data_4YN0 # _entry.id 4YN0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4YN0 pdb_00004yn0 10.2210/pdb4yn0/pdb WWPDB D_1000204610 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-04-15 2 'Structure model' 1 1 2015-04-29 3 'Structure model' 1 2 2017-09-20 4 'Structure model' 1 3 2019-12-04 5 'Structure model' 1 4 2020-07-29 6 'Structure model' 1 5 2024-10-30 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' 6 3 'Structure model' 'Source and taxonomy' 7 4 'Structure model' 'Author supporting evidence' 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Derived calculations' 10 5 'Structure model' 'Structure summary' 11 6 'Structure model' 'Data collection' 12 6 'Structure model' 'Database references' 13 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' citation 2 3 'Structure model' entity_src_gen 3 3 'Structure model' pdbx_audit_support 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' software 6 4 'Structure model' pdbx_audit_support 7 5 'Structure model' chem_comp 8 5 'Structure model' entity 9 5 'Structure model' pdbx_chem_comp_identifier 10 5 'Structure model' pdbx_entity_nonpoly 11 5 'Structure model' struct_conn 12 5 'Structure model' struct_site 13 5 'Structure model' struct_site_gen 14 6 'Structure model' chem_comp 15 6 'Structure model' chem_comp_atom 16 6 'Structure model' chem_comp_bond 17 6 'Structure model' database_2 18 6 'Structure model' pdbx_entry_details 19 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_id_CSD' 2 3 'Structure model' '_entity_src_gen.pdbx_alt_source_flag' 3 3 'Structure model' '_pdbx_audit_support.funding_organization' 4 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 5 4 'Structure model' '_pdbx_audit_support.funding_organization' 6 5 'Structure model' '_chem_comp.name' 7 5 'Structure model' '_chem_comp.type' 8 5 'Structure model' '_entity.pdbx_description' 9 5 'Structure model' '_pdbx_entity_nonpoly.name' 10 5 'Structure model' '_struct_conn.conn_type_id' 11 5 'Structure model' '_struct_conn.id' 12 5 'Structure model' '_struct_conn.pdbx_dist_value' 13 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 14 5 'Structure model' '_struct_conn.pdbx_role' 15 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 16 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 17 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 18 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 19 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 20 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 21 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 22 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 23 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 6 'Structure model' '_chem_comp.pdbx_synonyms' 29 6 'Structure model' '_database_2.pdbx_DOI' 30 6 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4YN0 _pdbx_database_status.recvd_initial_deposition_date 2015-03-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Xu, K.' 1 ? 'Nikolov, D.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Genes Dev.' _citation.journal_id_ASTM GEDEEP _citation.journal_id_CSD 2056 _citation.journal_id_ISSN 0890-9369 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 29 _citation.language ? _citation.page_first 785 _citation.page_last 790 _citation.title 'The crystal structure of DR6 in complex with the amyloid precursor protein provides insight into death receptor activation.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1101/gad.257675.114 _citation.pdbx_database_id_PubMed 25838500 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xu, K.' 1 ? primary 'Olsen, O.' 2 ? primary 'Tzvetkova-Robev, D.' 3 ? primary 'Tessier-Lavigne, M.' 4 ? primary 'Nikolov, D.B.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tumor necrosis factor receptor superfamily member 21' 20702.660 1 ? ? 'UNP RESIDUES 42-220' 'Cysteine rich domain of mouse DR6 protein' 2 polymer man 'Amyloid beta A4 protein' 27257.801 1 ? ? 'UNP RESIDUES 370-592' ? 3 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 102 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Death receptor 6' 2 'ABPP,APP,Alzheimer disease amyloid A4 protein homolog,Amyloidogenic glycoprotein,AG' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSQPEQKTLSLPGTYRHVDRTTGQVLTCDKCPAGTYVSEHCTNMSLRVCSSCPAGTFTRHENGIERCHDCSQPCPWPMIE RLPCAALTDRECICPPGMYQSNGTCAPHTVCPVGWGVRKKGTENEDVRCKQCARGTFSDVPSSVMKCKAHTDCLGQNLEV VKPGTKETDNVCGMRLFFSSTASGRGLVPR ; ;GSQPEQKTLSLPGTYRHVDRTTGQVLTCDKCPAGTYVSEHCTNMSLRVCSSCPAGTFTRHENGIERCHDCSQPCPWPMIE RLPCAALTDRECICPPGMYQSNGTCAPHTVCPVGWGVRKKGTENEDVRCKQCARGTFSDVPSSVMKCKAHTDCLGQNLEV VKPGTKETDNVCGMRLFFSSTASGRGLVPR ; A ? 2 'polypeptide(L)' no no ;GSSTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAA NERQQLVETHMARVEAMLNDRRRLALENYITALQAVPPRPHHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIR SQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDASGRGLVPR ; ;GSSTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAA NERQQLVETHMARVEAMLNDRRRLALENYITALQAVPPRPHHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIR SQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDASGRGLVPR ; B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 'MAGNESIUM ION' MG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 GLN n 1 4 PRO n 1 5 GLU n 1 6 GLN n 1 7 LYS n 1 8 THR n 1 9 LEU n 1 10 SER n 1 11 LEU n 1 12 PRO n 1 13 GLY n 1 14 THR n 1 15 TYR n 1 16 ARG n 1 17 HIS n 1 18 VAL n 1 19 ASP n 1 20 ARG n 1 21 THR n 1 22 THR n 1 23 GLY n 1 24 GLN n 1 25 VAL n 1 26 LEU n 1 27 THR n 1 28 CYS n 1 29 ASP n 1 30 LYS n 1 31 CYS n 1 32 PRO n 1 33 ALA n 1 34 GLY n 1 35 THR n 1 36 TYR n 1 37 VAL n 1 38 SER n 1 39 GLU n 1 40 HIS n 1 41 CYS n 1 42 THR n 1 43 ASN n 1 44 MET n 1 45 SER n 1 46 LEU n 1 47 ARG n 1 48 VAL n 1 49 CYS n 1 50 SER n 1 51 SER n 1 52 CYS n 1 53 PRO n 1 54 ALA n 1 55 GLY n 1 56 THR n 1 57 PHE n 1 58 THR n 1 59 ARG n 1 60 HIS n 1 61 GLU n 1 62 ASN n 1 63 GLY n 1 64 ILE n 1 65 GLU n 1 66 ARG n 1 67 CYS n 1 68 HIS n 1 69 ASP n 1 70 CYS n 1 71 SER n 1 72 GLN n 1 73 PRO n 1 74 CYS n 1 75 PRO n 1 76 TRP n 1 77 PRO n 1 78 MET n 1 79 ILE n 1 80 GLU n 1 81 ARG n 1 82 LEU n 1 83 PRO n 1 84 CYS n 1 85 ALA n 1 86 ALA n 1 87 LEU n 1 88 THR n 1 89 ASP n 1 90 ARG n 1 91 GLU n 1 92 CYS n 1 93 ILE n 1 94 CYS n 1 95 PRO n 1 96 PRO n 1 97 GLY n 1 98 MET n 1 99 TYR n 1 100 GLN n 1 101 SER n 1 102 ASN n 1 103 GLY n 1 104 THR n 1 105 CYS n 1 106 ALA n 1 107 PRO n 1 108 HIS n 1 109 THR n 1 110 VAL n 1 111 CYS n 1 112 PRO n 1 113 VAL n 1 114 GLY n 