data_4YO2 # _entry.id 4YO2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4YO2 pdb_00004yo2 10.2210/pdb4yo2/pdb WWPDB D_1000207218 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-12-09 2 'Structure model' 1 1 2015-12-16 3 'Structure model' 1 2 2024-01-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4YO2 _pdbx_database_status.recvd_initial_deposition_date 2015-03-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Morgunova, E.' 1 'Yin, Y.' 2 'Jolma, A.' 3 'Dave, K.' 4 'Schmierer, B.' 5 'Popov, A.' 6 'Eremina, N.' 7 'Nilsson, L.' 8 'Taipale, J.' 9 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 6 _citation.language ? _citation.page_first 10050 _citation.page_last 10050 _citation.title 'Structural insights into the DNA-binding specificity of E2F family transcription factors.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/ncomms10050 _citation.pdbx_database_id_PubMed 26632596 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Morgunova, E.' 1 ? primary 'Yin, Y.' 2 ? primary 'Jolma, A.' 3 ? primary 'Dave, K.' 4 ? primary 'Schmierer, B.' 5 ? primary 'Popov, A.' 6 ? primary 'Eremina, N.' 7 ? primary 'Nilsson, L.' 8 ? primary 'Taipale, J.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcription factor E2F8' 26903.115 1 ? ? 'UNP residues 110-341' ? 2 polymer syn ;DNA (5'-D(P*TP*TP*TP*TP*CP*CP*CP*GP*CP*CP*AP*AP*AP*AP*A)-3') ; 4512.963 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(P*TP*TP*TP*TP*TP*GP*GP*CP*GP*GP*GP*AP*AP*AP*A)-3') ; 4664.044 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name E2F-8 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;QPSRKEKSLGLLCHKFLARYPNYPNPAVNNDICLDEVAEELNVERRRIYDIVNVLESLHMVSRLAKNRYTWHGRHNLNKT LGTLKSIGEENKYAEQIMMIKKKEYEQEFDFIKSYSIEDHIIKSNTGPNGHPDMCFVELPGVEFRAASVNSRKDKSLRVM SQKFVMLFLVSTPQIVSLEVAAKILIGEDHVEDLDKSKFKTKIRRLYDIANVLSSLDLIKKVHVTEERGRKP ; ;QPSRKEKSLGLLCHKFLARYPNYPNPAVNNDICLDEVAEELNVERRRIYDIVNVLESLHMVSRLAKNRYTWHGRHNLNKT LGTLKSIGEENKYAEQIMMIKKKEYEQEFDFIKSYSIEDHIIKSNTGPNGHPDMCFVELPGVEFRAASVNSRKDKSLRVM SQKFVMLFLVSTPQIVSLEVAAKILIGEDHVEDLDKSKFKTKIRRLYDIANVLSSLDLIKKVHVTEERGRKP ; A ? 2 polydeoxyribonucleotide no no '(DT)(DT)(DT)(DT)(DC)(DC)(DC)(DG)(DC)(DC)(DA)(DA)(DA)(DA)(DA)' TTTTCCCGCCAAAAA C ? 3 polydeoxyribonucleotide no no '(DT)(DT)(DT)(DT)(DT)(DG)(DG)(DC)(DG)(DG)(DG)(DA)(DA)(DA)(DA)' TTTTTGGCGGGAAAA D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 PRO n 1 3 SER n 1 4 ARG n 1 5 LYS n 1 6 GLU n 1 7 LYS n 1 8 SER n 1 9 LEU n 1 10 GLY n 1 11 LEU n 1 12 LEU n 1 13 CYS n 1 14 HIS n 1 15 LYS n 1 16 PHE n 1 17 LEU n 1 18 ALA n 1 19 ARG n 1 20 TYR n 1 21 PRO n 1 22 ASN n 1 23 TYR n 1 24 PRO n 1 25 ASN n 1 26 PRO n 1 27 ALA n 1 28 VAL n 1 29 ASN n 1 30 ASN n 1 31 ASP n 1 32 ILE n 1 33 CYS n 1 34 LEU n 1 35 ASP n 1 36 GLU n 1 37 VAL n 1 38 ALA n 1 39 GLU n 1 40 GLU n 1 41 LEU n 1 42 ASN n 1 43 VAL n 1 44 GLU n 1 45 ARG n 1 46 ARG n 1 47 ARG n 1 48 ILE n 1 49 TYR n 1 50 ASP n 1 51 ILE n 1 52 VAL n 1 53 ASN n 1 54 VAL n 1 55 LEU n 1 56 GLU n 1 57 SER n 1 58 LEU n 1 59 HIS n 1 60 MET n 1 61 VAL n 1 62 SER n 1 63 ARG n 1 64 LEU n 1 65 ALA n 1 66 LYS n 1 67 ASN n 1 68 ARG n 1 69 TYR n 1 70 THR n 1 71 TRP n 1 72 HIS n 1 73 GLY n 1 74 ARG n 1 75 HIS n 1 76 ASN n 1 77 LEU n 1 78 ASN n 1 79 LYS n 1 80 THR n 1 81 LEU n 1 82 GLY n 1 83 THR n 1 84 LEU n 1 85 LYS n 1 86 SER n 1 87 ILE n 1 88 GLY n 1 89 GLU n 1 90 GLU n 1 91 ASN n 1 92 LYS n 1 93 TYR n 1 94 ALA n 1 95 GLU n 1 96 GLN n 1 97 ILE n 1 98 MET n 1 99 MET n 1 100 ILE n 1 101 LYS n 1 102 LYS n 1 103 LYS n 1 104 GLU n 1 105 TYR n 1 106 GLU n 1 107 GLN n 1 108 GLU n 1 109 PHE n 1 110 ASP n 1 111 PHE n 1 112 ILE n 1 113 LYS n 1 114 SER n 1 115 TYR n 1 116 SER n 1 117 ILE n 1 118 GLU n 1 119 ASP n 1 120 HIS n 1 121 ILE n 1 122 ILE n 1 123 LYS n 1 124 SER n 1 125 ASN n 1 126 THR n 1 127 GLY n 1 128 PRO n 1 129 ASN n 1 130 GLY n 1 131 HIS n 1 132 PRO n 1 133 ASP n 1 134 MET n 1 135 CYS n 1 136 PHE n 1 137 VAL n 1 138 GLU n 1 139 LEU n 1 140 PRO n 1 141 GLY n 1 142 VAL n 1 143 GLU n 1 144 PHE n 1 145 ARG n 1 146 ALA n 1 147 ALA n 1 148 SER n 1 149 VAL n 1 150 ASN n 1 151 SER n 1 152 ARG n 1 153 LYS n 1 154 ASP n 1 155 LYS n 1 156 SER n 1 157 LEU n 1 158 ARG n 1 159 VAL n 1 160 MET n 1 161 SER n 1 162 GLN n 1 163 LYS n 1 164 PHE n 1 165 VAL n 1 166 MET n 1 167 LEU n 1 168 PHE n 1 169 LEU n 1 170 VAL n 1 171 SER n 1 172 THR n 1 173 PRO n 1 174 GLN n 1 175 ILE n 1 176 VAL n 1 177 SER n 1 178 LEU n 1 179 GLU n 1 180 VAL n 1 181 ALA n 1 182 ALA n 1 183 LYS n 1 184 ILE n 1 185 LEU n 1 186 ILE n 1 187 GLY n 1 188 GLU n 1 189 ASP n 1 190 HIS n 1 191 VAL n 1 192 GLU n 1 193 ASP n 1 194 LEU n 1 195 ASP n 1 196 LYS n 1 197 SER n 1 198 LYS n 1 199 PHE n 1 200 LYS n 1 201 THR n 1 202 LYS n 1 203 ILE n 1 204 ARG n 1 205 ARG n 1 206 LEU n 1 207 TYR n 1 208 ASP n 1 209 ILE n 1 210 ALA n 1 211 ASN n 1 212 VAL n 1 213 LEU n 1 214 SER n 1 215 SER n 1 216 LEU n 1 217 ASP n 1 218 LEU n 1 219 ILE n 1 220 LYS n 1 221 LYS n 1 222 VAL n 1 223 HIS n 1 224 VAL n 1 225 THR n 1 226 GLU n 1 227 GLU n 1 228 ARG n 1 229 GLY n 1 230 ARG n 1 231 LYS n 1 232 PRO n 2 1 DT n 2 2 DT n 2 3 DT n 2 4 DT n 2 5 DC n 2 6 DC n 2 7 DC n 2 8 DG n 2 9 DC n 2 10 DC n 2 11 DA n 2 12 DA n 2 13 DA n 2 14 DA n 2 15 DA n 3 1 DT n 3 2 DT n 3 3 DT n 3 4 DT n 3 5 DT n 3 6 DG n 3 7 DG n 3 8 DC n 3 9 DG n 3 10 DG n 3 11 DG n 3 12 DA n 3 13 DA n 3 14 DA n 3 15 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 232 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene E2F8 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant 'Rosetta 2 pLysS' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pETG20A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 15 'Homo sapiens' Human 9606 ? 