK 3 S31: -0.3576 S32: 0.4467 S33: -0.3316 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8850 -25.4406 -22.3322 REMARK 3 T TENSOR REMARK 3 T11: 0.1445 T22: 0.2459 REMARK 3 T33: 0.2071 T12: -0.0444 REMARK 3 T13: 0.0354 T23: -0.1074 REMARK 3 L TENSOR REMARK 3 L11: 2.5999 L22: 1.4602 REMARK 3 L33: 1.8686 L12: 0.6515 REMARK 3 L13: 0.4610 L23: -0.0562 REMARK 3 S TENSOR REMARK 3 S11: 0.1486 S12: -0.0195 S13: 0.0137 REMARK 3 S21: 0.1854 S22: -0.2483 S23: 0.2859 REMARK 3 S31: 0.0988 S32: -0.7008 S33: -0.0053 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 244 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1364 -34.4760 -19.9257 REMARK 3 T TENSOR REMARK 3 T11: 0.2874 T22: 0.1893 REMARK 3 T33: 0.1933 T12: 0.0540 REMARK 3 T13: -0.0714 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 3.5587 L22: 3.0215 REMARK 3 L33: 2.8703 L12: -0.0075 REMARK 3 L13: -0.3603 L23: 0.5970 REMARK 3 S TENSOR REMARK 3 S11: 0.1844 S12: -0.2846 S13: -0.4872 REMARK 3 S21: 0.1105 S22: -0.1574 S23: -0.1248 REMARK 3 S31: 0.6902 S32: 0.5782 S33: 0.1127 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1096 4.9402 -19.0483 REMARK 3 T TENSOR REMARK 3 T11: 0.2945 T22: 0.1641 REMARK 3 T33: 0.1958 T12: 0.1026 REMARK 3 T13: 0.0359 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 3.2334 L22: 3.2865 REMARK 3 L33: 2.3160 L12: -1.6123 REMARK 3 L13: 0.3250 L23: -0.5580 REMARK 3 S TENSOR REMARK 3 S11: 0.1346 S12: 0.0930 S13: 0.1963 REMARK 3 S21: -0.3248 S22: -0.1777 S23: -0.0948 REMARK 3 S31: -0.5709 S32: -0.1662 S33: 0.0608 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 48 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0257 -9.7698 -11.5230 REMARK 3 T TENSOR REMARK 3 T11: 0.1552 T22: 0.1374 REMARK 3 T33: 0.1791 T12: -0.0476 REMARK 3 T13: 0.0312 T23: -0.0478 REMARK 3 L TENSOR REMARK 3 L11: 1.5898 L22: 1.1896 REMARK 3 L33: 2.2390 L12: -0.4456 REMARK 3 L13: 0.1342 L23: 0.3943 REMARK 3 S TENSOR REMARK 3 S11: 0.0887 S12: 0.0155 S13: -0.0593 REMARK 3 S21: 0.0950 S22: -0.2207 S23: 0.1816 REMARK 3 S31: -0.0710 S32: -0.3473 S33: 0.0945 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 124 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4348 -15.5858 -3.7070 REMARK 3 T TENSOR REMARK 3 T11: 0.1153 T22: 0.1164 REMARK 3 T33: 0.1923 T12: -0.0204 REMARK 3 T13: 0.0043 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 1.9875 L22: 2.8682 REMARK 3 L33: 3.4305 L12: 0.9888 REMARK 3 L13: 0.2274 L23: -1.0305 REMARK 3 S TENSOR REMARK 3 S11: 0.1398 S12: -0.0946 S13: 0.0945 REMARK 3 S21: 0.2581 S22: -0.0695 S23: 0.0164 REMARK 3 S31: -0.1093 S32: 0.1988 S33: -0.0771 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 218 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7384 -6.9199 -24.7195 REMARK 3 T TENSOR REMARK 3 T11: 0.1592 T22: 0.0981 REMARK 3 T33: 0.1628 T12: 0.0474 REMARK 3 T13: -0.0005 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 2.6183 L22: 2.1778 REMARK 3 L33: 2.7771 L12: 0.7920 REMARK 3 L13: -0.5149 L23: 0.4965 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: 0.0701 S13: 0.0175 REMARK 3 S21: -0.2075 S22: -0.1372 S23: -0.0289 