1 115 TRP n 1 116 GLY n 1 117 VAL n 1 118 ARG n 1 119 LYS n 1 120 LYS n 1 121 GLY n 1 122 THR n 1 123 GLU n 1 124 ASN n 1 125 GLU n 1 126 ASP n 1 127 VAL n 1 128 ARG n 1 129 CYS n 1 130 LYS n 1 131 GLN n 1 132 CYS n 1 133 ALA n 1 134 ARG n 1 135 GLY n 1 136 THR n 1 137 PHE n 1 138 SER n 1 139 ASP n 1 140 VAL n 1 141 PRO n 1 142 SER n 1 143 SER n 1 144 VAL n 1 145 MET n 1 146 LYS n 1 147 CYS n 1 148 LYS n 1 149 ALA n 1 150 HIS n 1 151 THR n 1 152 ASP n 1 153 CYS n 1 154 LEU n 1 155 GLY n 1 156 GLN n 1 157 ASN n 1 158 LEU n 1 159 GLU n 1 160 VAL n 1 161 VAL n 1 162 LYS n 1 163 PRO n 1 164 GLY n 1 165 THR n 1 166 LYS n 1 167 GLU n 1 168 THR n 1 169 ASP n 1 170 ASN n 1 171 VAL n 1 172 CYS n 1 173 GLY n 1 174 MET n 1 175 ARG n 1 176 LEU n 1 177 PHE n 1 178 PHE n 1 179 SER n 1 180 SER n 1 181 THR n 1 182 ALA n 1 183 SER n 1 184 GLY n 1 185 ARG n 1 186 GLY n 1 187 LEU n 1 188 VAL n 1 189 PRO n 1 190 ARG n 2 1 GLY n 2 2 SER n 2 3 SER n 2 4 THR n 2 5 PRO n 2 6 ASP n 2 7 ALA n 2 8 VAL n 2 9 ASP n 2 10 LYS n 2 11 TYR n 2 12 LEU n 2 13 GLU n 2 14 THR n 2 15 PRO n 2 16 GLY n 2 17 ASP n 2 18 GLU n 2 19 ASN n 2 20 GLU n 2 21 HIS n 2 22 ALA n 2 23 HIS n 2 24 PHE n 2 25 GLN n 2 26 LYS n 2 27 ALA n 2 28 LYS n 2 29 GLU n 2 30 ARG n 2 31 LEU n 2 32 GLU n 2 33 ALA n 2 34 LYS n 2 35 HIS n 2 36 ARG n 2 37 GLU n 2 38 ARG n 2 39 MET n 2 40 SER n 2 41 GLN n 2 42 VAL n 2 43 MET n 2 44 ARG n 2 45 GLU n 2 46 TRP n 2 47 GLU n 2 48 GLU n 2 49 ALA n 2 50 GLU n 2 51 ARG n 2 52 GLN n 2 53 ALA n 2 54 LYS n 2 55 ASN n 2 56 LEU n 2 57 PRO n 2 58 LYS n 2 59 ALA n 2 60 ASP n 2 61 LYS n 2 62 LYS n 2 63 ALA n 2 64 VAL n 2 65 ILE n 2 66 GLN n 2 67 HIS n 2 68 PHE n 2 69 GLN n 2 70 GLU n 2 71 LYS n 2 72 VAL n 2 73 GLU n 2 74 SER n 2 75 LEU n 2 76 GLU n 2 77 GLN n 2 78 GLU n 2 79 ALA n 2 80 ALA n 2 81 ASN n 2 82 GLU n 2 83 ARG n 2 84 GLN n 2 85 GLN n 2 86 LEU n 2 87 VAL n 2 88 GLU n 2 89 THR n 2 90 HIS n 2 91 MET n 2 92 ALA n 2 93 ARG n 2 94 VAL n 2 95 GLU n 2 96 ALA n 2 97 MET n 2 98 LEU n 2 99 ASN n 2 100 ASP n 2 101 ARG n 2 102 ARG n 2 103 ARG n 2 104 LEU n 2 105 ALA n 2 106 LEU n 2 107 GLU n 2 108 ASN n 2 109 TYR n 2 110 ILE n 2 111 THR n 2 112 ALA n 2 113 LEU n 2 114 GLN n 2 115 ALA n 2 116 VAL n 2 117 PRO n 2 118 PRO n 2 119 ARG n 2 120 PRO n 2 121 HIS n 2 122 HIS n 2 123 VAL n 2 124 PHE n 2 125 ASN n 2 126 MET n 2 127 LEU n 2 128 LYS n 2 129 LYS n 2 130 TYR n 2 131 VAL n 2 132 ARG n 2 133 ALA n 2 134 GLU n 2 135 GLN n 2 136 LYS n 2 137 ASP n 2 138 ARG n 2 139 GLN n 2 140 HIS n 2 141 THR n 2 142 LEU n 2 143 LYS n 2 144 HIS n 2 145 PHE n 2 146 GLU n 2 147 HIS n 2 148 VAL n 2 149 ARG n 2 150 MET n 2 151 VAL n 2 152 ASP n 2 153 PRO n 2 154 LYS n 2 155 LYS n 2 156 ALA n 2 157 ALA n 2 158 GLN n 2 159 ILE n 2 160 ARG n 2 161 SER n 2 162 GLN n 2 163 VAL n 2 164 MET n 2 165 THR n 2 166 HIS n 2 167 LEU n 2 168 ARG n 2 169 VAL n 2 170 ILE n 2 171 TYR n 2 172 GLU n 2 173 ARG n 2 174 MET n 2 175 ASN n 2 176 GLN n 2 177 SER n 2 178 LEU n 2 179 SER n 2 180 LEU n 2 181 LEU n 2 182 TYR n 2 183 ASN n 2 184 VAL n 2 185 PRO n 2 186 ALA n 2 187 VAL n 2 188 ALA n 2 189 GLU n 2 190 GLU n 2 191 ILE n 2 192 GLN n 2 193 ASP n 2 194 GLU n 2 195 VAL n 2 196 ASP n 2 197 GLU n 2 198 LEU n 2 199 LEU n 2 200 GLN n 2 201 LYS n 2 202 GLU n 2 203 GLN n 2 204 ASN n 2 205 TYR n 2 206 SER n 2 207 ASP n 2 208 ASP n 2 209 VAL n 2 210 LEU n 2 211 ALA n 2 212 ASN n 2 213 MET n 2 214 ILE n 2 215 SER n 2 216 GLU n 2 217 PRO n 2 218 ARG n 2 219 ILE n 2 220 SER n 2 221 TYR n 2 222 GLY n 2 223 ASN n 2 224 ASP n 2 225 ALA n 2 226 SER n 2 227 GLY n 2 228 ARG n 2 229 GLY n 2 230 LEU n 2 231 VAL n 2 232 PRO n 2 233 ARG n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 190 Mouse ? 'Tnfrsf21, Dr6' ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? KIDNEY ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 233 Mouse ? App ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 40 ? ? ? A . n A 1 2 SER 2 41 ? ? ? A . n A 1 3 GLN 3 42 ? ? ? A . n A 1 4 PRO 4 43 ? ? ? A . n A 1 5 GLU 5 44 ? ? ? A . n A 1 6 GLN 6 45 ? ? ? A . n A 1 7 LYS 7 46 ? ? ? A . n A 1 8 THR 8 47 ? ? ? A . n A 1 9 LEU 9 48 ? ? ? A . n A 1 10 SER 10 49 49 SER SER A . n A 1 11 LEU 11 50 50 LEU LEU A . n A 1 12 PRO 12 51 51 PRO PRO A . n A 1 13 GLY 13 52 52 GLY GLY A . n A 1 14 THR 14 53 53 THR THR A . n A 1 15 TYR 15 54 54 TYR TYR A . n A 1 16 ARG 16 55 55 ARG ARG A . n A 1 17 HIS 17 56 56 HIS HIS A . n A 1 18 VAL 18 57 57 VAL VAL A . n A 1 19 ASP 19 58 58 ASP ASP A . n A 1 20 ARG 20 59 59 ARG ARG A . n A 1 21 THR 21 60 60 THR THR A . n A 1 22 THR 22 61 61 THR THR A . n A 1 23 GLY 23 62 62 GLY GLY A . n A 1 24 GLN 24 63 63 GLN GLN A . n A 1 25 VAL 25 64 64 VAL VAL A . n A 1 26 LEU 26 65 65 LEU LEU A . n A 1 27 THR 27 66 66 THR THR A . n A 1 28 CYS 28 67 67 CYS CYS A . n A 1 29 ASP 29 68 68 ASP ASP A . n A 1 30 LYS 30 69 69 LYS LYS A . n A 1 31 CYS 31 70 70 CYS CYS A . n A 1 32 PRO 32 71 71 PRO PRO A . n A 1 33 ALA 33 72 72 ALA ALA A . n A 1 34 GLY 34 73 73 GLY GLY A . n A 1 35 THR 35 74 74 THR THR A . n A 1 36 TYR 36 75 75 TYR TYR A . n A 1 37 VAL 37 76 76 VAL VAL A . n A 1 38 SER 38 77 77 SER SER A . n A 1 39 GLU 39 78 78 GLU GLU A . n A 1 40 HIS 40 79 79 HIS HIS A . n A 1 41 CYS 41 80 80 CYS CYS A . n A 1 42 THR 42 81 81 THR THR A . n A 1 43 ASN 43 82 82 ASN ASN A . n A 1 44 MET 44 83 83 MET MET A . n A 1 45 SER 45 84 84 SER SER A . n A 1 46 LEU 46 85 85 LEU LEU A . n A 1 47 ARG 47 86 86 ARG ARG A . n A 1 48 VAL 48 87 87 VAL VAL A . n A 1 49 CYS 49 88 88 CYS CYS A . n A 1 50 SER 50 89 89 SER SER A . n A 1 51 SER 51 90 90 SER SER A . n A 1 52 CYS 52 91 91 CYS CYS A . n A 1 53 PRO 53 92 92 PRO PRO A . n A 1 54 ALA 54 93 93 ALA ALA A . n A 1 55 GLY 55 94 94 GLY GLY A . n A 1 56 THR 56 95 95 THR THR A . n A 1 57 PHE 57 96 96 PHE PHE A . n A 1 58 THR 58 97 97 THR THR A . n A 1 59 ARG 59 98 98 ARG ARG A . n A 1 60 HIS 60 99 99 HIS HIS A . n A 1 61 GLU 61 100 100 GLU GLU A . n A 1 62 ASN 62 101 101 ASN ASN A . n A 1 63 GLY 63 102 102 GLY GLY A . n A 1 64 ILE 64 103 103 ILE ILE A . n A 1 65 GLU 65 104 104 GLU GLU A . n A 1 66 ARG 66 105 105 ARG ARG A . n A 1 67 CYS 67 106 106 CYS CYS A . n A 1 68 HIS 68 107 107 HIS HIS A . n A 1 69 ASP 69 108 108 ASP ASP A . n A 1 70 CYS 70 109 109 CYS CYS A . n A 1 71 SER 71 110 110 SER SER A . n A 1 72 GLN 72 111 111 GLN GLN A . n A 1 73 PRO 73 112 112 PRO PRO A . n A 1 74 CYS 74 113 113 CYS CYS A . n A 1 75 PRO 75 114 114 PRO PRO A . n A 1 76 TRP 76 115 115 TRP TRP A . n A 1 77 PRO 77 116 116 PRO PRO A . n A 1 78 MET 78 117 117 MET MET