3 1 sample 1 15 'Homo sapiens' Human 9606 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 110 110 GLN GLN A . n A 1 2 PRO 2 111 111 PRO PRO A . n A 1 3 SER 3 112 112 SER SER A . n A 1 4 ARG 4 113 113 ARG ARG A . n A 1 5 LYS 5 114 114 LYS LYS A . n A 1 6 GLU 6 115 115 GLU GLU A . n A 1 7 LYS 7 116 116 LYS LYS A . n A 1 8 SER 8 117 117 SER SER A . n A 1 9 LEU 9 118 118 LEU LEU A . n A 1 10 GLY 10 119 119 GLY GLY A . n A 1 11 LEU 11 120 120 LEU LEU A . n A 1 12 LEU 12 121 121 LEU LEU A . n A 1 13 CYS 13 122 122 CYS CYS A . n A 1 14 HIS 14 123 123 HIS HIS A . n A 1 15 LYS 15 124 124 LYS LYS A . n A 1 16 PHE 16 125 125 PHE PHE A . n A 1 17 LEU 17 126 126 LEU LEU A . n A 1 18 ALA 18 127 127 ALA ALA A . n A 1 19 ARG 19 128 128 ARG ARG A . n A 1 20 TYR 20 129 129 TYR TYR A . n A 1 21 PRO 21 130 130 PRO PRO A . n A 1 22 ASN 22 131 131 ASN ASN A . n A 1 23 TYR 23 132 132 TYR TYR A . n A 1 24 PRO 24 133 133 PRO PRO A . n A 1 25 ASN 25 134 134 ASN ASN A . n A 1 26 PRO 26 135 135 PRO PRO A . n A 1 27 ALA 27 136 136 ALA ALA A . n A 1 28 VAL 28 137 137 VAL VAL A . n A 1 29 ASN 29 138 138 ASN ASN A . n A 1 30 ASN 30 139 139 ASN ASN A . n A 1 31 ASP 31 140 140 ASP ASP A . n A 1 32 ILE 32 141 141 ILE ILE A . n A 1 33 CYS 33 142 142 CYS CYS A . n A 1 34 LEU 34 143 143 LEU LEU A . n A 1 35 ASP 35 144 144 ASP ASP A . n A 1 36 GLU 36 145 145 GLU GLU A . n A 1 37 VAL 37 146 146 VAL VAL A . n A 1 38 ALA 38 147 147 ALA ALA A . n A 1 39 GLU 39 148 148 GLU GLU A . n A 1 40 GLU 40 149 149 GLU GLU A . n A 1 41 LEU 41 150 150 LEU LEU A . n A 1 42 ASN 42 151 151 ASN ASN A . n A 1 43 VAL 43 152 152 VAL VAL A . n A 1 44 GLU 44 153 153 GLU GLU A . n A 1 45 ARG 45 154 154 ARG ARG A . n A 1 46 ARG 46 155 155 ARG ARG A . n A 1 47 ARG 47 156 156 ARG ARG A . n A 1 48 ILE 48 157 157 ILE ILE A . n A 1 49 TYR 49 158 158 TYR TYR A . n A 1 50 ASP 50 159 159 ASP ASP A . n A 1 51 ILE 51 160 160 ILE ILE A . n A 1 52 VAL 52 161 161 VAL VAL A . n A 1 53 ASN 53 162 162 ASN ASN A . n A 1 54 VAL 54 163 163 VAL VAL A . n A 1 55 LEU 55 164 164 LEU LEU A . n A 1 56 GLU 56 165 165 GLU GLU A . n A 1 57 SER 57 166 166 SER SER A . n A 1 58 LEU 58 167 167 LEU LEU A . n A 1 59 HIS 59 168 168 HIS HIS A . n A 1 60 MET 60 169 169 MET MET A . n A 1 61 VAL 61 170 170 VAL VAL A . n A 1 62 SER 62 171 171 SER SER A . n A 1 63 ARG 63 172 172 ARG ARG A . n A 1 64 LEU 64 173 173 LEU LEU A . n A 1 65 ALA 65 174 174 ALA ALA A . n A 1 66 LYS 66 175 175 LYS LYS A . n A 1 67 ASN 67 176 176 ASN ASN A . n A 1 68 ARG 68 177 177 ARG ARG A . n A 1 69 TYR 69 178 178 TYR TYR A . n A 1 70 THR 70 179 179 THR THR A . n A 1 71 TRP 71 180 180 TRP TRP A . n A 1 72 HIS 72 181 181 HIS HIS A . n A 1 73 GLY 73 182 182 GLY GLY A . n A 1 74 ARG 74 183 183 ARG ARG A . n A 1 75 HIS 75 184 184 HIS HIS A . n A 1 76 ASN 76 185 185 ASN ASN A . n A 1 77 LEU 77 186 186 LEU LEU A . n A 1 78 ASN 78 187 187 ASN ASN A . n A 1 79 LYS 79 188 188 LYS LYS A . n A 1 80 THR 80 189 189 THR THR A . n A 1 81 LEU 81 190 190 LEU LEU A . n A 1 82 GLY 82 191 191 GLY GLY A . n A 1 83 THR 83 192 192 THR THR A . n A 1 84 LEU 84 193 193 LEU LEU A . n A 1 85 LYS 85 194 194 LYS LYS A . n A 1 86 SER 86 195 195 SER SER A . n A 1 87 ILE 87 196 196 ILE ILE A . n A 1 88 GLY 88 197 197 GLY GLY A . n A 1 89 GLU 89 198 198 GLU GLU A . n A 1 90 GLU 90 199 199 GLU GLU A . n A 1 91 ASN 91 200 200 ASN ASN A . n A 1 92 LYS 92 201 201 LYS LYS A . n A 1 93 TYR 93 202 202 TYR TYR A . n A 1 94 ALA 94 203 203 ALA ALA A . n A 1 95 GLU 95 204 204 GLU GLU A . n A 1 96 GLN 96 205 205 GLN GLN A . n A 1 97 ILE 97 206 206 ILE ILE A . n A 1 98 MET 98 207 207 MET MET A . n A 1 99 MET 99 208 208 MET MET A . n A 1 100 ILE 100 209 209 ILE ILE A . n A 1 101 LYS 101 210 210 LYS LYS A . n A 1 102 LYS 102 211 211 LYS LYS A . n A 1 103 LYS 103 212 212 LYS LYS A . n A 1 104 GLU 104 213 ? ? ? A . n A 1 105 TYR 105 214 ? ? ? A . n A 1 106 GLU 106 215 ? ? ? A . n A 1 107 GLN 107 216 ? ? ? A . n A 1 108 GLU 108 217 ? ? ? A . n A 1 109 PHE 109 218 ? ? ? A . n A 1 110 ASP 110 219 ? ? ? A . n A 1 111 PHE 111 220 ? ? ? A . n A 1 112 ILE 112 221 ? ? ? A . n A 1 113 LYS 113 222 ? ? ? A . n A 1 114 SER 114 223 ? ? ? A . n A 1 115 TYR 115 224 ? ? ? A . n A 1 116 SER 116 225 ? ? ? A . n A 1 117 ILE 117 226 ? ? ? A . n A 1 118 GLU 118 227 ? ? ? A . n A 1 119 ASP 119 228 ? ? ? A . n A 1 120 HIS 120 229 ? ? ? A . n A 1 121 ILE 121 230 ? ? ? A . n A 1 122 ILE 122 231 ? ? ? A . n A 1 123 LYS 123 232 ? ? ? A . n A 1 124 SER 124 233 ? ? ? A . n A 1 125 ASN 125 234 ? ? ? A . n A 1 126 THR 126 235 ? ? ? A . n A 1 127 GLY 127 236 ? ? ? A . n A 1 128 PRO 128 237 ? ? ? A . n A 1 129 ASN 129 