HEADER TRANSFERASE/INHIBITOR 09-MAR-15 4YND TITLE THE DISCOVERY OF A-893, A NEW CELL-ACTIVE BENZOXAZINONE INHIBITOR OF TITLE 2 LYSINE METHYLTRANSFERASE SMYD2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-LYSINE METHYLTRANSFERASE SMYD2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HSKM-B,HISTONE METHYLTRANSFERASE SMYD2,LYSINE N- COMPND 5 METHYLTRANSFERASE 3C,SET AND MYND DOMAIN-CONTAINING PROTEIN 2; COMPND 6 EC: 2.1.1.-,2.1.1.43; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMYD2, KMT3C; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS EPIGENETICS, SMYD2, H3K36, P53, METHYLTRANSFERASE, LYSINE, KEYWDS 2 TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.F.SWEIS,Z.WANG,M.ALGIRE,C.H.ARROWSMITH,P.J.BROWN,G.C.CHIANG,J.GUO, AUTHOR 2 C.G.JAKOB,S.KENNEDY,F.LI,N.B.SONI,M.VEDADI,W.N.PAPPANO REVDAT 3 27-SEP-23 4YND 1 HEADER SOURCE KEYWDS REMARK REVDAT 2 08-JUL-15 4YND 1 JRNL REVDAT 1 20-MAY-15 4YND 0 JRNL AUTH R.F.SWEIS,Z.WANG,M.ALGIRE,C.H.ARROWSMITH,P.J.BROWN, JRNL AUTH 2 G.G.CHIANG,J.GUO,C.G.JAKOB,S.KENNEDY,F.LI,D.MAAG,B.SHAW, JRNL AUTH 3 N.B.SONI,M.VEDADI,W.N.PAPPANO JRNL TITL DISCOVERY OF A-893, A NEW CELL-ACTIVE BENZOXAZINONE JRNL TITL 2 INHIBITOR OF LYSINE METHYLTRANSFERASE SMYD2. JRNL REF ACS MED.CHEM.LETT. V. 6 695 2015 JRNL REFN ISSN 1948-5875 JRNL PMID 26101576 JRNL DOI 10.1021/ACSMEDCHEMLETT.5B00124 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.6 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 11691 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.720 REMARK 3 FREE R VALUE TEST SET COUNT : 552 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.06 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2739 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2186 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2599 REMARK 3 BIN R VALUE (WORKING SET) : 0.2168 REMARK 3 BIN FREE R VALUE : 0.2512 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.11 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 140 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3433 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 131 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.73070 REMARK 3 B22 (A**2) : 5.33120 REMARK 3 B33 (A**2) : -1.60050 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.324 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.397 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.832 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3582 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4831 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1268 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 90 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 529 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3582 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 443 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4039 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.93 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.96 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YND COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207750. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11772 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 118.938 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.15500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.56300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3S7B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEIN LIGAND COMPLEX WAS MADE REMARK 280 USING A SLIGHT MOLAR EXCESS OF S ADENOMETHIONINE (SAM) AND A-893 REMARK 280 FROM CONCENTRATED DMSO STOCKS. CO-CRYSTALS WERE GROWN USING THE REMARK 280 HANGING DROP FORMAT WITH A 1:1 V/V DROP COMPOSITION OF THE REMARK 280 PROTEIN COMPLEX: WELL SOLUTION (20% W/V PEG 10,000, 0.1 HEPES PH REMARK 280 7.5) AT 17C., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.39800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.46500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.65050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.46500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.39800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.65050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -27 REMARK 465 SER A -26 REMARK 465 TYR A -25 REMARK 465 TYR A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 ASP A -17 REMARK 465 TYR A -16 REMARK 465 ASP A -15 REMARK 465 ILE A -14 REMARK 465 PRO A -13 REMARK 465 THR A -12 REMARK 465 THR A -11 REMARK 465 GLU A -10 REMARK 465 ASN A -9 REMARK 465 LEU A -8 REMARK 465 TYR A -7 REMARK 465 PHE A -6 REMARK 465 GLN A -5 REMARK 465 GLY A -4 REMARK 465 ALA A -3 REMARK 465 MET A -2 REMARK 465 ASP A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 GLU A 431 REMARK 465 SER A 432 REMARK 465 HIS A 433 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 119 77.86 -118.27 REMARK 500 CYS A 210 74.14 -118.91 REMARK 500 VAL A 277 58.83 -106.54 REMARK 500 ASP A 284 78.90 -119.33 REMARK 500 TYR A 311 -36.21 -134.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 731 DISTANCE = 6.91 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 52 SG REMARK 620 2 CYS A 55 SG 103.5 REMARK 620 3 CYS A 74 SG 99.3 93.0 REMARK 620 4 CYS A 78 SG 112.6 121.1 123.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 65 SG REMARK 620 2 CYS A 68 SG 112.1 REMARK 620 3 HIS A 86 NE2 103.4 111.6 REMARK 620 4 CYS A 90 SG 107.5 120.7 99.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 209 SG REMARK 620 2 CYS A 262 SG 115.5 REMARK 620 3 CYS A 264 SG 110.6 97.1 REMARK 620 4 CYS A 267 SG 102.4 112.7 119.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4GQ A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 505 DBREF 4YND A 1 433 UNP Q9NRG4 SMYD2_HUMAN 1 433 SEQADV 4YND MET A -27 UNP Q9NRG4 INITIATING METHIONINE SEQADV 4YND SER A -26 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND TYR A -25 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND TYR A -24 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND HIS A -23 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND HIS A -22 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND HIS A -21 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND HIS A -20 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND HIS A -19 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND HIS A -18 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND ASP A -17 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND TYR A -16 