A . n A 1 79 ILE 79 118 118 ILE ILE A . n A 1 80 GLU 80 119 119 GLU GLU A . n A 1 81 ARG 81 120 120 ARG ARG A . n A 1 82 LEU 82 121 121 LEU LEU A . n A 1 83 PRO 83 122 122 PRO PRO A . n A 1 84 CYS 84 123 123 CYS CYS A . n A 1 85 ALA 85 124 124 ALA ALA A . n A 1 86 ALA 86 125 125 ALA ALA A . n A 1 87 LEU 87 126 126 LEU LEU A . n A 1 88 THR 88 127 127 THR THR A . n A 1 89 ASP 89 128 128 ASP ASP A . n A 1 90 ARG 90 129 129 ARG ARG A . n A 1 91 GLU 91 130 130 GLU GLU A . n A 1 92 CYS 92 131 131 CYS CYS A . n A 1 93 ILE 93 132 132 ILE ILE A . n A 1 94 CYS 94 133 133 CYS CYS A . n A 1 95 PRO 95 134 134 PRO PRO A . n A 1 96 PRO 96 135 135 PRO PRO A . n A 1 97 GLY 97 136 136 GLY GLY A . n A 1 98 MET 98 137 137 MET MET A . n A 1 99 TYR 99 138 138 TYR TYR A . n A 1 100 GLN 100 139 139 GLN ALA A . n A 1 101 SER 101 140 140 SER SER A . n A 1 102 ASN 102 141 141 ASN ASN A . n A 1 103 GLY 103 142 142 GLY GLY A . n A 1 104 THR 104 143 143 THR THR A . n A 1 105 CYS 105 144 144 CYS CYS A . n A 1 106 ALA 106 145 145 ALA ALA A . n A 1 107 PRO 107 146 146 PRO PRO A . n A 1 108 HIS 108 147 147 HIS HIS A . n A 1 109 THR 109 148 148 THR THR A . n A 1 110 VAL 110 149 149 VAL VAL A . n A 1 111 CYS 111 150 150 CYS CYS A . n A 1 112 PRO 112 151 151 PRO PRO A . n A 1 113 VAL 113 152 152 VAL VAL A . n A 1 114 GLY 114 153 153 GLY GLY A . n A 1 115 TRP 115 154 154 TRP TRP A . n A 1 116 GLY 116 155 155 GLY GLY A . n A 1 117 VAL 117 156 156 VAL VAL A . n A 1 118 ARG 118 157 157 ARG ARG A . n A 1 119 LYS 119 158 158 LYS LYS A . n A 1 120 LYS 120 159 159 LYS LYS A . n A 1 121 GLY 121 160 160 GLY GLY A . n A 1 122 THR 122 161 161 THR THR A . n A 1 123 GLU 123 162 162 GLU GLU A . n A 1 124 ASN 124 163 163 ASN ASN A . n A 1 125 GLU 125 164 164 GLU GLU A . n A 1 126 ASP 126 165 165 ASP ASP A . n A 1 127 VAL 127 166 166 VAL VAL A . n A 1 128 ARG 128 167 167 ARG ARG A . n A 1 129 CYS 129 168 168 CYS CYS A . n A 1 130 LYS 130 169 169 LYS LYS A . n A 1 131 GLN 131 170 170 GLN GLN A . n A 1 132 CYS 132 171 171 CYS CYS A . n A 1 133 ALA 133 172 172 ALA ALA A . n A 1 134 ARG 134 173 173 ARG ARG A . n A 1 135 GLY 135 174 174 GLY GLY A . n A 1 136 THR 136 175 175 THR THR A . n A 1 137 PHE 137 176 176 PHE PHE A . n A 1 138 SER 138 177 177 SER SER A . n A 1 139 ASP 139 178 178 ASP ASP A . n A 1 140 VAL 140 179 179 VAL VAL A . n A 1 141 PRO 141 180 180 PRO PRO A . n A 1 142 SER 142 181 181 SER SER A . n A 1 143 SER 143 182 182 SER SER A . n A 1 144 VAL 144 183 183 VAL VAL A . n A 1 145 MET 145 184 184 MET MET A . n A 1 146 LYS 146 185 185 LYS LYS A . n A 1 147 CYS 147 186 186 CYS CYS A . n A 1 148 LYS 148 187 187 LYS LYS A . n A 1 149 ALA 149 188 188 ALA ALA A . n A 1 150 HIS 150 189 189 HIS HIS A . n A 1 151 THR 151 190 190 THR THR A . n A 1 152 ASP 152 191 191 ASP ASP A . n A 1 153 CYS 153 192 192 CYS CYS A . n A 1 154 LEU 154 193 193 LEU LEU A . n A 1 155 GLY 155 194 194 GLY GLY A . n A 1 156 GLN 156 195 195 GLN GLN A . n A 1 157 ASN 157 196 196 ASN ASN A . n A 1 158 LEU 158 197 197 LEU LEU A . n A 1 159 GLU 159 198 198 GLU GLU A . n A 1 160 VAL 160 199 199 VAL VAL A . n A 1 161 VAL 161 200 200 VAL VAL A . n A 1 162 LYS 162 201 201 LYS LYS A . n A 1 163 PRO 163 202 202 PRO PRO A . n A 1 164 GLY 164 203 203 GLY GLY A . n A 1 165 THR 165 204 204 THR THR A . n A 1 166 LYS 166 205 205 LYS LYS A . n A 1 167 GLU 167 206 206 GLU GLU A . n A 1 168 THR 168 207 207 THR THR A . n A 1 169 ASP 169 208 208 ASP ASP A . n A 1 170 ASN 170 209 209 ASN ASN A . n A 1 171 VAL 171 210 210 VAL VAL A . n A 1 172 CYS 172 211 211 CYS CYS A . n A 1 173 GLY 173 212 212 GLY GLY A . n A 1 174 MET 174 213 213 MET MET A . n A 1 175 ARG 175 214 214 ARG ARG A . n A 1 176 LEU 176 215 215 LEU LEU A . n A 1 177 PHE 177 216 216 PHE ALA A . n A 1 178 PHE 178 217 ? ? ? A . n A 1 179 SER 179 218 ? ? ? A . n A 1 180 SER 180 219 ? ? ? A . n A 1 181 THR 181 220 ? ? ? A . n A 1 182 ALA 182 221 ? ? ? A . n A 1 183 SER 183 222 ? ? ? A . n A 1 184 GLY 184 223 ? ? ? A . n A 1 185 ARG 185 224 ? ? ? A . n A 1 186 GLY 186 225 ? ? ? A . n A 1 187 LEU 187 226 ? ? ? A . n A 1 188 VAL 188 227 ? ? ? A . n A 1 189 PRO 189 228 ? ? ? A . n A 1 190 ARG 190 229 ? ? ? A . n B 2 1 GLY 1 293 ? ? ? B . n B 2 2 SER 2 294 ? ? ? B . n B 2 3 SER 3 295 ? ? ? B . n B 2 4 THR 4 296 ? ? ? B . n B 2 5 PRO 5 297 ? ? ? B . n B 2 6 ASP 6 298 ? ? ? B . n B 2 7 ALA 7 299 ? ? ? B . n B 2 8 VAL 8 300 ? ? ? B . n B 2 9 ASP 9 301 ? ? ? B . n B 2 10 LYS 10 302 ? ? ? B . n B 2 11 TYR 11 303 ? ? ? B . n B 2 12 LEU 12 304 ? ? ? B . n B 2 13 GLU 13 305 ? ? ? B . n B 2 14 THR 14 306 306 THR THR B . n B 2 15 PRO 15 307 307 PRO PRO B . n B 2 16 GLY 16 308 308 GLY GLY B . n B 2 17 ASP 17 309 309 ASP ASP B . n B 2 18 GLU 18 310 310 GLU GLU B . n B 2 19 ASN 19 311 311 ASN ASN B . n B 2 20 GLU 20 312 312 GLU GLU B . n B 2 21 HIS 21 313 313 HIS HIS B . n B 2 22 ALA 22 314 314 ALA ALA B . n B 2 23 HIS 23 315 315 HIS HIS B . n B 2 24 PHE 24 316 316 PHE PHE B . n B 2 25 GLN 25 317 317 GLN GLN B . n B 2 26 LYS 26 318 318 LYS LYS B . n B 2 27 ALA 27 319 319 ALA ALA B . n B 2 28 LYS 28 320 320 LYS LYS B . n B 2 29 GLU 29 321 321 GLU GLU B . n B 2 30 ARG 30 322 322 ARG ARG B . n B 2 31 LEU 31 323 323 LEU LEU B . n B 2 32 GLU 32 324 324 GLU GLU B . n B 2 33 ALA 33 325 325 ALA ALA B . n B 2 34 LYS 34 326 326 LYS LYS B . n B 2 35 HIS 35 327 327 HIS HIS B . n B 2 36 ARG 36 328 328 ARG ARG B . n B 2 37 GLU 37 329 329 GLU GLU B . n B 2 38 ARG 38 330 330 ARG ARG B . n B 2 39 MET 39 331 331 MET MET B . n B 2 40 SER 40 332 332 SER SER B . n B 2 41 GLN 41 333 333 GLN GLN B . n B 2 42 VAL 42 334 334 VAL VAL B . n B 2 43 MET 43 335 335 MET MET B . n B 2 44 ARG 44 336 336 ARG ARG B . n B 2 45 GLU 45 337 337 GLU GLU B . n B 2 46 TRP 46 338 338 TRP TRP B . n B 2 47 GLU 47 339 339 GLU GLU B . n B 2 48 GLU 48 340 340 GLU GLU B . n B 2 49 ALA 49 341 341 ALA ALA B . n B 2 50 GLU 50 342 342 GLU GLU B . n B 2 51 ARG 51 343 343 ARG ARG B . n B 2 52 GLN 52 344 344 GLN GLN B . n B 2 53 ALA 53 345 345 ALA ALA B . n B 2 54 LYS 54 346 346 LYS LYS B . n B 2 55 ASN 55 347 347 ASN ASN B . n B 2 56 LEU 56 348 348 LEU LEU B . n B 2 57 PRO 57 349 349 PRO PRO B . n B 2 58 LYS 58 350 350 LYS LYS B . n B 2 59 ALA 59 351 351 ALA ALA B . n B 2 60 ASP 60 352 352 ASP ASP B . n B 2 61 LYS 61 353 353 LYS LYS B . n B 2 62 LYS 62 354 354 LYS LYS B . n B 2 63 ALA 63 355 355 ALA ALA B . n B 2 64 VAL 64 356 356 VAL VAL B . n B 2 65 ILE 65 357 357 ILE ILE B . n B 2 66 GLN 66 358 358 GLN GLN B . n B 2 67 HIS 67 359 359 HIS HIS B . n B 2 68 PHE 