REMARK 3 S31: -0.2343 S32: -0.2078 S33: 0.1193 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YMA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45862 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.895 REMARK 200 RESOLUTION RANGE LOW (A) : 91.472 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.37200 REMARK 200 R SYM FOR SHELL (I) : 0.37200 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: 3TZA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, LITHIUM SULFATE, PHOSPHATE REMARK 280 CITRATE, PH 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.62500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 1 REMARK 465 ALA B 2 REMARK 465 ASN B 3 REMARK 465 GLY B 264 REMARK 465 GLY A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 3 REMARK 465 GLY A 262 REMARK 465 SER A 263 REMARK 465 GLY A 264 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 404 O HOH A 709 2.14 REMARK 500 O HOH B 489 O HOH B 723 2.16 REMARK 500 O HOH B 508 O HOH B 592 2.18 REMARK 500 O SER B 263 O HOH B 401 2.19 REMARK 500 O HOH A 450 O HOH A 465 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 205 30.38 -86.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 658 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH B 777 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A 623 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A 690 DISTANCE = 6.29 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4E5 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4E5 A 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FW0 RELATED DB: PDB REMARK 900 1FW0 IS WITH SAME PROTEIN AND SIMILAR SCAFFOLD OF LIGAND. DBREF 4YMA B 3 117 UNP P19491 GRIA2_RAT 413 527 DBREF 4YMA B 120 264 UNP P19491 GRIA2_RAT 653 797 DBREF 4YMA A 3 117 UNP P19491 GRIA2_RAT 413 527 DBREF 4YMA A 120 264 UNP P19491 GRIA2_RAT 653 797 SEQADV 4YMA GLY B 1 UNP P19491 EXPRESSION TAG SEQADV 4YMA ALA B 2 UNP P19491 EXPRESSION TAG SEQADV 4YMA GLY B 118 UNP P19491 LINKER SEQADV 4YMA THR B 119 UNP P19491 LINKER SEQADV 4YMA GLY A 1 UNP P19491 EXPRESSION TAG SEQADV 4YMA ALA A 2 UNP P19491 EXPRESSION TAG SEQADV 4YMA GLY A 118 UNP P19491 LINKER SEQADV 4YMA THR A 119 UNP P19491 LINKER SEQRES 1 B 264 GLY ALA ASN LYS THR VAL VAL VAL THR THR ILE LEU GLU SEQRES 2 B 264 SER PRO TYR VAL MET MET LYS LYS ASN HIS GLU MET LEU SEQRES 3 B 264 GLU GLY ASN GLU ARG TYR GLU GLY TYR CYS VAL ASP LEU SEQRES 4 B 264 ALA ALA GLU ILE ALA LYS HIS CYS GLY PHE LYS TYR LYS SEQRES 5 B 264 LEU THR ILE VAL GLY ASP GLY LYS TYR GLY ALA ARG ASP SEQRES 6 B 264 ALA ASP THR LYS ILE TRP ASN GLY MET VAL GLY GLU LEU SEQRES 7 B 264 VAL TYR GLY LYS ALA ASP ILE ALA ILE ALA PRO LEU THR SEQRES 8 B 264 ILE THR LEU VAL ARG GLU GLU VAL ILE ASP PHE SER LYS SEQRES 9 B 264 PRO PHE MET SER LEU GLY ILE SER ILE MET ILE LYS LYS SEQRES 10 B 264 GLY THR PRO ILE GLU SER ALA GLU ASP LEU SER LYS GLN SEQRES 11 B 264 THR GLU ILE ALA TYR GLY THR LEU ASP SER GLY SER THR SEQRES 12 B 264 LYS GLU PHE PHE ARG ARG SER LYS ILE ALA VAL PHE ASP SEQRES 13 B 264 LYS MET TRP THR TYR MET ARG SER ALA GLU PRO SER VAL SEQRES 14 B 264 PHE VAL