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND ASP A -15 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND ILE A -14 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND PRO A -13 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND THR A -12 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND THR A -11 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND GLU A -10 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND ASN A -9 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND LEU A -8 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND TYR A -7 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND PHE A -6 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND GLN A -5 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND GLY A -4 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND ALA A -3 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND MET A -2 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND ASP A -1 UNP Q9NRG4 EXPRESSION TAG SEQADV 4YND PRO A 0 UNP Q9NRG4 EXPRESSION TAG SEQRES 1 A 461 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 A 461 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 A 461 ASP PRO MET ARG ALA GLU GLY LEU GLY GLY LEU GLU ARG SEQRES 4 A 461 PHE CYS SER PRO GLY LYS GLY ARG GLY LEU ARG ALA LEU SEQRES 5 A 461 GLN PRO PHE GLN VAL GLY ASP LEU LEU PHE SER CYS PRO SEQRES 6 A 461 ALA TYR ALA TYR VAL LEU THR VAL ASN GLU ARG GLY ASN SEQRES 7 A 461 HIS CYS GLU TYR CYS PHE THR ARG LYS GLU GLY LEU SER SEQRES 8 A 461 LYS CYS GLY ARG CYS LYS GLN ALA PHE TYR CYS ASN VAL SEQRES 9 A 461 GLU CYS GLN LYS GLU ASP TRP PRO MET HIS LYS LEU GLU SEQRES 10 A 461 CYS SER PRO MET VAL VAL PHE GLY GLU ASN TRP ASN PRO SEQRES 11 A 461 SER GLU THR VAL ARG LEU THR ALA ARG ILE LEU ALA LYS SEQRES 12 A 461 GLN LYS ILE HIS PRO GLU ARG THR PRO SER GLU LYS LEU SEQRES 13 A 461 LEU ALA VAL LYS GLU PHE GLU SER HIS LEU ASP LYS LEU SEQRES 14 A 461 ASP ASN GLU LYS LYS ASP LEU ILE GLN SER ASP ILE ALA SEQRES 15 A 461 ALA LEU HIS HIS PHE TYR SER LYS HIS LEU GLY PHE PRO SEQRES 16 A 461 ASP ASN ASP SER LEU VAL VAL LEU PHE ALA GLN VAL ASN SEQRES 17 A 461 CYS ASN GLY PHE THR ILE GLU ASP GLU GLU LEU SER HIS SEQRES 18 A 461 LEU GLY SER ALA ILE PHE PRO ASP VAL ALA LEU MET ASN SEQRES 19 A 461 HIS SER CYS CYS PRO ASN VAL ILE VAL THR TYR LYS GLY SEQRES 20 A 461 THR LEU ALA GLU VAL ARG ALA VAL GLN GLU ILE LYS PRO SEQRES 21 A 461 GLY GLU GLU VAL PHE THR SER TYR ILE ASP LEU LEU TYR SEQRES 22 A 461 PRO THR GLU ASP ARG ASN ASP ARG LEU ARG ASP SER TYR SEQRES 23 A 461 PHE PHE THR CYS GLU CYS GLN GLU CYS THR THR LYS ASP SEQRES 24 A 461 LYS ASP LYS ALA LYS VAL GLU ILE ARG LYS LEU SER ASP SEQRES 25 A 461 PRO PRO LYS ALA GLU ALA ILE ARG ASP MET VAL ARG TYR SEQRES 26 A 461 ALA ARG ASN VAL ILE GLU GLU PHE ARG ARG ALA LYS HIS SEQRES 27 A 461 TYR LYS SER PRO SER GLU LEU LEU GLU ILE CYS GLU LEU SEQRES 28 A 461 SER GLN GLU LYS MET SER SER VAL PHE GLU ASP SER ASN SEQRES 29 A 461 VAL TYR MET LEU HIS MET MET TYR GLN ALA MET GLY VAL SEQRES 30 A 461 CYS LEU TYR MET GLN ASP TRP GLU GLY ALA LEU GLN TYR SEQRES 31 A 461 GLY GLN LYS ILE ILE LYS PRO TYR SER LYS HIS TYR PRO SEQRES 32 A 461 LEU TYR SER LEU ASN VAL ALA SER MET TRP LEU LYS LEU SEQRES 33 A 461 GLY ARG