HEADER TRANSFERASE 06-MAR-15 4YMG TITLE CRYSTAL STRUCTURE OF SAM-BOUND PODOSPORA ANSERINA METHYLTRANSFERASE TITLE 2 PAMTH1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SAM-DEPENDENT O-METHYLTRANFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PODOSPORA ANSERINA; SOURCE 3 ORGANISM_TAXID: 5145; SOURCE 4 GENE: MTH1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET16B KEYWDS TRANSFERASE, METHYLATION EXPDTA X-RAY DIFFRACTION AUTHOR D.KUDLINZKI,V.L.LINHARD,D.CHATTERJEE,K.SAXENA,S.SREERAMULU,H.SCHWALBE REVDAT 5 10-JAN-24 4YMG 1 REMARK REVDAT 4 12-JUN-19 4YMG 1 AUTHOR REVDAT 3 08-JUL-15 4YMG 1 JRNL REVDAT 2 03-JUN-15 4YMG 1 JRNL REVDAT 1 27-MAY-15 4YMG 0 JRNL AUTH D.CHATTERJEE,D.KUDLINZKI,V.LINHARD,K.SAXENA,U.SCHIEBORR, JRNL AUTH 2 S.L.GANDE,J.P.WURM,J.WOHNERT,R.ABELE,V.V.ROGOV,V.DOTSCH, JRNL AUTH 3 H.D.OSIEWACZ,S.SREERAMULU,H.SCHWALBE JRNL TITL STRUCTURE AND BIOPHYSICAL CHARACTERIZATION OF THE JRNL TITL 2 S-ADENOSYLMETHIONINE-DEPENDENT O-METHYLTRANSFERASE PAMTH1, A JRNL TITL 3 PUTATIVE ENZYME ACCUMULATING DURING SENESCENCE OF PODOSPORA JRNL TITL 4 ANSERINA. JRNL REF J.BIOL.CHEM. V. 290 16415 2015 JRNL REFN ESSN 1083-351X JRNL PMID 25979334 JRNL DOI 10.1074/JBC.M115.660829 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 39319 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3688 - 4.5741 1.00 2840 150 0.1529 0.1876 REMARK 3 2 4.5741 - 3.6313 1.00 2731 144 0.1283 0.1436 REMARK 3 3 3.6313 - 3.1724 1.00 2697 142 0.1456 0.2061 REMARK 3 4 3.1724 - 2.8825 1.00 2697 142 0.1690 0.2169 REMARK 3 5 2.8825 - 2.6759 1.00 2656 140 0.1616 0.1843 REMARK 3 6 2.6759 - 2.5182 1.00 2684 141 0.1548 0.2311 REMARK 3 7 2.5182 - 2.3921 1.00 2641 139 0.1546 0.2189 REMARK 3 8 2.3921 - 2.2879 1.00 2654 139 0.1554 0.2247 REMARK 3 9 2.2879 - 2.1999 1.00 2634 139 0.1596 0.2221 REMARK 3 10 2.1999 - 2.1240 1.00 2652 140 0.1685 0.2278 REMARK 3 11 2.1240 - 2.0576 1.00 2646 139 0.1815 0.2337 REMARK 3 12 2.0576 - 1.9987 1.00 2640 139 0.1946 0.2510 REMARK 3 13 1.9987 - 1.9461 1.00 2624 138 0.2067 0.2662 REMARK 3 14 1.9461 - 1.8986 0.97 2556 135 0.2405 0.3062 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3910 REMARK 3 ANGLE : 0.999 5302 REMARK 3 CHIRALITY : 0.041 564 REMARK 3 PLANARITY : 0.004 675 REMARK 3 DIHEDRAL : 14.839 1438 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.6012 12.7593 -8.5310 REMARK 3 T TENSOR REMARK 3 T11: 0.1500 T22: 0.1444 REMARK 3 T33: 0.1087 T12: 0.0250 REMARK 3 T13: -0.0462 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.0637 L22: 0.1467 REMARK 3 L33: 0.1867 L12: -0.1643 REMARK 3 L13: -0.2183 L23: 0.1436 REMARK 3 S TENSOR REMARK 3 S11: 0.0707 S12: 0.0065 S13: -0.0539 REMARK 3 S21: -0.0124 S22: -0.0464 S23: 0.1640 REMARK 3 S31: -0.1509 S32: -0.1493 S33: -0.0191 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7426 12.4542 -12.1164 REMARK 3 T