ARG THR THR ALA GLU GLY VAL ALA ARG VAL ARG SEQRES 15 B 264 LYS SER LYS GLY LYS TYR ALA TYR LEU LEU GLU SER THR SEQRES 16 B 264 MET ASN GLU TYR ILE GLU GLN ARG LYS PRO CYS ASP THR SEQRES 17 B 264 MET LYS VAL GLY GLY ASN LEU ASP SER LYS GLY TYR GLY SEQRES 18 B 264 ILE ALA THR PRO LYS GLY SER SER LEU GLY ASN ALA VAL SEQRES 19 B 264 ASN LEU ALA VAL LEU LYS LEU ASN GLU GLN GLY LEU LEU SEQRES 20 B 264 ASP LYS LEU LYS ASN LYS TRP TRP TYR ASP LYS GLY GLU SEQRES 21 B 264 CYS GLY SER GLY SEQRES 1 A 264 GLY ALA ASN LYS THR VAL VAL VAL THR THR ILE LEU GLU SEQRES 2 A 264 SER PRO TYR VAL MET MET LYS LYS ASN HIS GLU MET LEU SEQRES 3 A 264 GLU GLY ASN GLU ARG TYR GLU GLY TYR CYS VAL ASP LEU SEQRES 4 A 264 ALA ALA GLU ILE ALA LYS HIS CYS GLY PHE LYS TYR LYS SEQRES 5 A 264 LEU THR ILE VAL GLY ASP GLY LYS TYR GLY ALA ARG ASP SEQRES 6 A 264 ALA ASP THR LYS ILE TRP ASN GLY MET VAL GLY GLU LEU SEQRES 7 A 264 VAL TYR GLY LYS ALA ASP ILE ALA ILE ALA PRO LEU THR SEQRES 8 A 264 ILE THR LEU VAL ARG GLU GLU VAL ILE ASP PHE SER LYS SEQRES 9 A 264 PRO PHE MET SER LEU GLY ILE SER ILE MET ILE LYS LYS SEQRES 10 A 264 GLY THR PRO ILE GLU SER ALA GLU ASP LEU SER LYS GLN SEQRES 11 A 264 THR GLU ILE ALA TYR GLY THR LEU ASP SER GLY SER THR SEQRES 12 A 264 LYS GLU PHE PHE ARG ARG SER LYS ILE ALA VAL PHE ASP SEQRES 13 A 264 LYS MET TRP THR TYR MET ARG SER ALA GLU PRO SER VAL SEQRES 14 A 264 PHE VAL ARG THR THR ALA GLU GLY VAL ALA ARG VAL ARG SEQRES 15 A 264 LYS SER LYS GLY LYS TYR ALA TYR LEU LEU GLU SER THR SEQRES 16 A 264 MET ASN GLU TYR ILE GLU GLN ARG LYS PRO CYS ASP THR SEQRES 17 A 264 MET LYS VAL GLY GLY ASN LEU ASP SER LYS GLY TYR GLY SEQRES 18 A 264 ILE ALA THR PRO LYS GLY SER SER LEU GLY ASN ALA VAL SEQRES 19 A 264 ASN LEU ALA VAL LEU LYS LEU ASN GLU GLN GLY LEU LEU SEQRES 20 A 264 ASP LYS LEU LYS ASN LYS TRP TRP TYR ASP LYS GLY GLU SEQRES 21 A 264 CYS GLY SER GLY HET SO4 B 301 5 HET SO4 B 302 5 HET GOL B 303 6 HET 4E5 B 304 18 HET EDO B 305 4 HET EDO B 306 4 HET ACT A 301 4 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET GOL A 306 6 HET 4E5 A 307 18 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM 4E5 (3R)-3-(3-CARBOXY-5-HYDROXYPHENYL)-L-PROLINE HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 6(O4 S 2-) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 4E5 2(C12 H13 N O5) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 9 ACT C2 H3 O2 1- FORMUL 16 HOH *698(H2 O) HELIX 1 AA1 ASN B 22 LEU B 26 5 5 HELIX 2 AA2 GLU B 27 GLU B 30 5 4 HELIX 3 AA3 GLY B 34 GLY B 48 1 15 HELIX 4 AA4 ASN B 72 TYR B 80 1 9 HELIX 5 AA5 THR B 93 GLU B 98 1 6 HELIX 6 AA6 SER B 123 LYS B 129 1 7 HELIX 7 AA7 GLY B 141 SER B 150 1 10 HELIX 8 AA8 ILE B 152 ALA B 165 1 14 HELIX 9 AA9 THR B 173 SER B 184 1 12 HELIX 10 AB1 SER B 194 GLU B 201 1 8 HELIX 11 AB2 LEU B 230 GLN B 244 1 15 HELIX 12 AB3 GLY B 245 TYR B 256 1 12 HELIX 13 AB4 ASN A 22 LEU A 26 5 5 HELIX 14 AB5 GLU A 27 GLU A 30 5 4 HELIX 15 AB6 GLY A 34 GLY A 48 1 15 HELIX 16 AB7 ASN A 72 TYR A 80 1 9 HELIX 17 AB8 THR A 93 GLU A 98 1 6 HELIX 18 AB9 SER A 123 LYS A 129 1 7 HELIX 19 AC1 GLY A 141 SER A 150 1 10 