LEU TYR MET GLY LEU GLU HIS LYS ALA ALA GLY SEQRES 34 A 461 GLU LYS ALA LEU LYS LYS ALA ILE ALA ILE MET GLU VAL SEQRES 35 A 461 ALA HIS GLY LYS ASP HIS PRO TYR ILE SER GLU ILE LYS SEQRES 36 A 461 GLN GLU ILE GLU SER HIS HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET 4GQ A 504 39 HET SAM A 505 27 HETNAM ZN ZINC ION HETNAM 4GQ N-CYCLOHEXYL-N~3~-[2-(3,4-DICHLOROPHENYL)ETHYL]-N-(2- HETNAM 2 4GQ {[(2R)-2-HYDROXY-2-(3-OXO-3,4-DIHYDRO-2H-1,4- HETNAM 3 4GQ BENZOXAZIN-8-YL)ETHYL]AMINO}ETHYL)-BETA-ALANINAMIDE HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 2 ZN 3(ZN 2+) FORMUL 5 4GQ C29 H38 CL2 N4 O4 FORMUL 6 SAM C15 H22 N6 O5 S FORMUL 7 HOH *131(H2 O) HELIX 1 AA1 VAL A 45 ARG A 48 5 4 HELIX 2 AA2 ASN A 75 GLY A 97 1 23 HELIX 3 AA3 GLU A 98 TRP A 100 5 3 HELIX 4 AA4 SER A 103 HIS A 119 1 17 HELIX 5 AA5 ALA A 130 PHE A 134 5 5 HELIX 6 AA6 ASP A 142 SER A 161 1 20 HELIX 7 AA7 ASP A 168 GLY A 183 1 16 HELIX 8 AA8 ASP A 201 MET A 205 5 5 HELIX 9 AA9 PRO A 246 TYR A 258 1 13 HELIX 10 AB1 CYS A 264 LYS A 270 1 7 HELIX 11 AB2 LYS A 272 VAL A 277 1 6 HELIX 12 AB3 LYS A 287 LYS A 309 1 23 HELIX 13 AB4 SER A 313 SER A 329 1 17 HELIX 14 AB5 ASN A 336 MET A 353 1 18 HELIX 15 AB6 ASP A 355 TYR A 374 1 20 HELIX 16 AB7 SER A 378 LEU A 395 1 18 HELIX 17 AB8 HIS A 397 HIS A 416 1 20 HELIX 18 AB9 HIS A 420 ILE A 430 1 11 SHEET 1 AA1 2 LEU A 9 SER A 14 0 SHEET 2 AA1 2 GLY A 18 ALA A 23 -1 O GLY A 20 N PHE A 12 SHEET 1 AA2 3 LEU A 32 PRO A 37 0 SHEET 2 AA2 3 LEU A 221 ALA A 226 -1 O ALA A 222 N CYS A 36 SHEET 3 AA2 3 VAL A 213 LYS A 218 -1 N THR A 216 O GLU A 223 SHEET 1 AA3 3 ALA A 40 LEU A 43 0 SHEET 2 AA3 3 HIS A 193 ILE A 198 -1 O SER A 196 N VAL A 42 SHEET 3 AA3 3 PHE A 184 GLU A 187 -1 N PHE A 184 O ALA A 197 SHEET 1 AA4 2 SER A 63 LYS A 64 0 SHEET 2 AA4 2 PHE A 72 TYR A 73 -1 O TYR A 73 N SER A 63 SHEET 1 AA5 2 ASN A 206 HIS A 207 0 SHEET 2 AA5 2 PHE A 237 THR A 238 1 O THR A 238 N ASN A 206 LINK SG CYS A 52 ZN ZN A 501 1555 1555 2.42 LINK SG CYS A 55 ZN ZN A 501 1555 1555 2.33 LINK SG CYS A 65 ZN ZN A 503 1555 1555 2.36 LINK SG CYS A 68 ZN ZN A 503 1555 1555 2.29 LINK SG CYS A 74 ZN ZN A 501 1555 1555 2.63 LINK SG CYS A 78 ZN ZN A 501 1555 1555 2.33 LINK NE2 HIS A 86 ZN ZN A 503 1555 1555 2.21 LINK SG CYS A 90 ZN ZN A 503 1555 1555 2.33 LINK SG CYS A 209 ZN ZN A 502 1555 1555 2.35 LINK SG CYS A 262 ZN ZN A 502 1555 1555 2.38 LINK SG CYS A 264 ZN ZN A 502 1555 1555 2.51 LINK SG CYS A 267 ZN ZN A 502 1555 1555 2.35 SITE 1 AC1 4 CYS A 52 CYS A 55 CYS A 74 CYS A 78 SITE 1 AC2 4 CYS A 209 CYS A 262 CYS A 264 CYS A 267 SITE 1 AC3 4 CYS A 65 CYS A 68 HIS A 86 CYS A 90 SITE 1 AC4 16 THR A 105 LEU A 141 LYS A 145 ILE A 149 SITE 2 AC4 16 VAL A 179 ASN A 180 ASN A 182 GLY A 183 SITE 3 AC4 16 PHE A 184 ALA A 203 SER A 239 TYR A 240 SITE 4 AC4 16 SER A 257 TYR A 258 SAM A 505 HOH A 614 SITE 1 AC5 14 GLY A 16 LYS A 17 ARG A 19 HIS A 137 SITE 2 AC5 14 CYS A 181 ASN A 182 ALA A 203 LEU A 204 SITE 3 AC5 14 ASN A 206 HIS A 207 TYR A 240 TYR A 258 SITE 4 AC5 14 PHE A 260 4GQ A 504 CRYST1 52.796 71.301 118.930 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018941 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014025 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008408 0.00000