68 360 360 PHE PHE B . n B 2 69 GLN 69 361 361 GLN GLN B . n B 2 70 GLU 70 362 362 GLU GLU B . n B 2 71 LYS 71 363 363 LYS LYS B . n B 2 72 VAL 72 364 364 VAL VAL B . n B 2 73 GLU 73 365 365 GLU GLU B . n B 2 74 SER 74 366 366 SER SER B . n B 2 75 LEU 75 367 367 LEU LEU B . n B 2 76 GLU 76 368 368 GLU GLU B . n B 2 77 GLN 77 369 369 GLN GLN B . n B 2 78 GLU 78 370 370 GLU GLU B . n B 2 79 ALA 79 371 371 ALA ALA B . n B 2 80 ALA 80 372 372 ALA ALA B . n B 2 81 ASN 81 373 373 ASN ASN B . n B 2 82 GLU 82 374 374 GLU GLU B . n B 2 83 ARG 83 375 375 ARG ARG B . n B 2 84 GLN 84 376 376 GLN GLN B . n B 2 85 GLN 85 377 377 GLN GLN B . n B 2 86 LEU 86 378 378 LEU LEU B . n B 2 87 VAL 87 379 379 VAL VAL B . n B 2 88 GLU 88 380 380 GLU GLU B . n B 2 89 THR 89 381 381 THR THR B . n B 2 90 HIS 90 382 382 HIS HIS B . n B 2 91 MET 91 383 383 MET MET B . n B 2 92 ALA 92 384 384 ALA ALA B . n B 2 93 ARG 93 385 385 ARG ARG B . n B 2 94 VAL 94 386 386 VAL VAL B . n B 2 95 GLU 95 387 387 GLU GLU B . n B 2 96 ALA 96 388 388 ALA ALA B . n B 2 97 MET 97 389 389 MET MET B . n B 2 98 LEU 98 390 390 LEU LEU B . n B 2 99 ASN 99 391 391 ASN ASN B . n B 2 100 ASP 100 392 392 ASP ASP B . n B 2 101 ARG 101 393 393 ARG ARG B . n B 2 102 ARG 102 394 394 ARG ARG B . n B 2 103 ARG 103 395 395 ARG ARG B . n B 2 104 LEU 104 396 396 LEU LEU B . n B 2 105 ALA 105 397 397 ALA ALA B . n B 2 106 LEU 106 398 398 LEU LEU B . n B 2 107 GLU 107 399 399 GLU GLU B . n B 2 108 ASN 108 400 400 ASN ASN B . n B 2 109 TYR 109 401 401 TYR TYR B . n B 2 110 ILE 110 402 402 ILE ILE B . n B 2 111 THR 111 403 403 THR THR B . n B 2 112 ALA 112 404 404 ALA ALA B . n B 2 113 LEU 113 405 405 LEU LEU B . n B 2 114 GLN 114 406 406 GLN GLN B . n B 2 115 ALA 115 407 407 ALA ALA B . n B 2 116 VAL 116 408 408 VAL VAL B . n B 2 117 PRO 117 409 409 PRO PRO B . n B 2 118 PRO 118 410 410 PRO PRO B . n B 2 119 ARG 119 411 411 ARG ARG B . n B 2 120 PRO 120 412 412 PRO PRO B . n B 2 121 HIS 121 413 413 HIS HIS B . n B 2 122 HIS 122 414 414 HIS HIS B . n B 2 123 VAL 123 415 415 VAL VAL B . n B 2 124 PHE 124 416 416 PHE PHE B . n B 2 125 ASN 125 417 417 ASN ASN B . n B 2 126 MET 126 418 418 MET MET B . n B 2 127 LEU 127 419 419 LEU LEU B . n B 2 128 LYS 128 420 420 LYS LYS B . n B 2 129 LYS 129 421 421 LYS LYS B . n B 2 130 TYR 130 422 422 TYR TYR B . n B 2 131 VAL 131 423 423 VAL VAL B . n B 2 132 ARG 132 424 424 ARG ARG B . n B 2 133 ALA 133 425 425 ALA ALA B . n B 2 134 GLU 134 426 426 GLU GLU B . n B 2 135 GLN 135 427 427 GLN GLN B . n B 2 136 LYS 136 428 428 LYS LYS B . n B 2 137 ASP 137 429 429 ASP ASP B . n B 2 138 ARG 138 430 430 ARG ARG B . n B 2 139 GLN 139 431 431 GLN GLN B . n B 2 140 HIS 140 432 432 HIS HIS B . n B 2 141 THR 141 433 433 THR THR B . n B 2 142 LEU 142 434 434 LEU LEU B . n B 2 143 LYS 143 435 435 LYS LYS B . n B 2 144 HIS 144 436 436 HIS HIS B . n B 2 145 PHE 145 437 437 PHE PHE B . n B 2 146 GLU 146 438 438 GLU GLU B . n B 2 147 HIS 147 439 439 HIS HIS B . n B 2 148 VAL 148 440 440 VAL VAL B . n B 2 149 ARG 149 441 441 ARG ARG B . n B 2 150 MET 150 442 442 MET MET B . n B 2 151 VAL 151 443 443 VAL VAL B . n B 2 152 ASP 152 444 444 ASP ASP B . n B 2 153 PRO 153 445 445 PRO PRO B . n B 2 154 LYS 154 446 446 LYS LYS B . n B 2 155 LYS 155 447 447 LYS LYS B . n B 2 156 ALA 156 448 448 ALA ALA B . n B 2 157 ALA 157 449 449 ALA ALA B . n B 2 158 GLN 158 450 450 GLN GLN B . n B 2 159 ILE 159 451 451 ILE ILE B . n B 2 160 ARG 160 452 452 ARG ARG B . n B 2 161 SER 161 453 453 SER SER B . n B 2 162 GLN 162 454 454 GLN GLN B . n B 2 163 VAL 163 455 455 VAL VAL B . n B 2 164 MET 164 456 456 MET MET B . n B 2 165 THR 165 457 457 THR THR B . n B 2 166 HIS 166 458 458 HIS HIS B . n B 2 167 LEU 167 459 459 LEU LEU B . n B 2 168 ARG 168 460 460 ARG ARG B . n B 2 169 VAL 169 461 461 VAL VAL B . n B 2 170 ILE 170 462 462 ILE ILE B . n B 2 171 TYR 171 463 463 TYR TYR B . n B 2 172 GLU 172 464 464 GLU GLU B . n B 2 173 ARG 173 465 465 ARG ARG B . n B 2 174 MET 174 466 466 MET MET B . n B 2 175 ASN 175 467 467 ASN ASN B . n B 2 176 GLN 176 468 468 GLN GLN B . n B 2 177 SER 177 469 469 SER SER B . n B 2 178 LEU 178 470 470 LEU LEU B . n B 2 179 SER 179 471 471 SER SER B . n B 2 180 LEU 180 472 472 LEU LEU B . n B 2 181 LEU 181 473 473 LEU LEU B . n B 2 182 TYR 182 474 474 TYR TYR B . n B 2 183 ASN 183 475 475 ASN ASN B . n B 2 184 VAL 184 476 476 VAL VAL B . n B 2 185 PRO 185 477 477 PRO PRO B . n B 2 186 ALA 186 478 478 ALA ALA B . n B 2 187 VAL 187 479 479 VAL VAL B . n B 2 188 ALA 188 480 480 ALA ALA B . n B 2 189 GLU 189 481 481 GLU GLU B . n B 2 190 GLU 190 482 482 GLU GLU B . n B 2 191 ILE 191 483 483 ILE ILE B . n B 2 192 GLN 192 484 484 GLN GLN B . n B 2 193 ASP 193 485 485 ASP ASP B . n B 2 194 GLU 194 486 486 GLU GLU B . n B 2 195 VAL 195 487 487 VAL VAL B . n B 2 196 ASP 196 488 488 ASP ASP B . n B 2 197 GLU 197 489 489 GLU GLU B . n B 2 198 LEU 198 490 490 LEU LEU B . n B 2 199 LEU 199 491 491 LEU LEU B . n B 2 200 GLN 200 492 492 GLN GLN B . n B 2 201 LYS 201 493 493 LYS LYS B . n B 2 202 GLU 202 494 494 GLU GLU B . n B 2 203 GLN 203 495 495 GLN GLN B . n B 2 204 ASN 204 496 496 ASN ASN B . n B 2 205 TYR 205 497 497 TYR TYR B . n B 2 206 SER 206 498 498 SER SER B . n B 2 207 ASP 207 499 499 ASP ASP B . n B 2 208 ASP 208 500 500 ASP ASP B . n B 2 209 VAL 209 501 501 VAL VAL B . n B 2 210 LEU 210 502 502 LEU LEU B . n B 2 211 ALA 211 503 503 ALA ALA B . n B 2 212 ASN 212 504 504 ASN ASN B . n B 2 213 MET 213 505 505 MET MET B . n B 2 214 ILE 214 506 506 ILE ILE B . n B 2 215 SER 215 507 507 SER SER B . n B 2 216 GLU 216 508 ? ? ? B . n B 2 217 PRO 217 509 ? ? ? B . n B 2 218 ARG 218 510 ? ? ? B . n B 2 219 ILE 219 511 ? ? ? B . n B 2 220 SER 220 512 ? ? ? B . n B 2 221 TYR 221 513 ? ? ? B . n B 2 222 GLY 222 514 ? ? ? B . n B 2 223 ASN 223 515 ? ? ? B . n B 2 224 ASP 224 516 ? ? ? B . n B 2 225 ALA 225 517 ? ? ? B . n B 2 226 SER 226 518 ? ? ? B . n B 2 227 GLY 227 519 ? ? ? B . n B 2 228 ARG 228 520 ? ? ? B . n B 2 229 GLY 229 521 ? ? ? B . n B 2 230 LEU 230 522 ? ? ? B . n B 2 231 VAL 231 523 ? ? ? B . n B 2 232 PRO 232 524 ? ? ? B . n B 2 233 ARG 233 525 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 301 821 NAG NAG A . D 4 MG 1 302 1 MG MG A . E 3 NAG 1 601 4671 NAG NAG B . F 5 HOH 1 401 8 HOH HOH A . F 5 HOH 2 402 26 HOH HOH A . F 5 HOH 3 403 28 HOH HOH A . F 5 HOH 4 404 54 HOH HOH A . F 5 HOH 5 405 50 HOH HOH A . F 5 HOH 6 406 5 HOH HOH A . F 5 HOH 7 407 53 HOH HOH A . F 5 HOH 8 408 81 HOH HOH A . F 