238 ? ? ? A . n A 1 130 GLY 130 239 ? ? ? A . n A 1 131 HIS 131 240 ? ? ? A . n A 1 132 PRO 132 241 ? ? ? A . n A 1 133 ASP 133 242 ? ? ? A . n A 1 134 MET 134 243 ? ? ? A . n A 1 135 CYS 135 244 ? ? ? A . n A 1 136 PHE 136 245 ? ? ? A . n A 1 137 VAL 137 246 ? ? ? A . n A 1 138 GLU 138 247 ? ? ? A . n A 1 139 LEU 139 248 ? ? ? A . n A 1 140 PRO 140 249 ? ? ? A . n A 1 141 GLY 141 250 ? ? ? A . n A 1 142 VAL 142 251 ? ? ? A . n A 1 143 GLU 143 252 ? ? ? A . n A 1 144 PHE 144 253 ? ? ? A . n A 1 145 ARG 145 254 ? ? ? A . n A 1 146 ALA 146 255 ? ? ? A . n A 1 147 ALA 147 256 ? ? ? A . n A 1 148 SER 148 257 ? ? ? A . n A 1 149 VAL 149 258 ? ? ? A . n A 1 150 ASN 150 259 259 ASN ALA A . n A 1 151 SER 151 260 260 SER SER A . n A 1 152 ARG 152 261 261 ARG ARG A . n A 1 153 LYS 153 262 262 LYS LYS A . n A 1 154 ASP 154 263 263 ASP ASP A . n A 1 155 LYS 155 264 264 LYS LYS A . n A 1 156 SER 156 265 265 SER SER A . n A 1 157 LEU 157 266 266 LEU LEU A . n A 1 158 ARG 158 267 267 ARG ARG A . n A 1 159 VAL 159 268 268 VAL VAL A . n A 1 160 MET 160 269 269 MET MET A . n A 1 161 SER 161 270 270 SER SER A . n A 1 162 GLN 162 271 271 GLN GLN A . n A 1 163 LYS 163 272 272 LYS LYS A . n A 1 164 PHE 164 273 273 PHE PHE A . n A 1 165 VAL 165 274 274 VAL VAL A . n A 1 166 MET 166 275 275 MET MET A . n A 1 167 LEU 167 276 276 LEU LEU A . n A 1 168 PHE 168 277 277 PHE PHE A . n A 1 169 LEU 169 278 278 LEU LEU A . n A 1 170 VAL 170 279 279 VAL VAL A . n A 1 171 SER 171 280 280 SER SER A . n A 1 172 THR 172 281 281 THR THR A . n A 1 173 PRO 173 282 282 PRO PRO A . n A 1 174 GLN 174 283 283 GLN GLN A . n A 1 175 ILE 175 284 284 ILE ILE A . n A 1 176 VAL 176 285 285 VAL VAL A . n A 1 177 SER 177 286 286 SER SER A . n A 1 178 LEU 178 287 287 LEU LEU A . n A 1 179 GLU 179 288 288 GLU GLU A . n A 1 180 VAL 180 289 289 VAL VAL A . n A 1 181 ALA 181 290 290 ALA ALA A . n A 1 182 ALA 182 291 291 ALA ALA A . n A 1 183 LYS 183 292 292 LYS LYS A . n A 1 184 ILE 184 293 293 ILE ILE A . n A 1 185 LEU 185 294 294 LEU LEU A . n A 1 186 ILE 186 295 295 ILE ILE A . n A 1 187 GLY 187 296 296 GLY GLY A . n A 1 188 GLU 188 297 297 GLU GLU A . n A 1 189 ASP 189 298 298 ASP ASP A . n A 1 190 HIS 190 299 299 HIS HIS A . n A 1 191 VAL 191 300 300 VAL VAL A . n A 1 192 GLU 192 301 301 GLU GLU A . n A 1 193 ASP 193 302 302 ASP ASP A . n A 1 194 LEU 194 303 303 LEU LEU A . n A 1 195 ASP 195 304 304 ASP ASP A . n A 1 196 LYS 196 305 305 LYS LYS A . n A 1 197 SER 197 306 306 SER SER A . n A 1 198 LYS 198 307 307 LYS LYS A . n A 1 199 PHE 199 308 308 PHE PHE A . n A 1 200 LYS 200 309 309 LYS LYS A . n A 1 201 THR 201 310 310 THR THR A . n A 1 202 LYS 202 311 311 LYS LYS A . n A 1 203 ILE 203 312 312 ILE ILE A . n A 1 204 ARG 204 313 313 ARG ARG A . n A 1 205 ARG 205 314 314 ARG ARG A . n A 1 206 LEU 206 315 315 LEU LEU A . n A 1 207 TYR 207 316 316 TYR TYR A . n A 1 208 ASP 208 317 317 ASP ASP A . n A 1 209 ILE 209 318 318 ILE ILE A . n A 1 210 ALA 210 319 319 ALA ALA A . n A 1 211 ASN 211 320 320 ASN ASN A . n A 1 212 VAL 212 321 321 VAL VAL A . n A 1 213 LEU 213 322 322 LEU LEU A . n A 1 214 SER 214 323 323 SER SER A . n A 1 215 SER 215 324 324 SER SER A . n A 1 216 LEU 216 325 325 LEU LEU A . n A 1 217 ASP 217 326 326 ASP ASP A . n A 1 218 LEU 218 327 327 LEU LEU A . n A 1 219 ILE 219 328 328 ILE ILE A . n A 1 220 LYS 220 329 329 LYS LYS A . n A 1 221 LYS 221 330 330 LYS LYS A . n A 1 222 VAL 222 331 331 VAL VAL A . n A 1 223 HIS 223 332 332 HIS HIS A . n A 1 224 VAL 224 333 333 VAL VAL A . n A 1 225 THR 225 334 334 THR THR A . n A 1 226 GLU 226 335 335 GLU GLU A . n A 1 227 GLU 227 336 336 GLU GLU A . n A 1 228 ARG 228 337 337 ARG ARG A . n A 1 229 GLY 229 338 338 GLY GLY A . n A 1 230 ARG 230 339 339 ARG ARG A . n A 1 231 LYS 231 340 340 LYS LYS A . n A 1 232 PRO 232 341 341 PRO PRO A . n B 2 1 DT 1 1 1 DT DT C . n B 2 2 DT 2 2 2 DT DT C . n B 2 3 DT 3 3 3 DT DT C . n B 2 4 DT 4 4 4 DT DT C . n B 2 5 DC 5 5 5 DC DC C . n B 2 6 DC 6 6 6 DC DC C . n B 2 7 DC 7 7 7 DC DC C . n B 2 8 DG 8 8 8 DG DG C . n B 2 9 DC 9 9 9 DC DC C . n B 2 10 DC 10 10 10 DC DC C . n B 2 11 DA 11 11 11 DA DA C . n B 2 12 DA 12 12 12 DA DA C . n B 2 13 DA 13 13 13 DA DA C . n B 2 14 DA 14 14 14 DA DA C . n B 2 15 DA 15 15 15 DA DA C . n C 3 1 DT 1 1 1 DT DT D . n C 3 2 DT 2 2 2 DT DT D . n C 3 3 DT 3 3 3 DT DT D . n C 3 4 DT 4 4 4 DT DT D . n C 3 5 DT 5 5 5 DT DT D . n C 3 6 DG 6 6 6 DG DG D . n C 3 7 DG 7 7 7 DG DG D . n C 3 8 DC 8 8 8 DC DC D . n C 3 9 DG 9 9 9 DG DG D . n C 3 10 DG 10 10 10 DG DG D . n C 3 11 DG 11 11 11 DG DG D . n C 3 12 DA 12 12 12 DA DA D . n C 3 13 DA 13 13 13 DA DA D . n C 3 14 DA 14 14 14 DA DA D . n C 3 15 DA 15 15 15 DA DA D . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASN 259 ? CG ? A ASN 150 CG 2 1 Y 1 A ASN 259 ? OD1 ? A ASN 150 OD1 3 1 Y 1 A ASN 259 ? ND2 ? A ASN 150 ND2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 4YO2 _cell.details ? _cell.formula_units_Z ? _cell.length_a 98.830 _cell.length_a_esd ? _cell.length_b 98.830 _cell.length_b_esd ? _cell.length_c 121.690 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YO2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4YO2 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.63 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 73 _exptl_crystal.description 'half of hexagonal plate' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.09 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Hepes, PEG 4000, ammonium sulfate, PEG 400' _exptl_crystal_grow.pdbx_pH_range '7.0 - 7.1' # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-05-21 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'bent cylindrical mirror' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97628 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97628 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ID23-1 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate 123 _reflns.entry_id 4YO2 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.073 _reflns.d_resolution_low 49.591 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all 77733 _reflns.number_obs 12768 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.5 _reflns.pdbx_Rmerge_I_obs 0.169 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.67 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 3.07 _reflns_shell.d_res_low 3.182 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 89.2 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 539.430 _refine.B_iso_mean 153.7000 _refine.B_iso_min 69.310 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4YO2 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.0730 _refine.ls_d_res_low 14.9180 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12641 _refine.ls_number_reflns_R_free 632 _refine.ls_number_reflns_R_work 11989 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.4400 _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2720 _refine.ls_R_factor_R_free 0.2968 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2716 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.020 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1CF7 _refine.pdbx_stereochemistry_target_values TWIN_LSQ_F _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set 0.5314 _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 3.0730 _refine_hist.d_res_low 14.9180 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2130 _refine_hist.pdbx_number_residues_total 216 _refine_hist.pdbx_number_atoms_protein 1515 _refine_hist.pdbx_number_atoms_nucleic_acid 615 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.003 ? 2225 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.661 ? 3118 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.030 ? 355 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.003 ? 289 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 22.530 ? 903 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 3.0726 3.3072 . . . 2287 89.0000 . . . . . . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.3072 3.6350 . . 127 2409 93.0000 . . . 0.3274 . 0.3080 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6350 4.1497 . . 127 2414 93.0000 . . . 0.3596 . 0.3253 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.1497 5.1862 . . 127 2415 92.0000 . . . 0.3114 . 0.3072 . . . . . . . . . . 'X-RAY DIFFRACTION' 5.1862 14.2819 . . 130 2464 91.0000 . . . 0.2631 . 0.2155 . . . . . . . . . . # _struct.entry_id 4YO2 _struct.title 'Structure of E2F8, an atypical member of E2F family of transcription factors' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4YO2 _struct_keywords.text 'transcription factor, E2F family, DNA-complex, transcription, fusion protein' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP E2F8_HUMAN A0AVK6 ? 1 ;QPSRKEKSLGLLCHKFLARYPNYPNPAVNNDICLDEVAEELNVERRRIYDIVNVLESLHMVSRLAKNRYTWHGRHNLNKT LGTLKSIGEENKYAEQIMMIKKKEYEQEFDFIKSYSIEDHIIKSNTGPNGHPDMCFVELPGVEFRAASVNSRKDKSLRVM SQKFVMLFLVSTPQIVSLEVAAKILIGEDHVEDLDKSKFKTKIRRLYDIANVLSSLDLIKKVHVTEERGRKP ; 110 2 PDB 4YO2 4YO2 ? 2 ? 1 3 PDB 4YO2 4YO2 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4YO2 A 1 ? 232 ? A0AVK6 110 ? 341 ? 110 341 2 2 4YO2 C 1 ? 15 ? 4YO2 1 ? 15 ? 1 15 3 3 4YO2 D 1 ? 15 ? 4YO2 1 ? 15 ? 1 15 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details Trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4300 ? 1 MORE -28 ? 1 'SSA (A^2)' 15330 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ARG A 4 ? LYS A 7 ? ARG A 113 LYS A 116 5 ? 4 HELX_P HELX_P2 AA2 SER A 8 ? TYR A 20 ? SER A 117 TYR A 129 1 ? 13 HELX_P HELX_P3 AA3 ILE A 32 ? GLU A 40 ? ILE A 141 GLU A 149 1 ? 9 HELX_P HELX_P4 AA4 GLU A 44 ? LEU A 58 ? GLU A 153 LEU A 167 1 ? 15 HELX_P HELX_P5 AA5 ASN A 76 ? GLY A 88 ? ASN A 185 GLY A 197 1 ? 13 HELX_P HELX_P6 AA6 GLU A 89 ? LYS A 101 ? GLU A 198 LYS A 210 1 ? 13 HELX_P HELX_P7 AA7 SER A 156 ? PHE A 168 ? SER A 265 PHE A 277 1 ? 13 HELX_P HELX_P8 AA8 VAL A 176 ? GLU A 188 ? VAL A 285 GLU A 297 1 ? 13 HELX_P HELX_P9 AA9 LYS A 198 ? LEU A 213 ? LYS A 307 LEU A 322 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DT 1 O4 ? ? ? 1_555 C DA 14 N6 ? ? C DT 1 D DA 14 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog2 hydrog ? ? B DT 1 N3 ? ? ? 1_555 C DA 15 N1 ? ? C DT 1 D DA 15 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog3 hydrog ? ? B DT 2 N3 ? ? ? 