HELIX 20 AC2 ILE A 152 ALA A 165 1 14 HELIX 21 AC3 THR A 173 SER A 184 1 12 HELIX 22 AC4 SER A 194 GLU A 201 1 8 HELIX 23 AC5 LEU A 230 GLN A 244 1 15 HELIX 24 AC6 GLY A 245 TYR A 256 1 12 SHEET 1 AA1 3 TYR B 51 ILE B 55 0 SHEET 2 AA1 3 VAL B 6 THR B 10 1 N VAL B 8 O THR B 54 SHEET 3 AA1 3 ILE B 85 ALA B 86 1 O ILE B 85 N THR B 9 SHEET 1 AA2 2 MET B 18 MET B 19 0 SHEET 2 AA2 2 TYR B 32 GLU B 33 -1 O GLU B 33 N MET B 18 SHEET 1 AA3 2 ILE B 100 PHE B 102 0 SHEET 2 AA3 2 ALA B 223 PRO B 225 -1 O THR B 224 N ASP B 101 SHEET 1 AA4 2 MET B 107 LEU B 109 0 SHEET 2 AA4 2 LYS B 218 TYR B 220 -1 O LYS B 218 N LEU B 109 SHEET 1 AA5 4 ALA B 134 GLY B 136 0 SHEET 2 AA5 4 TYR B 188 GLU B 193 1 O LEU B 191 N GLY B 136 SHEET 3 AA5 4 ILE B 111 LYS B 116 -1 N MET B 114 O TYR B 190 SHEET 4 AA5 4 THR B 208 VAL B 211 -1 O MET B 209 N ILE B 115 SHEET 1 AA6 3 TYR A 51 ILE A 55 0 SHEET 2 AA6 3 VAL A 6 THR A 10 1 N VAL A 6 O LYS A 52 SHEET 3 AA6 3 ILE A 85 ALA A 86 1 O ILE A 85 N THR A 9 SHEET 1 AA7 2 MET A 18 MET A 19 0 SHEET 2 AA7 2 TYR A 32 GLU A 33 -1 O GLU A 33 N MET A 18 SHEET 1 AA8 2 ILE A 100 PHE A 102 0 SHEET 2 AA8 2 ALA A 223 PRO A 225 -1 O THR A 224 N ASP A 101 SHEET 1 AA9 2 MET A 107 LEU A 109 0 SHEET 2 AA9 2 LYS A 218 TYR A 220 -1 O LYS A 218 N LEU A 109 SHEET 1 AB1 4 ALA A 134 GLY A 136 0 SHEET 2 AB1 4 TYR A 188 GLU A 193 1 O LEU A 191 N GLY A 136 SHEET 3 AB1 4 ILE A 111 LYS A 116 -1 N MET A 114 O TYR A 190 SHEET 4 AB1 4 THR A 208 VAL A 211 -1 O MET A 209 N ILE A 115 SSBOND 1 CYS B 206 CYS B 261 1555 1555 2.04 SSBOND 2 CYS A 206 CYS A 261 1555 1555 2.03 CISPEP 1 SER B 14 PRO B 15 0 3.86 CISPEP 2 GLU B 166 PRO B 167 0 -4.23 CISPEP 3 LYS B 204 PRO B 205 0 6.12 CISPEP 4 SER A 14 PRO A 15 0 4.82 CISPEP 5 GLU A 166 PRO A 167 0 -3.57 CISPEP 6 LYS A 204 PRO A 205 0 2.67 SITE 1 AC1 6 LYS B 144 ARG B 148 ARG B 163 HOH B 409 SITE 2 AC1 6 HOH B 410 HOH B 428 SITE 1 AC2 7 LYS B 60 TYR B 61 4E5 B 304 HOH B 767 SITE 2 AC2 7 HOH B 770 HOH B 774 HOH B 775 SITE 1 AC3 2 HIS B 46 LYS B 240 SITE 1 AC4 16 TYR B 61 PRO B 89 LEU B 90 THR B 91 SITE 2 AC4 16 ARG B 96 LEU B 138 SER B 142 THR B 143 SITE 3 AC4 16 GLU B 193 SO4 B 302 HOH B 522 HOH B 532 SITE 4 AC4 16 HOH B 571 HOH B 735 HOH B 763 HOH B 774 SITE 1 AC5 4 LEU A 26 GLU B 30 HOH B 433 HOH B 526 SITE 1 AC6 2 LYS B 116 HOH B 588 SITE 1 AC7 7 PRO A 105 PHE A 106 MET A 107 SER A 108 SITE 2 AC7 7 ASN A 242 HOH A 611 SER B 217 SITE 1 AC8 1 LYS A 185 SITE 1 AC9 4 LYS A 144 ARG A 148 HOH A 404 HOH A 676 SITE 1 AD1 4 LYS A 82 LYS A 185 HOH A 428 HOH A 432 SITE 1 AD2 6 LYS A 60 TYR A 61 4E5 A 307 HOH A 664 SITE 2 AD2 6 HOH A 695 HOH A 703 SITE 1 AD3 6 HIS A 46 ALA A 233 LEU A 236 ALA A 237 SITE 2 AD3 6 LYS A 240 HOH A 687 SITE 1 AD4 14 TYR A 61 PRO A 89 LEU A 90 THR A 91 SITE 2 AD4 14 ARG A 96 LEU A 138 SER A 142 THR A 143 SITE 3 AD4 14 GLU A 193 SO4 A 305 HOH A 504 HOH A 527 SITE 4 AD4 14 HOH A 571 HOH A 691 CRYST1 48.880 65.250 91.550 90.00 92.36 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020458 0.000000 0.000843 0.00000 SCALE2 0.000000 0.015326 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010932 0.00000