5 HOH 9 409 32 HOH HOH A . F 5 HOH 10 410 23 HOH HOH A . F 5 HOH 11 411 65 HOH HOH A . F 5 HOH 12 412 70 HOH HOH A . F 5 HOH 13 413 84 HOH HOH A . F 5 HOH 14 414 93 HOH HOH A . F 5 HOH 15 415 1 HOH HOH A . F 5 HOH 16 416 2 HOH HOH A . F 5 HOH 17 417 3 HOH HOH A . F 5 HOH 18 418 4 HOH HOH A . F 5 HOH 19 419 7 HOH HOH A . F 5 HOH 20 420 9 HOH HOH A . F 5 HOH 21 421 10 HOH HOH A . F 5 HOH 22 422 18 HOH HOH A . F 5 HOH 23 423 19 HOH HOH A . F 5 HOH 24 424 20 HOH HOH A . F 5 HOH 25 425 21 HOH HOH A . F 5 HOH 26 426 22 HOH HOH A . F 5 HOH 27 427 34 HOH HOH A . F 5 HOH 28 428 36 HOH HOH A . F 5 HOH 29 429 38 HOH HOH A . F 5 HOH 30 430 40 HOH HOH A . F 5 HOH 31 431 43 HOH HOH A . F 5 HOH 32 432 48 HOH HOH A . F 5 HOH 33 433 51 HOH HOH A . F 5 HOH 34 434 56 HOH HOH A . F 5 HOH 35 435 57 HOH HOH A . F 5 HOH 36 436 58 HOH HOH A . F 5 HOH 37 437 59 HOH HOH A . F 5 HOH 38 438 60 HOH HOH A . F 5 HOH 39 439 61 HOH HOH A . F 5 HOH 40 440 66 HOH HOH A . F 5 HOH 41 441 71 HOH HOH A . F 5 HOH 42 442 73 HOH HOH A . F 5 HOH 43 443 75 HOH HOH A . F 5 HOH 44 444 76 HOH HOH A . F 5 HOH 45 445 77 HOH HOH A . F 5 HOH 46 446 80 HOH HOH A . F 5 HOH 47 447 82 HOH HOH A . F 5 HOH 48 448 83 HOH HOH A . F 5 HOH 49 449 85 HOH HOH A . F 5 HOH 50 450 86 HOH HOH A . F 5 HOH 51 451 90 HOH HOH A . F 5 HOH 52 452 91 HOH HOH A . F 5 HOH 53 453 92 HOH HOH A . G 5 HOH 1 701 78 HOH HOH B . G 5 HOH 2 702 11 HOH HOH B . G 5 HOH 3 703 72 HOH HOH B . G 5 HOH 4 704 74 HOH HOH B . G 5 HOH 5 705 30 HOH HOH B . G 5 HOH 6 706 13 HOH HOH B . G 5 HOH 7 707 87 HOH HOH B . G 5 HOH 8 708 39 HOH HOH B . G 5 HOH 9 709 99 HOH HOH B . G 5 HOH 10 710 102 HOH HOH B . G 5 HOH 11 711 6 HOH HOH B . G 5 HOH 12 712 68 HOH HOH B . G 5 HOH 13 713 12 HOH HOH B . G 5 HOH 14 714 14 HOH HOH B . G 5 HOH 15 715 15 HOH HOH B . G 5 HOH 16 716 16 HOH HOH B . G 5 HOH 17 717 17 HOH HOH B . G 5 HOH 18 718 24 HOH HOH B . G 5 HOH 19 719 25 HOH HOH B . G 5 HOH 20 720 27 HOH HOH B . G 5 HOH 21 721 29 HOH HOH B . G 5 HOH 22 722 31 HOH HOH B . G 5 HOH 23 723 33 HOH HOH B . G 5 HOH 24 724 35 HOH HOH B . G 5 HOH 25 725 37 HOH HOH B . G 5 HOH 26 726 41 HOH HOH B . G 5 HOH 27 727 42 HOH HOH B . G 5 HOH 28 728 44 HOH HOH B . G 5 HOH 29 729 45 HOH HOH B . G 5 HOH 30 730 46 HOH HOH B . G 5 HOH 31 731 47 HOH HOH B . G 5 HOH 32 732 49 HOH HOH B . G 5 HOH 33 733 52 HOH HOH B . G 5 HOH 34 734 55 HOH HOH B . G 5 HOH 35 735 62 HOH HOH B . G 5 HOH 36 736 63 HOH HOH B . G 5 HOH 37 737 64 HOH HOH B . G 5 HOH 38 738 67 HOH HOH B . G 5 HOH 39 739 69 HOH HOH B . G 5 HOH 40 740 79 HOH HOH B . G 5 HOH 41 741 88 HOH HOH B . G 5 HOH 42 742 89 HOH HOH B . G 5 HOH 43 743 94 HOH HOH B . G 5 HOH 44 744 95 HOH HOH B . G 5 HOH 45 745 96 HOH HOH B . G 5 HOH 46 746 97 HOH HOH B . G 5 HOH 47 747 98 HOH HOH B . G 5 HOH 48 748 100 HOH HOH B . G 5 HOH 49 749 101 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 139 ? CG ? A GLN 100 CG 2 1 Y 1 A GLN 139 ? CD ? A GLN 100 CD 3 1 Y 1 A GLN 139 ? OE1 ? A GLN 100 OE1 4 1 Y 1 A GLN 139 ? NE2 ? A GLN 100 NE2 5 1 Y 1 A PHE 216 ? CG ? A PHE 177 CG 6 1 Y 1 A PHE 216 ? CD1 ? A PHE 177 CD1 7 1 Y 1 A PHE 216 ? CD2 ? A PHE 177 CD2 8 1 Y 1 A PHE 216 ? CE1 ? A PHE 177 CE1 9 1 Y 1 A PHE 216 ? CE2 ? A PHE 177 CE2 10 1 Y 1 A PHE 216 ? CZ ? A PHE 177 CZ # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(phenix.refine: dev_1760)' 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 3 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 4YN0 _cell.details ? _cell.formula_units_Z ? _cell.length_a 67.320 _cell.length_a_esd ? _cell.length_b 67.320 _cell.length_b_esd ? _cell.length_c 226.229 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YN0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4YN0 _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.09 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 60.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100mM Tris pH 8.6, 18% PEG 8000' _exptl_crystal_grow.pdbx_pH_range 8.6 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-08-22 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator Se _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 48.97 _reflns.entry_id 4YN0 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.2 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 29375 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.7 _reflns.pdbx_Rmerge_I_obs 0.076 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.63 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.24 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.34 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 99.7 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.652 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 63.7 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4YN0 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.2 _refine.ls_d_res_low 40.6 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 29375 _refine.ls_number_reflns_R_free 1421 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.91 _refine.ls_percent_reflns_R_free 4.84 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2269 _refine.ls_R_factor_R_free 0.2451 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2259 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.38 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details 'Random selection' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 29.18 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.33 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2937 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 102 _refine_hist.number_atoms_total 3068 _refine_hist.d_res_high 2.2 _refine_hist.d_res_low 40.6 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.019 ? 3037 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.250 ? 4082 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 16.859 ? 1170 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.056 ? 449 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 542 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.2 2.2763 . . 141 2770 100.00 . . . 0.3534 . 0.3210 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2763 2.3675 . . 148 2779 100.00 . . . 0.3307 . 0.2889 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3675 2.4752 . . 142 2808 100.00 . . . 0.3273 . 0.2777 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4752 2.6057 . . 145 2780 100.00 . . . 0.2810 . 0.2590 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6057 2.7689 . . 168 2776 100.00 . . . 0.2746 . 