1_555 C DA 14 N1 ? ? C DT 2 D DA 14 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog4 hydrog ? ? B DT 3 N3 ? ? ? 1_555 C DA 13 N1 ? ? C DT 3 D DA 13 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog5 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 12 N1 ? ? C DT 4 D DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 12 N6 ? ? C DT 4 D DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 11 N2 ? ? C DC 5 D DG 11 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog8 hydrog ? ? B DC 6 N3 ? ? ? 1_555 C DG 10 N1 ? ? C DC 6 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 6 N4 ? ? ? 1_555 C DG 10 O6 ? ? C DC 6 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DC 6 O2 ? ? ? 1_555 C DG 10 N2 ? ? C DC 6 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 7 N3 ? ? ? 1_555 C DG 9 N1 ? ? C DC 7 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 7 N4 ? ? ? 1_555 C DG 9 O6 ? ? C DC 7 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 7 O2 ? ? ? 1_555 C DG 9 N2 ? ? C DC 7 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 8 N3 ? ? C DG 8 D DC 8 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog15 hydrog ? ? B DC 9 N3 ? ? ? 1_555 C DG 7 N1 ? ? C DC 9 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 9 N4 ? ? ? 1_555 C DG 7 O6 ? ? C DC 9 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 9 O2 ? ? ? 1_555 C DG 7 N2 ? ? C DC 9 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C DG 6 N1 ? ? C DC 10 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DG 6 O6 ? ? C DC 10 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C DG 6 N2 ? ? C DC 10 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DA 11 N1 ? ? ? 1_555 C DT 5 N3 ? ? C DA 11 D DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DA 11 N6 ? ? ? 1_555 C DT 5 O4 ? ? C DA 11 D DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DA 12 N6 ? ? ? 1_555 C DT 3 O4 ? ? C DA 12 D DT 3 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog24 hydrog ? ? B DA 12 N1 ? ? ? 1_555 C DT 4 N3 ? ? C DA 12 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DA 12 N6 ? ? ? 1_555 C DT 4 O4 ? ? C DA 12 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DA 14 N6 ? ? ? 1_555 C DT 1 O4 ? ? C DA 14 D DT 1 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog27 hydrog ? ? B DA 14 N1 ? ? ? 1_555 C DT 2 N3 ? ? C DA 14 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DA 14 N6 ? ? ? 1_555 C DT 2 O4 ? ? C DA 14 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DA 15 N1 ? ? ? 1_555 C DT 1 N3 ? ? C DA 15 D DT 1 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASN 42 A . ? ASN 151 A VAL 43 A ? VAL 152 A 1 -4.38 2 ASP 154 A . ? ASP 263 A LYS 155 A ? LYS 264 A 1 -0.87 3 ILE 175 A . ? ILE 284 A VAL 176 A ? VAL 285 A 1 -9.81 4 GLU 192 A . ? GLU 301 A ASP 193 A ? ASP 302 A 1 -1.16 5 ASP 193 A . ? ASP 302 A LEU 194 A ? LEU 303 A 1 3.63 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 62 ? ALA A 65 ? SER A 171 ALA A 174 AA1 2 ARG A 68 ? THR A 70 ? ARG A 177 THR A 179 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ALA _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 65 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ALA _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 174 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ARG _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 68 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ARG _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 177 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 135 ? ? -56.32 100.01 2 1 ALA A 136 ? ? -127.82 -151.15 3 1 VAL A 152 ? ? -124.17 -161.08 4 1 HIS A 181 ? ? 46.48 -122.29 5 1 LEU A 186 ? ? -14.43 -67.63 6 1 GLU A 198 ? ? -102.84 55.99 7 1 LYS A 264 ? ? -124.63 -77.89 8 1 LEU A 266 ? ? -66.53 -74.80 9 1 VAL A 285 ? ? -135.11 -35.34 10 1 GLU A 297 ? ? -113.79 -77.04 11 1 LYS A 305 ? ? 66.98 -63.17 12 1 LYS A 307 ? ? 68.74 -54.96 13 1 LEU A 325 ? ? 33.90 64.56 14 1 LEU A 327 ? ? -102.64 78.25 15 1 HIS A 332 ? ? 39.43 -128.13 16 1 THR A 334 ? ? 61.00 73.61 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' 'Chain A DBD1' refined 83.8031 53.4828 35.0096 0.6918 ? -0.1796 ? 0.0979 ? 1.2381 ? 0.0652 ? 1.0604 ? 2.0263 ? -0.9628 ? -0.8895 ? 2.2484 ? 1.6129 ? 3.4846 ? 0.5564 ? -0.5425 ? 1.3327 ? 0.2353 ? -0.3842 ? 0.1302 ? -0.2326 ? 0.5871 ? 0.0031 ? 2 'X-RAY DIFFRACTION' 'Chain B DBD2' refined 77.9595 59.9386 22.9192 1.2116 ? -0.1994 ? -0.2851 ? 1.4700 ? 0.6217 ? 1.4905 ? 0.7575 ? -0.7037 ? -0.6940 ? 1.8902 ? 0.8522 ? 0.5151 ? -0.6176 ? 0.0013 ? -0.3546 ? 0.1614 ? -1.1597 ? 0.7585 ? -1.5889 ? 1.3951 ? -0.5859 ? 3 'X-RAY DIFFRACTION' DNA refined 83.3691 44.9115 20.0478 0.6008 ? -0.0104 ? 0.2425 ? 2.1107 ? 0.1542 ? 0.6669 ? 1.3827 ? -0.6634 ? -1.5012 ? 2.2646 ? 0.6250 ? 1.4964 ? 0.3502 ? 0.7296 ? 0.0225 ? -0.6450 ? -0.4411 ? 0.0363 ? -0.0330 ? 0.6583 ? 0.0950 ? 4 'X-RAY DIFFRACTION' DNA refined 84.0661 42.7745 20.5193 0.6602 ? -0.1571 ? 0.0965 ? 1.7944 ? 0.1439 ? 0.8922 ? 3.5558 ? 0.1874 ? 0.3045 ? 1.9480 ? -1.5075 ? 1.1162 ? 1.1466 ? 0.6465 ? 0.2202 ? -0.3505 ? -0.7648 ? -0.1992 ? 0.3081 ? 0.6035 ? 