TENSOR REMARK 3 T11: 0.1568 T22: 0.1622 REMARK 3 T33: 0.1618 T12: -0.0297 REMARK 3 T13: -0.0004 T23: -0.0391 REMARK 3 L TENSOR REMARK 3 L11: 0.1026 L22: 0.0666 REMARK 3 L33: 0.1430 L12: -0.0206 REMARK 3 L13: -0.0306 L23: -0.0923 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: 0.1217 S13: -0.2519 REMARK 3 S21: 0.0002 S22: 0.0311 S23: -0.0465 REMARK 3 S31: -0.0230 S32: -0.0532 S33: 0.0005 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8427 12.6089 -21.8828 REMARK 3 T TENSOR REMARK 3 T11: 0.2157 T22: 0.1736 REMARK 3 T33: 0.1415 T12: -0.0596 REMARK 3 T13: 0.0230 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 0.2492 L22: 0.2882 REMARK 3 L33: 0.7220 L12: 0.2019 REMARK 3 L13: 0.1447 L23: 0.4403 REMARK 3 S TENSOR REMARK 3 S11: -0.2198 S12: 0.1026 S13: -0.0160 REMARK 3 S21: -0.3916 S22: 0.1534 S23: -0.0434 REMARK 3 S31: -0.3595 S32: 0.2161 S33: -0.0431 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3644 2.0259 -12.6067 REMARK 3 T TENSOR REMARK 3 T11: 0.1349 T22: 0.1583 REMARK 3 T33: 0.1847 T12: 0.0130 REMARK 3 T13: 0.0182 T23: -0.0507 REMARK 3 L TENSOR REMARK 3 L11: 0.1508 L22: 0.1792 REMARK 3 L33: 0.4925 L12: 0.1514 REMARK 3 L13: 0.1598 L23: 0.0272 REMARK 3 S TENSOR REMARK 3 S11: 0.0609 S12: 0.0066 S13: -0.0652 REMARK 3 S21: -0.0698 S22: 0.0004 S23: -0.0752 REMARK 3 S31: 0.0216 S32: 0.1168 S33: 0.0038 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8910 -4.6924 -6.9392 REMARK 3 T TENSOR REMARK 3 T11: 0.1217 T22: 0.1063 REMARK 3 T33: 0.1755 T12: 0.0057 REMARK 3 T13: -0.0139 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.3197 L22: 0.0116 REMARK 3 L33: 0.4921 L12: -0.0197 REMARK 3 L13: -0.4174 L23: 0.0207 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: -0.0767 S13: -0.1591 REMARK 3 S21: 0.0370 S22: 0.0254 S23: -0.0979 REMARK 3 S31: 0.1449 S32: -0.0134 S33: 0.0007 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3073 -3.5110 1.0449 REMARK 3 T TENSOR REMARK 3 T11: 0.1790 T22: 0.1436 REMARK 3 T33: 0.1398 T12: -0.0094 REMARK 3 T13: -0.0170 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 0.0513 L22: 0.1884 REMARK 3 L33: 0.1328 L12: -0.0431 REMARK 3 L13: 0.0213 L23: 0.1314 REMARK 3 S TENSOR REMARK 3 S11: 0.0728 S12: 0.0733 S13: 0.0424 REMARK 3 S21: 0.1533 S22: -0.0272 S23: 0.1130 REMARK 3 S31: 0.1628 S32: -0.0756 S33: -0.0006 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0993 -3.0142 17.4382 REMARK 3 T TENSOR REMARK 3 T11: 0.2099 T22: 0.1830 REMARK 3 T33: 0.2078 T12: 0.0298 REMARK 3 T13: -0.0320 T23: 0.0496 REMARK 3 L TENSOR REMARK 3 L11: 0.0441 L22: 0.0526 REMARK 3 L33: -0.0052 L12: 0.0586 REMARK 3 L13: -0.0044 L23: 0.0044 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: -0.0370 S13: -0.1565 REMARK 3 S21: -0.0291 S22: -0.0351 S23: 0.0136 REMARK 3 S31: 0.2826 S32: 0.0208 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 