0.2646 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7689 2.9826 . . 123 2803 100.00 . . . 0.3331 . 0.2582 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9826 3.2827 . . 132 2808 100.00 . . . 0.2930 . 0.2587 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2827 3.7574 . . 137 2820 100.00 . . . 0.2486 . 0.2381 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.7574 4.7328 . . 128 2807 100.00 . . . 0.2105 . 0.1942 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.7328 40.6013 . . 157 2803 100.00 . . . 0.1948 . 0.1883 . . . . . . . . . . # _struct.entry_id 4YN0 _struct.title 'Crystal structure of APP E2 domain in complex with DR6 CRD domain' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4YN0 _struct_keywords.text 'Alzheimer, Neuron pruning, Amyloid precursor protein, Apoptosis-Cell Adhesion complex' _struct_keywords.pdbx_keywords 'Apoptosis/Cell Adhesion' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 3 ? F N N 5 ? G N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP TNR21_MOUSE Q9EPU5 ? 1 ;QPEQKTLSLPGTYRHVDRTTGQVLTCDKCPAGTYVSEHCTNMSLRVCSSCPAGTFTRHENGIERCHDCSQPCPWPMIERL PCAALTDRECICPPGMYQSNGTCAPHTVCPVGWGVRKKGTENEDVRCKQCARGTFSDVPSSVMKCKAHTDCLGQNLEVVK PGTKETDNVCGMRLFFSST ; 42 2 UNP A4_MOUSE P12023 ? 2 ;STPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANE RQQLVETHMARVEAMLNDRRRLALENYITALQAVPPRPHHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQ VMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDA ; 370 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4YN0 A 3 ? 181 ? Q9EPU5 42 ? 220 ? 42 220 2 2 4YN0 B 3 ? 225 ? P12023 370 ? 592 ? 295 517 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4YN0 GLY A 1 ? UNP Q9EPU5 ? ? 'expression tag' 40 1 1 4YN0 SER A 2 ? UNP Q9EPU5 ? ? 'expression tag' 41 2 1 4YN0 ALA A 182 ? UNP Q9EPU5 ? ? 'expression tag' 221 3 1 4YN0 SER A 183 ? UNP Q9EPU5 ? ? 'expression tag' 222 4 1 4YN0 GLY A 184 ? UNP Q9EPU5 ? ? 'expression tag' 223 5 1 4YN0 ARG A 185 ? UNP Q9EPU5 ? ? 'expression tag' 224 6 1 4YN0 GLY A 186 ? UNP Q9EPU5 ? ? 'expression tag' 225 7 1 4YN0 LEU A 187 ? UNP Q9EPU5 ? ? 'expression tag' 226 8 1 4YN0 VAL A 188 ? UNP Q9EPU5 ? ? 'expression tag' 227 9 1 4YN0 PRO A 189 ? UNP Q9EPU5 ? ? 'expression tag' 228 10 1 4YN0 ARG A 190 ? UNP Q9EPU5 ? ? 'expression tag' 229 11 2 4YN0 GLY B 1 ? UNP P12023 ? ? 'expression tag' 293 12 2 4YN0 SER B 2 ? UNP P12023 ? ? 'expression tag' 294 13 2 4YN0 SER B 226 ? UNP P12023 ? ? 'expression tag' 518 14 2 4YN0 GLY B 227 ? UNP P12023 ? ? 'expression tag' 519 15 2 4YN0 ARG B 228 ? UNP P12023 ? ? 'expression tag' 520 16 2 4YN0 GLY B 229 ? UNP P12023 ? ? 'expression tag' 521 17 2 4YN0 LEU B 230 ? UNP P12023 ? ? 'expression tag' 522 18 2 4YN0 VAL B 231 ? UNP P12023 ? ? 'expression tag' 523 19 2 4YN0 PRO B 232 ? UNP P12023 ? ? 'expression tag' 524 20 2 4YN0 ARG B 233 ? UNP P12023 ? ? 'expression tag' 525 21 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 CYS A 153 ? ASN A 157 ? CYS A 192 ASN A 196 5 ? 5 HELX_P HELX_P2 AA2 PRO B 15 ? ALA B 53 ? PRO B 307 ALA B 345 1 ? 39 HELX_P HELX_P3 AA3 PRO B 57 ? ALA B 115 ? PRO B 349 ALA B 407 1 ? 59 HELX_P HELX_P4 AA4 ARG B 119 ? ASP B 152 ? ARG B 411 ASP B 444 1 ? 34 HELX_P HELX_P5 AA5 ASP B 152 ? VAL B 184 ? ASP B 444 VAL B 476 1 ? 33 HELX_P HELX_P6 AA6 VAL B 184 ? SER B 215 ? VAL B 476 SER B 507 1 ? 32 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 41 SG ? ? A CYS 67 A CYS 80 1_555 ? ? ? ? ? ? ? 2.067 ? ? disulf2 disulf ? ? A CYS 31 SG ? ? ? 1_555 A CYS 49 SG ? ? A CYS 70 A CYS 88 1_555 ? ? ? ? ? ? ? 2.024 ? ? disulf3 disulf ? ? A CYS 52 SG ? ? ? 1_555 A CYS 67 SG ? ? A CYS 91 A CYS 106 1_555 ? ? ? ? ? ? ? 2.082 ? ? disulf4 disulf ? ? A CYS 70 SG ? ? ? 1_555 A CYS 84 SG ? ? A CYS 109 A CYS 123 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf5 disulf ? ? A CYS 74 SG ? ? ? 1_555 A CYS 92 SG ? ? A CYS 113 A CYS 131 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf6 disulf ? ? A CYS 94 SG ? ? ? 1_555 A CYS 105 SG ? ? A CYS 133 A CYS 144 1_555 ? ? ? ? ? ? ? 2.062 ? ? disulf7 disulf ? ? A CYS 111 SG ? ? ? 1_555 A CYS 129 SG ? ? A CYS 150 A CYS 168 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf8 disulf ? ? A CYS 132 SG ? ? ? 1_555 A CYS 147 SG ? ? A CYS 171 A CYS 186 1_555 ? ? ? ? ? ? ? 2.096 ? ? disulf9 disulf ? ? A CYS 153 SG ? ? ? 1_555 A CYS 172 SG ? ? A CYS 192 A CYS 211 1_555 ? ? ? ? ? ? ? 2.060 ? ? covale1 covale one ? A ASN 43 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 82 A NAG 301 1_555 ? ? ? ? ? ? ? 1.447 ? N-Glycosylation covale2 covale one ? B ASN 175 ND2 ? ? ? 1_555 E NAG . C1 ? ? B ASN 467 B NAG 601 1_555 ? ? ? ? ? ? ? 1.557 ? N-Glycosylation metalc1 metalc ? ? A CYS 111 O ? ? ? 1_555 D MG . MG ? ? A CYS 150 A MG 302 1_555 ? ? ? ? ? ? ? 2.546 ? ? metalc2 metalc ? ? A PRO 112 O ? ? ? 1_555 D MG . MG ? ? A PRO 151 A MG 302 1_555 ? ? ? ? ? ? ? 2.712 ? ? metalc3 metalc ? ? A TRP 115 O ? ? ? 1_555 D MG . MG ? ? A TRP 154 A MG 302 1_555 ? ? ? ? ? ? ? 2.279 ? ? metalc4 metalc ? ? A SER 138 OG ? ? ? 1_555 D MG . MG ? ? A SER 177 A MG 302 1_555 ? ? ? ? ? ? ? 2.251 ? ? metalc5 metalc ? ? A VAL 140 O ? ? ? 1_555 D MG . MG ? ? A VAL 179 A MG 302 1_555 ? ? ? ? ? ? ? 2.271 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 302 A HOH 441 1_555 ? ? ? ? ? ? ? 2.224 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A CYS 111 ? A CYS 150 ? 1_555 MG ? D MG . ? A MG 302 ? 1_555 O ? A PRO 112 ? A PRO 151 ? 1_555 67.7 ? 2 O ? A CYS 111 ? A CYS 150 ? 1_555 MG ? D MG . ? A MG 302 ? 1_555 O ? A TRP 115 ? A TRP 154 ? 1_555 105.3 ? 3 O ? A PRO 112 ? A PRO 151 ? 1_555 MG ? D MG . ? A MG 302 ? 1_555 O ? A TRP 115 ? A TRP 154 ? 1_555 73.4 ? 4 O ? A CYS 111 ? A CYS 150 ? 1_555 MG ? D MG . ? A MG 302 ? 1_555 OG ? A SER 138 ? A SER 177 ? 1_555 172.3 ? 5 O ? A PRO 112 ? A PRO 151 ? 1_555 MG ? D MG . ? A MG 302 ? 1_555 OG ? A SER 138 ? A SER 177 ? 1_555 112.8 ? 6 O ? A TRP 115 ? A TRP 154 ? 1_555 MG ? D MG . ? A MG 302 ? 1_555 OG ? A SER 138 ? A SER 177 ? 1_555 82.0 ? 7 O ? A CYS 111 ? A CYS 150 ? 1_555 MG ? D MG . ? A MG 302 ? 1_555 O ? A VAL 140 ? A VAL 179 ? 1_555 91.0 ? 8 O ? A PRO 112 ? A PRO 151 ? 1_555 MG ? D MG . ? A MG 302 ? 1_555 O ? A VAL 140 ? A VAL 179 ? 1_555 103.9 ? 9 O ? A TRP 115 ? A TRP 154 ? 1_555 MG ? D MG . ? A MG 302 ? 1_555 O ? A VAL 140 ? A VAL 179 ? 1_555 160.5 ? 10 OG ? A SER 138 ? A SER 177 ? 1_555 MG ? D MG . ? A MG 302 ? 1_555 O ? A VAL 140 ? A VAL 179 ? 1_555 81.3 ? 11 O ? A CYS 111 ? A CYS 150 ? 1_555 MG ? D MG . ? A MG 302 ? 1_555 O ? F HOH . ? A HOH 441 ? 