0.7165 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? D 1 ? ? D 15 ? ;chain 'D' and (resid 1 through 15 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? B 0 ? ? B 0 ? ;chain 'B' and (resid 259 through 341 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? C 0 ? ? C 0 ? ;chain 'C' and (resid 1 through 15 ) ; 4 'X-RAY DIFFRACTION' 4 ? ? D 0 ? ? D 0 ? ;chain 'D' and (resid 1 through 15 ) ; # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 213 ? A GLU 104 2 1 Y 1 A TYR 214 ? A TYR 105 3 1 Y 1 A GLU 215 ? A GLU 106 4 1 Y 1 A GLN 216 ? A GLN 107 5 1 Y 1 A GLU 217 ? A GLU 108 6 1 Y 1 A PHE 218 ? A PHE 109 7 1 Y 1 A ASP 219 ? A ASP 110 8 1 Y 1 A PHE 220 ? A PHE 111 9 1 Y 1 A ILE 221 ? A ILE 112 10 1 Y 1 A LYS 222 ? A LYS 113 11 1 Y 1 A SER 223 ? A SER 114 12 1 Y 1 A TYR 224 ? A TYR 115 13 1 Y 1 A SER 225 ? A SER 116 14 1 Y 1 A ILE 226 ? A ILE 117 15 1 Y 1 A GLU 227 ? A GLU 118 16 1 Y 1 A ASP 228 ? A ASP 119 17 1 Y 1 A HIS 229 ? A HIS 120 18 1 Y 1 A ILE 230 ? A ILE 121 19 1 Y 1 A ILE 231 ? A ILE 122 20 1 Y 1 A LYS 232 ? A LYS 123 21 1 Y 1 A SER 233 ? A SER 124 22 1 Y 1 A ASN 234 ? A ASN 125 23 1 Y 1 A THR 235 ? A THR 126 24 1 Y 1 A GLY 236 ? A GLY 127 25 1 Y 1 A PRO 237 ? A PRO 128 26 1 Y 1 A ASN 238 ? A ASN 129 27 1 Y 1 A GLY 239 ? A GLY 130 28 1 Y 1 A HIS 240 ? A HIS 131 29 1 Y 1 A PRO 241 ? A PRO 132 30 1 Y 1 A ASP 242 ? A ASP 133 31 1 Y 1 A MET 243 ? A MET 134 32 1 Y 1 A CYS 244 ? A CYS 135 33 1 Y 1 A PHE 245 ? A PHE 136 34 1 Y 1 A VAL 246 ? A VAL 137 35 1 Y 1 A GLU 247 ? A GLU 138 36 1 Y 1 A LEU 248 ? A LEU 139 37 1 Y 1 A PRO 249 ? A PRO 140 38 1 Y 1 A GLY 250 ? A GLY 141 39 1 Y 1 A VAL 251 ? A VAL 142 40 1 Y 1 A GLU 252 ? A GLU 143 41 1 Y 1 A PHE 253 ? A PHE 144 42 1 Y 1 A ARG 254 ? A ARG 145 43 1 Y 1 A ALA 255 ? A ALA 146 44 1 Y 1 A ALA 256 ? A ALA 147 45 1 Y 1 A SER 257 ? A SER 148 46 1 Y 1 A VAL 258 ? A VAL 149 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 ILE N N N N 301 ILE CA C N S 302 ILE C C N N 303 ILE O O N N 304 ILE CB C N S 305 ILE CG1 C N N 306 ILE CG2 C N N 307 ILE CD1 C N N 308 ILE OXT O N N 309 ILE H H N N 310 ILE H2 H N N 311 ILE HA H N N 312 ILE HB H N N 313 ILE HG12 H N N 314 ILE HG13 H N N 315 ILE HG21 H N N 316 ILE HG22 H N N 317 ILE HG23 H N N 318 ILE HD11 H N N 319 ILE HD12 H N N 320 ILE HD13 H N N 321 ILE HXT H N N 322 LEU N N N N 323 LEU CA C N S 324 LEU C C N N 325 LEU O O N N 326 LEU CB C N N 327 LEU CG C N N 328 LEU CD1 C N N 329 LEU CD2 C N N 330 LEU OXT O N N 331 LEU H H N N 332 LEU H2 H N N 333 LEU HA H N N 334 LEU HB2 H N N 335 LEU HB3 H N N 336 LEU HG H N N 337 LEU HD11 H N N 338 LEU HD12 H N N 339 LEU HD13 H N N 340 LEU HD21 H N N 341 LEU HD22 H N N 342 LEU HD23 H N N 343 LEU HXT H N N 344 LYS N N N N 345 LYS CA C N S 346 LYS C C N N 347 LYS O O N N 348 LYS CB C N N 349 LYS CG C N N 350 LYS CD C N N 351 LYS CE C N N 352 LYS NZ N N N 353 LYS OXT O N N 354 LYS H H N N 355 LYS H2 H N N 356 LYS HA H N N 357 LYS HB2 H N N 358 LYS HB3 H N N 359 LYS HG2 H N N 360 LYS HG3 H N N 361 LYS HD2 H N N 362 LYS HD3 H N N 363 LYS HE2 H N N 364 LYS HE3 H N N 365 LYS HZ1 H N N 366 LYS HZ2 H N N 367 LYS HZ3 H N N 368 LYS HXT H N N 369 MET N N N N 370 MET CA C N S 371 MET C C N N 372 MET O O N N 373 MET CB C N N 374 MET CG C N N 375 MET SD S N N 376 MET CE C N N 377 MET OXT O N N 378 MET H H N N 379 MET H2 H N N 380 MET HA H N N 381 MET HB2 H N N 382 MET HB3 H N N 383 MET HG2 H N N 384 MET HG3 H N N 385 MET HE1 H N N 386 MET HE2 H N N 387 MET HE3 H N N 388 MET HXT H N N 389 PHE N N N N 390 PHE CA C N S 391 PHE C C N N 392 PHE O O N N 393 PHE CB C N N 394 PHE CG C Y N 395 PHE CD1 C Y N 396 PHE CD2 C Y N 397 PHE CE1 C Y N 398 PHE CE2 C Y N 399 PHE CZ C Y N 400 PHE OXT O N N 401 PHE H H N N 402 PHE H2 H N N 403 PHE HA H N N 404 PHE HB2 H N N 405 PHE HB3 H N N 406 PHE HD1 H N N 407 PHE HD2 H N N 408 PHE HE1 H N N 409 PHE HE2 H N N 410 PHE HZ H N N 411 PHE HXT H N N 412 PRO N N N N 413 PRO CA C N S 414 PRO C C N N 415 PRO O O N N 416 PRO CB C N N 417 PRO CG C N N 418 PRO CD C N N 419 PRO OXT O N N 420 PRO H H N N 421 PRO HA H N N 422 PRO HB2 H N N 423 PRO HB3 H N N 424 PRO HG2 H N N 425 PRO HG3 H N N 426 PRO HD2 H N N 427 PRO HD3 H N N 428 PRO HXT H N N 429 SER N N N N 430 SER CA C N S 431 SER C C N N 432 SER O O N N 433 SER CB C N N 434 SER OG O N N 435 SER OXT O N N 436 SER H H N N 437 SER H2 H N N 438 SER HA H N N 439 SER HB2 H N N 440 SER HB3 H N N 441 SER HG H N N 442 SER HXT H N N 443 THR N N N N 444 THR CA C N S 445 THR C C N N 446 THR O O N N 447 THR CB C N R 448 THR OG1 O N N 449 THR CG2 C N N 450 THR OXT O N N 451 THR H H N N 452 THR H2 H N N 453 THR HA H N N 454 THR HB H N N 455 THR HG1 H N N 456 THR HG21 H N N 457 THR HG22 H N N 458 THR HG23 H N N 459 THR HXT H N N 460 TRP N N N N 461 TRP CA C N S 462 TRP C C N N 463 TRP O O N N 464 TRP CB C N N 465 TRP CG C Y N 466 TRP CD1 C Y N 467 TRP CD2 C Y N 468 TRP NE1 N Y N 469 TRP CE2 C Y N 470 TRP CE3 C Y N 471 TRP CZ2 C Y N 472 TRP CZ3 C Y N 473 TRP CH2 C Y N 474 TRP OXT O N N 475 TRP H H N N 476 TRP H2 H N N 477 TRP HA H N N 478 TRP HB2 H N N 479 TRP HB3 H N N 480 TRP HD1 H N N 481 TRP HE1 H N N 482 TRP HE3 H N N 483 TRP HZ2 H N N 484 TRP HZ3 