42 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4523 8.8188 14.2742 REMARK 3 T TENSOR REMARK 3 T11: 0.1502 T22: 0.1699 REMARK 3 T33: 0.1519 T12: 0.0125 REMARK 3 T13: -0.0306 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.2731 L22: 0.2056 REMARK 3 L33: 0.3737 L12: -0.1972 REMARK 3 L13: 0.0596 L23: 0.1157 REMARK 3 S TENSOR REMARK 3 S11: 0.0454 S12: -0.0865 S13: -0.0673 REMARK 3 S21: 0.1480 S22: 0.0076 S23: -0.1183 REMARK 3 S31: 0.1043 S32: 0.1052 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1505 6.4452 27.8733 REMARK 3 T TENSOR REMARK 3 T11: 0.2449 T22: 0.2834 REMARK 3 T33: 0.1950 T12: 0.0072 REMARK 3 T13: -0.0685 T23: 0.0738 REMARK 3 L TENSOR REMARK 3 L11: 0.6147 L22: 0.6139 REMARK 3 L33: 0.1637 L12: 0.3103 REMARK 3 L13: -0.2360 L23: 0.0392 REMARK 3 S TENSOR REMARK 3 S11: -0.0807 S12: -0.1413 S13: -0.1476 REMARK 3 S21: 0.3845 S22: -0.0975 S23: -0.4358 REMARK 3 S31: 0.2192 S32: 0.1092 S33: -0.0497 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4957 19.0880 18.9544 REMARK 3 T TENSOR REMARK 3 T11: 0.1470 T22: 0.1733 REMARK 3 T33: 0.1533 T12: -0.0159 REMARK 3 T13: -0.0343 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.0464 L22: 0.1876 REMARK 3 L33: 0.4183 L12: 0.0013 REMARK 3 L13: -0.0742 L23: -0.1507 REMARK 3 S TENSOR REMARK 3 S11: 0.0396 S12: -0.0744 S13: 0.0531 REMARK 3 S21: 0.1575 S22: 0.0262 S23: -0.1349 REMARK 3 S31: -0.1291 S32: 0.2505 S33: 0.0617 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 147 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9657 16.9207 10.1088 REMARK 3 T TENSOR REMARK 3 T11: 0.1103 T22: 0.1046 REMARK 3 T33: 0.0946 T12: -0.0072 REMARK 3 T13: 0.0071 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.1907 L22: 0.2511 REMARK 3 L33: 0.5352 L12: -0.0043 REMARK 3 L13: 0.1588 L23: -0.0176 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: -0.0031 S13: 0.0220 REMARK 3 S21: 0.0732 S22: 0.0371 S23: -0.0461 REMARK 3 S31: -0.0521 S32: -0.0532 S33: 0.0526 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 191 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2042 16.0210 12.0361 REMARK 3 T TENSOR REMARK 3 T11: 0.1164 T22: 0.1519 REMARK 3 T33: 0.1096 T12: 0.0065 REMARK 3 T13: -0.0026 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.3031 L22: 0.0668 REMARK 3 L33: 0.2048 L12: -0.1217 REMARK 3 L13: -0.0487 L23: 0.0213 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: 0.0334 S13: 0.1445 REMARK 3 S21: -0.1067 S22: 0.1755 S23: 0.1521 REMARK 3 S31: -0.0025 S32: -0.1344 S33: 0.0516 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 214 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1380 22.2013 -0.0670 REMARK 3 T TENSOR REMARK 3 T11: 0.1194 T22: 0.0957 REMARK 3 T33: 0.1371 T12: -0.0127 REMARK 3 T13: 0.0170 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.1328 L22: -0.0047 REMARK 3 L33: 