1_555 79.1 ? 12 O ? A PRO 112 ? A PRO 151 ? 1_555 MG ? D MG . ? A MG 302 ? 1_555 O ? F HOH . ? A HOH 441 ? 1_555 142.0 ? 13 O ? A TRP 115 ? A TRP 154 ? 1_555 MG ? D MG . ? A MG 302 ? 1_555 O ? F HOH . ? A HOH 441 ? 1_555 99.2 ? 14 OG ? A SER 138 ? A SER 177 ? 1_555 MG ? D MG . ? A MG 302 ? 1_555 O ? F HOH . ? A HOH 441 ? 1_555 102.6 ? 15 O ? A VAL 140 ? A VAL 179 ? 1_555 MG ? D MG . ? A MG 302 ? 1_555 O ? F HOH . ? A HOH 441 ? 1_555 94.4 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG C . ? ASN A 43 ? NAG A 301 ? 1_555 ASN A 82 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 2 NAG E . ? ASN B 175 ? NAG B 601 ? 1_555 ASN B 467 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 3 CYS A 28 ? CYS A 41 ? CYS A 67 ? 1_555 CYS A 80 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 31 ? CYS A 49 ? CYS A 70 ? 1_555 CYS A 88 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS A 52 ? CYS A 67 ? CYS A 91 ? 1_555 CYS A 106 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS A 70 ? CYS A 84 ? CYS A 109 ? 1_555 CYS A 123 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS A 74 ? CYS A 92 ? CYS A 113 ? 1_555 CYS A 131 ? 1_555 SG SG . . . None 'Disulfide bridge' 8 CYS A 94 ? CYS A 105 ? CYS A 133 ? 1_555 CYS A 144 ? 1_555 SG SG . . . None 'Disulfide bridge' 9 CYS A 111 ? CYS A 129 ? CYS A 150 ? 1_555 CYS A 168 ? 1_555 SG SG . . . None 'Disulfide bridge' 10 CYS A 132 ? CYS A 147 ? CYS A 171 ? 1_555 CYS A 186 ? 1_555 SG SG . . . None 'Disulfide bridge' 11 CYS A 153 ? CYS A 172 ? CYS A 192 ? 1_555 CYS A 211 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TRP 76 A . ? TRP 115 A PRO 77 A ? PRO 116 A 1 3.43 2 VAL 116 B . ? VAL 408 B PRO 117 B ? PRO 409 B 1 3.81 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? AA3 ? 2 ? AA4 ? 2 ? AA5 ? 2 ? AA6 ? 2 ? AA7 ? 2 ? AA8 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel AA6 1 2 ? anti-parallel AA7 1 2 ? anti-parallel AA8 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 14 ? VAL A 18 ? THR A 53 VAL A 57 AA1 2 VAL A 25 ? ASP A 29 ? VAL A 64 ASP A 68 AA2 1 THR A 35 ? GLU A 39 ? THR A 74 GLU A 78 AA2 2 VAL A 48 ? SER A 51 ? VAL A 87 SER A 90 AA3 1 THR A 56 ? PHE A 57 ? THR A 95 PHE A 96 AA3 2 HIS A 68 ? ASP A 69 ? HIS A 107 ASP A 108 AA4 1 ILE A 79 ? LEU A 82 ? ILE A 118 LEU A 121 AA4 2 GLU A 91 ? ILE A 93 ? GLU A 130 ILE A 132 AA5 1 MET A 98 ? SER A 101 ? MET A 137 SER A 140 AA5 2 THR A 104 ? PRO A 107 ? THR A 143 PRO A 146 AA6 1 TRP A 115 ? LYS A 119 ? TRP A 154 LYS A 158 AA6 2 ARG A 128 ? GLN A 131 ? ARG A 167 GLN A 170 AA7 1 THR A 136 ? PHE A 137 ? THR A 175 PHE A 176 AA7 2 LYS A 148 ? ALA A 149 ? LYS A 187 ALA A 188 AA8 1 GLU A 159 ? LYS A 162 ? GLU A 198 LYS A 201 AA8 2 VAL A 171 ? GLY A 173 ? VAL A 210 GLY A 212 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N HIS A 17 ? N HIS A 56 O LEU A 26 ? O LEU A 65 AA2 1 2 N GLU A 39 ? N GLU A 78 O VAL A 48 ? O VAL A 87 AA3 1 2 N PHE A 57 ? N PHE A 96 O HIS A 68 ? O HIS A 107 AA4 1 2 N ILE A 79 ? N ILE A 118 O ILE A 93 ? O ILE A 132 AA5 1 2 N SER A 101 ? N SER A 140 O THR A 104 ? O THR A 143 AA6 1 2 N ARG A 118 ? N ARG A 157 O ARG A 128 ? O ARG A 167 AA7 1 2 N PHE A 137 ? N PHE A 176 O LYS A 148 ? O LYS A 187 AA8 1 2 N LYS A 162 ? N LYS A 201 O VAL A 171 ? O VAL A 210 # _pdbx_entry_details.entry_id 4YN0 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NH2 B ARG 330 ? ? O B HOH 746 ? ? 1.93 2 1 OE2 B GLU 426 ? ? NE B ARG 465 ? ? 2.13 3 1 NH1 A ARG 86 ? ? SG A CYS 88 ? ? 2.14 4 1 O B HOH 725 ? ? O B HOH 733 ? ? 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 60 ? ? -101.56 -61.40 2 1 GLN A 111 ? ? -49.42 153.60 3 1 TRP A 115 ? ? -38.52 132.06 4 1 ASN A 141 ? ? 52.15 -119.97 5 1 ARG A 173 ? ? -38.44 130.81 6 1 THR A 204 ? ? -129.01 -166.53 7 1 MET B 442 ? ? -58.13 -70.93 8 1 ASP B 444 ? ? -157.48 70.41 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 40 ? A GLY 1 2 1 Y 1 A SER 41 ? A SER 2 3 1 Y 1 A GLN 42 ? A GLN 3 4 1 Y 1 A PRO 43 ? A PRO 4 5 1 Y 1 A GLU 44 ? A GLU 5 6 1 Y 1 A GLN 45 ? A GLN 6 7 1 Y 1 A LYS 46 ? A LYS 7 8 1 Y 1 A THR 47 ? A THR 8 9 1 Y 1 A LEU 48 ? A LEU 9 10 1 Y 1 A PHE 217 ? A PHE 178 11 1 Y 1 A SER 218 ? A SER 179 12 1 Y 1 A SER 219 ? A SER 180 13 1 Y 1 A THR 220 ? A THR 181 14 1 Y 1 A ALA 221 ? A ALA 182 15 1 Y 1 A SER 222 ? A SER 183 16 1 Y 1 A GLY 223 ? A GLY 184 17 1 Y 1 A ARG 224 ? A ARG 185 18 1 Y 1 A GLY 225 ? A GLY 186 19 1 Y 1 A LEU 226 ? A LEU 187 20 1 Y 1 A VAL 227 ? A VAL 188 21 1 Y 1 A PRO 228 ? A PRO 189 22 1 Y 1 A ARG 229 ? A ARG 190 23 1 Y 1 B GLY 293 ? B GLY 1 24 1 Y 1 B SER 294 ? B SER 2 25 1 Y 1 B SER 295 ? B SER 3 26 1 Y 1 B THR 296 ? B THR 4 27 1 Y 1 B PRO 297 ? B PRO 5 28 1 Y 1 B ASP 298 ? B ASP 6 29 1 Y 1 B ALA 299 ? B ALA 7 30 1 Y 1 B VAL 300 ? B VAL 8 31 1 Y 1 B ASP 301 ? B ASP 9 32 1 Y 1 B LYS 302 ? B LYS 10 33 1 Y 1 B TYR 303 ? B TYR 11 34 1 Y 1 B LEU 304 ? B LEU 12 35 1 Y 1 B GLU 305 ? B GLU 13 36 1 Y 1 B GLU 508 ? B GLU 216 37 1 Y 1 B PRO 509 ? B PRO 217 38 1 Y 1 B ARG 510 ? B ARG 218 39 1 Y 1 B ILE 511 ? B ILE 219 40 1 Y 1 B SER 512 ? B SER 220 41 1 Y 1 B TYR 513 ? B TYR 221 42 1 Y 1 B GLY 514 ? B GLY 222 43 1 Y 1 B ASN 515 ? B ASN 223 44 1 Y 1 B ASP 516 ? B ASP 224 45 1 Y 1 B ALA 517 ? B ALA 225 46 1 Y 1 B SER 518 ? B SER 226 47 1 Y 1 B GLY 519 ? B GLY 227 48 1 Y 1 B ARG 520 ? B ARG 228 49 1 Y 1 B GLY 521 ? B GLY 229 50 1 Y 1 B LEU 522 ? B LEU 230 51 1 Y 1 B VAL 523 ? B VAL 231 52 1 Y 1 B PRO 524 ? B PRO 232 53 1 Y 1 B ARG 525 ? B ARG 233 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 MG MG MG N N 250 NAG C1 C N R 251 NAG C2 C N R 252 NAG C3 C N R 253 NAG C4 C N S 254 NAG C5 C N R 255 NAG C6 C N N 256 NAG C7 C N N 257 NAG C8 C N N 258 NAG N2 N N N 259 NAG O1 O N N 260 NAG O3 O N N 261 NAG O4 O N N 262 NAG O5 O N N 263 NAG O6 O N N 264 NAG O7 O N N 265 NAG H1 H N N 266 NAG H2 H N N 267 NAG H3 H N N 268 NAG H4 H N N 269 NAG H5 H N N 270 NAG H61 H N N 271 NAG H62 H N N 272 NAG H81 H N N 273 NAG H82 H N N 274 NAG H83 H N N 275 NAG HN2 H N N 276 NAG HO1 H N N 277 NAG HO3 H N N 278 NAG HO4 H N N 279 NAG HO6 H N N 280 PHE N N N N 281 PHE CA C N S 282 PHE C C N N 283 PHE O O N N 284 PHE CB C N N 285 PHE CG C Y N 286 PHE CD1 C Y N 287 PHE CD2 C Y N 288 PHE CE1 C Y N 289 PHE CE2 C Y N 290 PHE CZ C Y N 291 PHE OXT O N N 292 PHE H H N N 293 PHE H2 H N N 294 PHE HA H N N 295 PHE HB2 H N N 296 PHE HB3 H N N 297 PHE HD1 H N N 298 PHE HD2 H N N 299 PHE HE1 H N N 300 PHE HE2 H N N 301 PHE HZ H N N 302 PHE HXT H N N 303 PRO N N N N 304 PRO CA C N S 305 PRO C C N N 306 PRO