H N N 485 TRP HH2 H N N 486 TRP HXT H N N 487 TYR N N N N 488 TYR CA C N S 489 TYR C C N N 490 TYR O O N N 491 TYR CB C N N 492 TYR CG C Y N 493 TYR CD1 C Y N 494 TYR CD2 C Y N 495 TYR CE1 C Y N 496 TYR CE2 C Y N 497 TYR CZ C Y N 498 TYR OH O N N 499 TYR OXT O N N 500 TYR H H N N 501 TYR H2 H N N 502 TYR HA H N N 503 TYR HB2 H N N 504 TYR HB3 H N N 505 TYR HD1 H N N 506 TYR HD2 H N N 507 TYR HE1 H N N 508 TYR HE2 H N N 509 TYR HH H N N 510 TYR HXT H N N 511 VAL N N N N 512 VAL CA C N S 513 VAL C C N N 514 VAL O O N N 515 VAL CB C N N 516 VAL CG1 C N N 517 VAL CG2 C N N 518 VAL OXT O N N 519 VAL H H N N 520 VAL H2 H N N 521 VAL HA H N N 522 VAL HB H N N 523 VAL HG11 H N N 524 VAL HG12 H N N 525 VAL HG13 H N N 526 VAL HG21 H N N 527 VAL HG22 H N N 528 VAL HG23 H N N 529 VAL HXT H N N 530 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 ILE N CA sing N N 299 ILE N H sing N N 300 ILE N H2 sing N N 301 ILE CA C sing N N 302 ILE CA CB sing N N 303 ILE CA HA sing N N 304 ILE C O doub N N 305 ILE C OXT sing N N 306 ILE CB CG1 sing N N 307 ILE CB CG2 sing N N 308 ILE CB HB sing N N 309 ILE CG1 CD1 sing N N 310 ILE CG1 HG12 sing N N 311 ILE CG1 HG13 sing N N 312 ILE CG2 HG21 sing N N 313 ILE CG2 HG22 sing N N 314 ILE CG2 HG23 sing N N 315 ILE CD1 HD11 sing N N 316 ILE CD1 HD12 sing N N 317 ILE CD1 HD13 sing N N 318 ILE OXT HXT sing N N 319 LEU N CA sing N N 320 LEU N H sing N N 321 LEU N H2 sing N N 322 LEU CA C sing N N 323 LEU CA CB sing N N 324 LEU CA HA sing N N 325 LEU C O doub N N 326 LEU C OXT sing N N 327 LEU CB CG sing N N 328 LEU CB HB2 sing N N 329 LEU CB HB3 sing N N 330 LEU CG CD1 sing N N 331 LEU CG CD2 sing N N 332 LEU CG HG sing N N 333 LEU CD1 HD11 sing N N 334 LEU CD1 HD12 sing N N 335 LEU CD1 HD13 sing N N 336 LEU CD2 HD21 sing N N 337 LEU CD2 HD22 sing N N 338 LEU CD2 HD23 sing N N 339 LEU OXT HXT sing N N 340 LYS N CA sing N N 341 LYS N H sing N N 342 LYS N H2 sing N N 343 LYS CA C sing N N 344 LYS CA CB sing N N 345 LYS CA HA sing N N 346 LYS C O doub N N 347 LYS C OXT sing N N 348 LYS CB CG sing N N 349 LYS CB HB2 sing N N 350 LYS CB HB3 sing N N 351 LYS CG CD sing N N 352 LYS CG HG2 sing N N 353 LYS CG HG3 sing N N 354 LYS CD CE sing N N 355 LYS CD HD2 sing N N 356 LYS CD HD3 sing N N 357 LYS CE NZ sing N N 358 LYS CE HE2 sing N N 359 LYS CE HE3 sing N N 360 LYS NZ HZ1 sing N N 361 LYS NZ HZ2 sing N N 362 LYS NZ HZ3 sing N N 363 LYS OXT HXT sing N N 364 MET N CA sing N N 365 MET N H sing N N 366 MET N H2 sing N N 367 MET CA C sing N N 368 MET CA CB sing N N 369 MET CA HA sing N N 370 MET C O doub N N 371 MET C OXT sing N N 372 MET CB CG sing N N 373 MET CB HB2 sing N N 374 MET CB HB3 sing N N 375 MET CG SD sing N N 376 MET CG HG2 sing N N 377 MET CG HG3 sing N N 378 MET SD CE sing N N 379 MET CE HE1 sing N N 380 MET CE HE2 sing N N 381 MET CE HE3 sing N N 382 MET OXT HXT sing N N 383 PHE N CA sing N N 384 PHE N H sing N N 385 PHE N H2 sing N N 386 PHE CA C sing N N 387 PHE CA CB sing N N 388 PHE CA HA sing N N 389 PHE C O doub N N 390 PHE C OXT sing N N 391 PHE CB CG sing N N 392 PHE CB HB2 sing N N 393 PHE CB HB3 sing N N 394 PHE CG CD1 doub Y N 395 PHE CG CD2 sing Y N 396 PHE CD1 CE1 sing Y N 397 PHE CD1 HD1 sing N N 398 PHE CD2 CE2 doub Y N 399 PHE CD2 HD2 sing N N 400 PHE CE1 CZ doub Y N 401 PHE CE1 HE1 sing N N 402 PHE CE2 CZ sing Y N 403 PHE CE2 HE2 sing N N 404 PHE CZ HZ sing N N 405 PHE OXT HXT sing N N 406 PRO N CA sing N N 407 PRO N CD sing N N 408 PRO N H sing N N 409 PRO CA C sing N N 410 PRO CA CB sing N N 411 PRO CA HA sing N N 412 PRO C O doub N N 413 PRO C OXT sing N N 414 PRO CB CG sing N N 415 PRO CB HB2 sing N N 416 PRO CB HB3 sing N N 417 PRO CG CD sing N N 418 PRO CG HG2 sing N N 419 PRO CG HG3 sing N N 420 PRO CD HD2 sing N N 421 PRO CD HD3 sing N N 422 PRO OXT HXT sing N N 423 SER N CA sing N N 424 SER N H sing N N 425 SER N H2 sing N N 426 SER CA C sing N N 427 SER CA CB sing N N 428 SER CA HA sing N N 429 SER C O doub N N 430 SER C OXT sing N N 431 SER CB OG sing N N 432 SER CB HB2 sing N N 433 SER CB HB3 sing N N 434 SER OG HG sing N N 435 SER OXT HXT sing N N 436 THR N CA sing N N 437 THR N H sing N N 438 THR N H2 sing N N 439 THR CA C sing N N 440 THR CA CB sing N N 441 THR CA HA sing N N 442 THR C O doub N N 443 THR C OXT sing N N 444 THR CB OG1 sing N N 445 THR CB CG2 sing N N 446 THR CB HB sing N N 447 THR OG1 HG1 sing N N 448 THR CG2 HG21 sing N N 449 THR CG2 HG22 sing N N 450 THR CG2 HG23 sing N N 451 THR OXT HXT sing N N 452 TRP N CA sing N N 453 TRP N H sing N N 454 TRP N H2 sing N N 455 TRP CA C sing N N 456 TRP CA CB sing N N 457 TRP CA HA sing N N 458 TRP C O doub N N 459 TRP C OXT sing N N 460 TRP CB CG sing N N 461 TRP CB HB2 sing N N 462 TRP CB HB3 sing N N 463 TRP CG CD1 doub Y N 464 TRP CG CD2 sing Y N 465 TRP CD1 NE1 sing Y N 466 TRP CD1 HD1 sing N N 467 TRP CD2 CE2 doub Y N 468 TRP CD2 CE3 sing Y N 469 TRP NE1 CE2 sing Y N 470 TRP NE1 HE1 sing N N 471 TRP CE2 CZ2 sing Y N 472 TRP CE3 CZ3 doub Y N 473 TRP CE3 HE3 sing N N 474 TRP CZ2 CH2 doub Y N 475 TRP CZ2 HZ2 sing N N 476 TRP CZ3 CH2 sing Y N 477 TRP CZ3 HZ3 sing N N 478 TRP CH2 HH2 sing N N 479 TRP OXT HXT sing N