0.0544 L12: -0.0039 REMARK 3 L13: 0.1304 L23: -0.0118 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: 0.0743 S13: 0.1069 REMARK 3 S21: 0.0208 S22: 0.0791 S23: 0.1834 REMARK 3 S31: -0.0415 S32: -0.0442 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YMG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5-6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS XDSAPP 1.1 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39322 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.899 REMARK 200 RESOLUTION RANGE LOW (A) : 45.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.630 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4QVK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 0.1M BIS-TRIS, REMARK 280 25% PEG3350, PH 6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.52000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.35900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.39550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.35900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.52000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.39550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 236 REMARK 465 ALA A 237 REMARK 465 GLN A 238 REMARK 465 ARG A 239 REMARK 465 ALA A 240 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1248 O HOH A 1254 2.15 REMARK 500 NE2 GLN A 53 O HOH A 1199 2.15 REMARK 500 O HOH A 1263 O HOH B 1269 2.18 REMARK 500 O HOH B 1275 O HOH B 1283 2.18 REMARK 500 O HOH B 1175 O HOH B 1236 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 44 31.96 -93.59 REMARK 500 TYR A 75 -112.28 51.44 REMARK 500 ASP A 144 39.20 -150.75 REMARK 500 ALA A 145 -131.06 -118.28 REMARK 500 PHE A 225 -125.85 54.36 REMARK 500 TYR B 75 -113.91 52.16 REMARK 500 ARG B 119 -0.86 -150.69 REMARK 500 ASP B 144 40.26 -148.45 REMARK 500 ALA B 145 -140.44 -112.13 REMARK 500 PHE B 225 -122.42 54.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1005 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PG4 A1004 O1 REMARK 620 2 PG4 A1004 O2 64.9 REMARK 620 3 PG4 A1004 O3 131.5 70.1 REMARK 620 4 PG4 A1004 O4 155.7 139.2 71.8 REMARK 620 5 PG4 A1004 O5 84.3 145.2 143.7 72.0 REMARK 620 6 HOH A1204 O 84.5 95.3 82.7 93.6 97.4 REMARK 620 7 HOH B1133 O 94.4 85.6 99.2 86.8 80.9 178.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QVK RELATED DB: PDB REMARK 900 4QVK CONTAINS THE SAME PROTEIN COMPLEXED WITH SAM DBREF 4YMG A 1 240 UNP Q9HGR1 Q9HGR1_PODAS 1 240 DBREF 4YMG B 1 240 UNP Q9HGR1 Q9HGR1_PODAS 1 240 SEQRES 1 A 240 MET LEU GLY SER ILE LEU PRO PHE ASN GLU GLU THR ALA SEQRES 2 A 240 ASP ARG VAL SER ALA TYR CYS GLU LYS ASN SER HIS GLY SEQRES 3 A 240 ILE PRO ASP ALA LEU VAL GLU HIS TRP GLU TRP THR ARG SEQRES 4 A 240 THR ARG PHE PRO ASP ALA ASP LYS MET SER SER ARG LEU SEQRES 5 A 240 GLN GLY SER TRP MET ILE PHE THR ALA ARG ASP ARG