O O N N 307 PRO CB C N N 308 PRO CG C N N 309 PRO CD C N N 310 PRO OXT O N N 311 PRO H H N N 312 PRO HA H N N 313 PRO HB2 H N N 314 PRO HB3 H N N 315 PRO HG2 H N N 316 PRO HG3 H N N 317 PRO HD2 H N N 318 PRO HD3 H N N 319 PRO HXT H N N 320 SER N N N N 321 SER CA C N S 322 SER C C N N 323 SER O O N N 324 SER CB C N N 325 SER OG O N N 326 SER OXT O N N 327 SER H H N N 328 SER H2 H N N 329 SER HA H N N 330 SER HB2 H N N 331 SER HB3 H N N 332 SER HG H N N 333 SER HXT H N N 334 THR N N N N 335 THR CA C N S 336 THR C C N N 337 THR O O N N 338 THR CB C N R 339 THR OG1 O N N 340 THR CG2 C N N 341 THR OXT O N N 342 THR H H N N 343 THR H2 H N N 344 THR HA H N N 345 THR HB H N N 346 THR HG1 H N N 347 THR HG21 H N N 348 THR HG22 H N N 349 THR HG23 H N N 350 THR HXT H N N 351 TRP N N N N 352 TRP CA C N S 353 TRP C C N N 354 TRP O O N N 355 TRP CB C N N 356 TRP CG C Y N 357 TRP CD1 C Y N 358 TRP CD2 C Y N 359 TRP NE1 N Y N 360 TRP CE2 C Y N 361 TRP CE3 C Y N 362 TRP CZ2 C Y N 363 TRP CZ3 C Y N 364 TRP CH2 C Y N 365 TRP OXT O N N 366 TRP H H N N 367 TRP H2 H N N 368 TRP HA H N N 369 TRP HB2 H N N 370 TRP HB3 H N N 371 TRP HD1 H N N 372 TRP HE1 H N N 373 TRP HE3 H N N 374 TRP HZ2 H N N 375 TRP HZ3 H N N 376 TRP HH2 H N N 377 TRP HXT H N N 378 TYR N N N N 379 TYR CA C N S 380 TYR C C N N 381 TYR O O N N 382 TYR CB C N N 383 TYR CG C Y N 384 TYR CD1 C Y N 385 TYR CD2 C Y N 386 TYR CE1 C Y N 387 TYR CE2 C Y N 388 TYR CZ C Y N 389 TYR OH O N N 390 TYR OXT O N N 391 TYR H H N N 392 TYR H2 H N N 393 TYR HA H N N 394 TYR HB2 H N N 395 TYR HB3 H N N 396 TYR HD1 H N N 397 TYR HD2 H N N 398 TYR HE1 H N N 399 TYR HE2 H N N 400 TYR HH H N N 401 TYR HXT H N N 402 VAL N N N N 403 VAL CA C N S 404 VAL C C N N 405 VAL O O N N 406 VAL CB C N N 407 VAL CG1 C N N 408 VAL CG2 C N N 409 VAL OXT O N N 410 VAL H H N N 411 VAL H2 H N N 412 VAL HA H N N 413 VAL HB H N N 414 VAL HG11 H N N 415 VAL HG12 H N N 416 VAL HG13 H N N 417 VAL HG21 H N N 418 VAL HG22 H N N 419 VAL HG23 H N N 420 VAL HXT H N N 421 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 NAG C1 C2 sing N N 237 NAG C1 O1 sing N N 238 NAG C1 O5 sing N N 239 NAG C1 H1 sing N N 240 NAG C2 C3 sing N N 241 NAG C2 N2 sing N N 242 NAG C2 H2 sing N N 243 NAG C3 C4 sing N N 244 NAG C3 O3 sing N N 245 NAG C3 H3 sing N N 246 NAG C4 C5 sing N N 247 NAG C4 O4 sing N N 248 NAG C4 H4 sing N N 249 NAG C5 C6 sing N N 250 NAG C5 O5 sing N N 251 NAG C5 H5 sing N N 252 NAG C6 O6 sing N N 253 NAG C6 H61 sing N N 254 NAG C6 H62 sing N N 255 NAG C7 C8 sing N N 256 NAG C7 N2 sing N N 257 NAG C7 O7 doub N N 258 NAG C8 H81 sing N N 259 NAG C8 H82 sing N N 260 NAG C8 H83 sing N N 261 NAG N2 HN2 sing N N 262 NAG O1 HO1 sing N N 263 NAG O3 HO3 sing N N 264 NAG O4 HO4 sing N N 265 NAG O6 HO6 sing N N 266 PHE N CA sing N N 267 PHE N H sing N N 268 PHE N H2 sing N N 269 PHE CA C sing N N 270 PHE CA CB sing N N 271 PHE CA HA sing N N 272 PHE C O doub N N 273 PHE C OXT sing N N 274 PHE CB CG sing N N 275 PHE CB HB2 sing N N 276 PHE CB HB3 sing N N 277 PHE CG CD1 doub Y N 278 PHE CG CD2 sing Y N 279 PHE CD1 CE1 sing Y N 280 PHE CD1 HD1 sing N N 281 PHE CD2 CE2 doub Y N 282 PHE CD2 HD2 sing N N 283 PHE CE1 CZ doub Y N 284 PHE CE1 HE1 sing N N 285 PHE CE2 CZ sing Y N 286 PHE CE2 HE2 sing N N 287 PHE CZ HZ sing N N 288 PHE OXT HXT sing N N 289 PRO N CA sing N N 290 PRO N CD sing N N 291 PRO N H sing N N 292 PRO CA C sing N N 293 PRO CA CB sing N N 294 PRO CA HA sing N N 295 PRO C O doub N N 296 PRO C OXT sing N N 297 PRO CB CG sing N N 298 PRO CB HB2 sing N N 299 PRO CB HB3 sing N N 300 PRO CG CD sing N N 301 PRO CG HG2 sing N N 302 PRO CG HG3 sing N N 303 PRO CD HD2 sing N N 304 PRO CD HD3 sing N N 305 PRO OXT HXT sing N N 306 SER N CA sing N N 307 SER N H sing N N 308 SER N H2 sing N N 309 SER CA C sing N N 310 SER CA CB sing N N 311 SER CA HA sing N N 312 SER C O doub N N 313 SER C OXT sing N N 314 SER CB OG sing N N 315 SER CB HB2 sing N N 316 SER CB HB3 sing N N 317 SER OG HG sing N N 318 SER OXT HXT sing N N 319 THR N CA sing N N 320 THR N H sing N N 321 THR N H2 sing N N 322 THR CA C sing N N 323 THR CA CB sing N N 324 THR CA HA sing N N 325 THR C O doub N N 326 THR C OXT sing N N 327 THR CB OG1 sing N N 328 THR CB CG2 sing N N 329 THR CB HB sing N N 330 THR OG1 HG1 sing N N 331 THR CG2 HG21 sing N N 332 THR CG2 HG22 sing N N 333 THR CG2 HG23 sing N N 334 THR OXT HXT sing N N 335 TRP N CA sing N N 336 TRP N H sing N N 337 TRP N H2 sing N N 338 TRP CA C sing N N 339 TRP CA CB sing N N 340 TRP CA HA sing N N 341 TRP C O doub N N 342 TRP C OXT sing N N 343 TRP CB CG sing N N 344 TRP CB HB2 sing N N 345 TRP CB HB3 sing N N 346 TRP CG CD1 doub Y N 347 TRP CG CD2 sing Y N 348 TRP CD1 NE1 sing Y N 349 TRP CD1 HD1 sing N N 350 TRP CD2 CE2 doub Y N 351 TRP CD2 CE3 sing Y N 352 TRP NE1 CE2 sing Y N 353 TRP NE1 HE1 sing N N 354 TRP CE2 CZ2 sing Y N 355 TRP CE3 CZ3 doub Y N 356 TRP CE3 HE3 sing N N 357 TRP CZ2 CH2 doub Y N 358 TRP CZ2 HZ2 sing N N 359 TRP CZ3 CH2 sing Y N 360 TRP CZ3 HZ3 sing N N 361 TRP CH2 HH2 sing N N 362 TRP OXT HXT sing N N 363 TYR N CA sing N N 364 TYR N H sing N N 365 TYR N H2 sing N N 366 TYR CA C sing N N 367 TYR CA CB sing N N 368 TYR CA HA sing N N 369 TYR C O doub N N 370 TYR C OXT sing N N 371 TYR CB CG sing N N 372 TYR CB HB2 sing N N 373 TYR CB HB3 sing N N 374 TYR CG CD1 doub Y N 375 TYR CG CD2 sing Y N 376 TYR CD1 CE1 sing Y N 377 TYR CD1 HD1 sing N N 378 TYR CD2 CE2 doub Y N 379 TYR CD2 HD2 sing N N 380 TYR CE1 CZ doub Y N 381 TYR CE1 HE1 sing N N 382 TYR CE2 CZ sing Y N 383 TYR CE2 HE2 sing N N 384 TYR CZ OH sing N N 385 TYR OH HH sing N N 386 TYR OXT HXT sing N N 387 VAL N CA sing N N 388 VAL N H sing N N 389 VAL N H2 sing N N 390 VAL CA C sing N N 391 VAL CA CB sing N N 392 VAL CA HA sing N N 393 VAL C O doub N N 394 VAL C OXT sing N N 395 VAL CB CG1 sing N N 396 VAL CB CG2 sing N N 397 VAL CB HB sing N N 398 VAL CG1 HG11 sing N N 399 VAL CG1 HG12 sing N N 400 VAL CG1 HG13 sing N N 401 VAL CG2 HG21 sing N N 402 VAL CG2 HG22 sing N N 403 VAL CG2 HG23 sing N N 404 VAL OXT HXT sing N N 405 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM103403 1 'Department of Energy (DOE, United States)' 'United States' DE-AC02-06CH11357 2 # _atom_sites.entry_id 4YN0 _atom_sites.fract_transf_matrix[1][1] 0.014854 _atom_sites.fract_transf_matrix[1][2] 0.008576 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017152 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004420 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O S # loop_