LYS SEQRES 6 A 240 PRO LYS ARG ILE LEU GLU ILE GLY CYS TYR SER GLY TYR SEQRES 7 A 240 SER ALA LEU ALA TRP TYR GLU GLY THR ARG ASP THR LYS SEQRES 8 A 240 ALA GLU ILE VAL THR LEU GLU TYR SER PRO LYS MET ILE SEQRES 9 A 240 ALA ALA SER ARG GLU ALA PHE LYS LYS TYR GLY VAL GLY SEQRES 10 A 240 ASP ARG VAL LYS LEU ILE GLU GLY PRO ALA GLU ASN THR SEQRES 11 A 240 LEU LYS THR LEU GLU GLY GLU PHE ASP LEU ILE PHE VAL SEQRES 12 A 240 ASP ALA ASN LYS ASP GLY TYR ALA GLY TYR VAL LYS THR SEQRES 13 A 240 ILE LEU ASP GLN GLY LEU LEU SER ALA ASN GLY ILE ILE SEQRES 14 A 240 LEU CYS ASP ASN VAL PHE ALA ARG GLY LEU THR ILE GLY SEQRES 15 A 240 PRO ASP CYS ALA PRO TRP LEU ASN ASP HIS VAL ARG PRO SEQRES 16 A 240 TYR TRP ASN GLY CYS GLY GLN ALA LEU ASP LYS PHE SER SEQRES 17 A 240 ALA GLY LEU MET GLU ASP PRO ARG ILE ASP VAL LEU LEU SEQRES 18 A 240 LEU PRO VAL PHE ASP GLY VAL THR GLN ILE ARG TRP LYS SEQRES 19 A 240 ASP GLY ALA GLN ARG ALA SEQRES 1 B 240 MET LEU GLY SER ILE LEU PRO PHE ASN GLU GLU THR ALA SEQRES 2 B 240 ASP ARG VAL SER ALA TYR CYS GLU LYS ASN SER HIS GLY SEQRES 3 B 240 ILE PRO ASP ALA LEU VAL GLU HIS TRP GLU TRP THR ARG SEQRES 4 B 240 THR ARG PHE PRO ASP ALA ASP LYS MET SER SER ARG LEU SEQRES 5 B 240 GLN GLY SER TRP MET ILE PHE THR ALA ARG ASP ARG LYS SEQRES 6 B 240 PRO LYS ARG ILE LEU GLU ILE GLY CYS TYR SER GLY TYR SEQRES 7 B 240 SER ALA LEU ALA TRP TYR GLU GLY THR ARG ASP THR LYS SEQRES 8 B 240 ALA GLU ILE VAL THR LEU GLU TYR SER PRO LYS MET ILE SEQRES 9 B 240 ALA ALA SER ARG GLU ALA PHE LYS LYS TYR GLY VAL GLY SEQRES 10 B 240 ASP ARG VAL LYS LEU ILE GLU GLY PRO ALA GLU ASN THR SEQRES 11 B 240 LEU LYS THR LEU GLU GLY GLU PHE ASP LEU ILE PHE VAL SEQRES 12 B 240 ASP ALA ASN LYS ASP GLY TYR ALA GLY TYR VAL LYS THR SEQRES 13 B 240 ILE LEU ASP GLN GLY LEU LEU SER ALA ASN GLY ILE ILE SEQRES 14 B 240 LEU CYS ASP ASN VAL PHE ALA ARG GLY LEU THR ILE GLY SEQRES 15 B 240 PRO ASP CYS ALA PRO TRP LEU ASN ASP HIS VAL ARG PRO SEQRES 16 B 240 TYR TRP ASN GLY CYS GLY GLN ALA LEU ASP LYS PHE SER SEQRES 17 B 240 ALA GLY LEU MET GLU ASP PRO ARG ILE ASP VAL LEU LEU SEQRES 18 B 240 LEU PRO VAL PHE ASP GLY VAL THR GLN ILE ARG TRP LYS SEQRES 19 B 240 ASP GLY ALA GLN ARG ALA HET SAM A1001 27 HET PO4 A1002 5 HET PO4 A1003 5 HET PG4 A1004 13 HET MG A1005 1 HET SAM B1001 27 HET PO4 B1002 5 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM MG MAGNESIUM ION FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 4 PO4 3(O4 P 3-) FORMUL 6 PG4 C8 H18 O5 FORMUL 7 MG MG 2+ FORMUL 10 HOH *413(H2 O) HELIX 1 AA1 ASN A 9 ASN A 23 1 15 HELIX 2 AA2 PRO A 28 PHE A 42 1 15 HELIX 3 AA3 ASP A 44 MET A 48 5 5 HELIX 4 AA4 SER A 50 LYS A 65 1 16 HELIX 5 AA5 GLY A 77 GLY A 86 1 10 HELIX 6 AA6 SER A 100 GLY A 115 1 16 HELIX 7 AA7 PRO A 126 LEU A 134 1 9 HELIX 8 AA8 ASN A 146 ASP A 148 5 3 HELIX 9 AA9 GLY A 149 GLN A 160 1 12 HELIX 10 AB1 PHE A 175 LEU A 179 5 5 HELIX 11 AB2 ASN A 190 HIS A 192 5 3 HELIX 12 AB3 VAL A 193 MET A 212 1 20 HELIX 13 AB4 ASN B 9 ASN B 23 1 15 HELIX 14 AB5 PRO B 28 PHE B 42 1 15 HELIX 15 AB6 SER B 50 LYS B 65 1 16 HELIX 16 AB7 GLY B 77 THR B 87 1 11 HELIX 17 AB8 SER B 100 GLY B 115 1 16 HELIX 18 AB9 PRO B 126 LEU B 131 1 6 HELIX 19 AC1 LYS B 132 LEU B 134 5 3 HELIX 20 AC2 ASN B 146 ASP B 148 5 3 HELIX 21 AC3 GLY B 149 GLN B 160 1 12 HELIX 22 AC4 PHE B 175 LEU B 179 5 5 HELIX 23 AC5 ASN B 190 HIS B 192 5 3 HELIX 24 AC6 VAL B 193 MET B 212 1 20 SHEET 1 AA1 7 VAL A 120 GLU A 124 0 SHEET 2 AA1 7 GLU A 93 GLU A 98 1 N ILE A 94 O LYS A 121 SHEET 3 AA1 7 ARG A 68 ILE A 72 1 N ILE A 69 O VAL A 95 SHEET 4 AA1 7 PHE A 138 VAL A 143 1 O PHE A 142 N LEU A 70 SHEET 5 AA1 7 LEU A 163 CYS A 171 1 O LEU A 170 N ILE A 141 SHEET 6 AA1 7 VAL A 228 TRP A 233 -1 O ILE A 231 N ILE A 169 SHEET 7 AA1 7 ILE A 217 LEU A 222 -1 N LEU A 220 O GLN A 230 SHEET 1 AA2 7 VAL B 120 GLU B 124 0 SHEET 2 AA2 7 GLU B 93 GLU B 98 1 N THR B 96 O ILE B 123 SHEET 3 AA2 7 ARG B 68 ILE B 72 1 N ILE B 69 O VAL B 95 SHEET 4 AA2 7 PHE B 138 VAL B 143 1 O PHE B 142 N LEU B 70 SHEET 5 AA2 7 LEU B 163 CYS B 171 1 O LEU B 170 N ILE B 141 SHEET 6 AA2 7 VAL B 228 TRP B 233 -1 O ILE B 231 N ILE B 169 SHEET 7 AA2 7 ILE B 217 LEU B 222 -1 N LEU B 220 O GLN B 230 LINK O1 PG4 A1004 MG MG A1005 1555 1555 2.67 LINK O2 PG4 A1004 MG MG A1005 1555 1555 2.64 LINK O3 PG4 A1004 MG MG A1005 1555 1555 2.48 LINK O4 PG4 A1004 MG MG A1005 1555 1555 2.25 LINK O5 PG4 A1004 MG MG A1005 1555 1555 2.82 LINK MG MG A1005 O HOH A1204 1555 1555 2.43 LINK MG MG A1005 O HOH B1133 1555 1555 2.28 SITE 1 AC1 21 LYS A 47 MET A 48 SER A 49 GLY A 73 SITE 2 AC1 21 TYR A 75 TYR A 78 SER A 79 GLU A 98 SITE 3 AC1 21 TYR A 99 GLY A 125 PRO A 126 ALA A 127 SITE 4 AC1 21 GLU A 128 ASP A 144 ALA A 145 ASN A 146 SITE 5 AC1 21 TYR A 153 PO4 A1003 HOH A1126 HOH A1130 SITE 6 AC1 21 HOH A1161 SITE 1 AC2 5 TYR A 84 LYS A 91 GLY A 117 ARG A 119 SITE 2 AC2 5 HOH A1103 SITE 1 AC3 8 LYS A 47 ALA A 145 ASN A 146 LYS A 147 SITE 2 AC3 8 TYR A 196 SAM A1001 HOH A1112 HOH A1188 SITE 1 AC4 8 LYS A 22 ASP A 63 ARG A 64 MG A1005 SITE 2 AC4 8 HOH A1101 ASP B 63 ARG B 64 ASN B 166 SITE 1 AC5 3 PG4 A1004 HOH A1204 HOH B1133 SITE 1 AC6 21 LYS B 47 MET B 48 SER B 49 GLY B 73 SITE 2 AC6 21 TYR B 75 TYR B 78 SER B 79 GLU B 98 SITE 3 AC6 21 TYR B 99 GLY B 125 PRO B 126 ALA B 127 SITE 4 AC6 21 GLU B 128 ASP B 144 ALA B 145 ASN B 146 SITE 5 AC6 21 TYR B 153 PO4 B1002 HOH B1135 HOH B1191 SITE 6 AC6 21 HOH B1217 SITE 1 AC7 9 HIS A 192 LYS B 47 ASN B 146 TYR B 196 SITE 2 AC7 9 SAM B1001 HOH B1106 HOH B1107 HOH B1108 SITE 3 AC7 9 HOH B1118 CRYST1 75.040 78.791 82.718 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013326 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012089 0.00000