N 480 TYR N CA sing N N 481 TYR N H sing N N 482 TYR N H2 sing N N 483 TYR CA C sing N N 484 TYR CA CB sing N N 485 TYR CA HA sing N N 486 TYR C O doub N N 487 TYR C OXT sing N N 488 TYR CB CG sing N N 489 TYR CB HB2 sing N N 490 TYR CB HB3 sing N N 491 TYR CG CD1 doub Y N 492 TYR CG CD2 sing Y N 493 TYR CD1 CE1 sing Y N 494 TYR CD1 HD1 sing N N 495 TYR CD2 CE2 doub Y N 496 TYR CD2 HD2 sing N N 497 TYR CE1 CZ doub Y N 498 TYR CE1 HE1 sing N N 499 TYR CE2 CZ sing Y N 500 TYR CE2 HE2 sing N N 501 TYR CZ OH sing N N 502 TYR OH HH sing N N 503 TYR OXT HXT sing N N 504 VAL N CA sing N N 505 VAL N H sing N N 506 VAL N H2 sing N N 507 VAL CA C sing N N 508 VAL CA CB sing N N 509 VAL CA HA sing N N 510 VAL C O doub N N 511 VAL C OXT sing N N 512 VAL CB CG1 sing N N 513 VAL CB CG2 sing N N 514 VAL CB HB sing N N 515 VAL CG1 HG11 sing N N 516 VAL CG1 HG12 sing N N 517 VAL CG1 HG13 sing N N 518 VAL CG2 HG21 sing N N 519 VAL CG2 HG22 sing N N 520 VAL CG2 HG23 sing N N 521 VAL OXT HXT sing N N 522 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4YO2 'double helix' 4YO2 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DT 1 1_555 C DA 15 1_555 -0.647 0.406 0.917 -16.383 -20.540 6.048 1 C_DT1:DA15_D C 1 ? D 15 ? ? ? 1 B DT 2 1_555 C DA 14 1_555 -1.679 0.042 0.557 -6.558 -10.064 1.618 2 C_DT2:DA14_D C 2 ? D 14 ? ? ? 1 B DT 3 1_555 C DA 13 1_555 -0.148 0.374 0.728 -9.281 -18.609 -1.619 3 C_DT3:DA13_D C 3 ? D 13 ? ? ? 1 B DT 4 1_555 C DA 12 1_555 -0.499 0.080 0.364 -16.771 -4.978 3.028 4 C_DT4:DA12_D C 4 ? D 12 ? 20 1 1 B DC 5 1_555 C DG 11 1_555 -0.303 0.346 -0.133 -5.114 -0.460 14.583 5 C_DC5:DG11_D C 5 ? D 11 ? ? 1 1 B DC 6 1_555 C DG 10 1_555 0.046 -0.565 0.238 -0.647 -4.558 -5.616 6 C_DC6:DG10_D C 6 ? D 10 ? 19 1 1 B DC 7 1_555 C DG 9 1_555 0.581 -0.174 0.295 -2.836 2.539 -10.632 7 C_DC7:DG9_D C 7 ? D 9 ? 19 1 1 B DG 8 1_555 C DC 8 1_555 0.054 0.602 0.190 14.880 1.514 19.971 8 C_DG8:DC8_D C 8 ? D 8 ? ? 1 1 B DC 9 1_555 C DG 7 1_555 -0.256 -0.338 0.577 10.474 -25.189 -16.404 9 C_DC9:DG7_D C 9 ? D 7 ? 19 1 1 B DC 10 1_555 C DG 6 1_555 -0.627 0.006 0.094 10.264 9.419 8.749 10 C_DC10:DG6_D C 10 ? D 6 ? 19 1 1 B DA 11 1_555 C DT 5 1_555 1.039 -0.084 0.527 18.607 -0.185 3.598 11 C_DA11:DT5_D C 11 ? D 5 ? 20 1 1 B DA 12 1_555 C DT 4 1_555 0.088 0.209 0.796 18.270 -23.338 -4.634 12 C_DA12:DT4_D C 12 ? D 4 ? 20 1 1 B DA 14 1_555 C DT 2 1_555 -0.863 0.027 0.293 -4.602 -10.941 0.420 13 C_DA14:DT2_D C 14 ? D 2 ? 20 1 1 B DA 15 1_555 C DT 1 1_555 1.640 -0.247 1.113 0.451 -22.872 1.416 14 C_DA15:DT1_D C 15 ? D 1 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DT 1 1_555 C DA 15 1_555 B DT 2 1_555 C DA 14 1_555 0.091 -0.469 2.771 2.216 3.412 34.189 -1.239 0.136 2.713 5.778 -3.753 34.423 1 CC_DT1DT2:DA14DA15_DD C 1 ? D 15 ? C 2 ? D 14 ? 1 B DT 2 1_555 C DA 14 1_555 B DT 3 1_555 C DA 13 1_555 -0.253 -0.082 3.415 0.840 -13.772 46.349 1.029 0.378 3.306 -17.058 -1.041 48.250 2 CC_DT2DT3:DA13DA14_DD C 2 ? D 14 ? C 3 ? D 13 ? 1 B DT 3 1_555 C DA 13 1_555 B DT 4 1_555 C DA 12 1_555 0.914 -0.030 3.302 4.940 -4.955 39.583 0.535 -0.753 3.367 -7.248 -7.226 40.172 3 CC_DT3DT4:DA12DA13_DD C 3 ? D 13 ? C 4 ? D 12 ? 1 B DT 4 1_555 C DA 12 1_555 B DC 5 1_555 C DG 11 1_555 1.325 -0.296 3.027 5.379 11.725 25.932 -3.061 -1.522 2.844 24.306 -11.152 28.914 4 CC_DT4DC5:DG11DA12_DD C 4 ? D 12 ? C 5 ? D 11 ? 1 B DC 5 1_555 C DG 11 1_555 B DC 6 1_555 C DG 10 1_555 -2.257 1.045 3.505 -5.986 -9.719 41.379 2.481 2.441 3.464 -13.449 8.283 42.858 5 CC_DC5DC6:DG10DG11_DD C 5 ? D 11 ? C 6 ? D 10 ? 1 B DC 6 1_555 C DG 10 1_555 B DC 7 1_555 C DG 9 1_555 0.151 0.204 3.426 -2.165 -2.323 40.117 0.572 -0.476 3.397 -3.380 3.151 40.238 6 CC_DC6DC7:DG9DG10_DD C 6 ? D 10 ? C 7 ? D 9 ? 1 B DC 7 1_555 C DG 9 1_555 B DG 8 1_555 C DC 8 1_555 1.525 -0.228 3.073 -0.603 8.217 21.080 -3.339 -4.091 2.745 21.435 1.573 22.616 7 CC_DC7DG8:DC8DG9_DD C 7 ? D 9 ? C 8 ? D 8 ? 1 B DG 8 1_555 C DC 8 1_555 B DC 9 1_555 C DG 7 1_555 -2.222 0.046 3.299 -8.365 -7.369 37.550 1.026 2.233 3.622 -11.150 12.657 39.112 8 CC_DG8DC9:DG7DC8_DD C 8 ? D 8 ? C 9 ? D 7 ? 1 B DC 9 1_555 C DG 7 1_555 B DC 10 1_555 C DG 6 1_555 2.266 0.106 3.535 5.287 -8.078 34.637 1.476 -2.822 3.713 -13.252 -8.673 35.918 9 CC_DC9DC10:DG6DG7_DD C 9 ? D 7 ? C 10 ? D 6 ? 1 B DC 10 1_555 C DG 6 1_555 B DA 11 1_555 C DT 5 1_555 -1.024 -0.170 3.039 -3.480 3.956 38.799 -0.700 1.136 3.085 5.922 5.210 39.141 10 CC_DC10DA11:DT5DG6_DD C 10 ? D 6 ? C 11 ? D 5 ? 1 B DA 11 1_555 C DT 5 1_555 B DA 12 1_555 C DT 4 1_555 -0.593 -0.518 3.277 -2.634 -7.040 34.819 0.203 0.578 3.349 -11.597 4.340 35.596 11 CC_DA11DA12:DT4DT5_DD C 11 ? D 5 ? C 12 ? D 4 ? 1 B DA 12 1_555 C DT 4 1_555 B DA 14 1_555 C DT 2 1_555 0.040 -1.659 6.713 3.211 -1.835 71.938 -1.285 0.186 6.745 -1.561 -2.732 72.020 12 CC_DA12DA14:DT2DT4_DD C 12 ? D 4 ? C 14 ? D 2 ? 1 B DA 14 1_555 C DT 2 1_555 B DA 15 1_555 C DT 1 1_555 -0.054 -0.341 3.150 -7.784 1.549 50.383 -0.500 -0.460 3.115 1.806 9.078 50.963 13 CC_DA14DA15:DT1DT2_DD C 14 ? D 2 ? C 15 ? D 1 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1CF7 _pdbx_initial_refinement_model.details ? # _pdbx_reflns_twin.domain_id 1 _pdbx_reflns_twin.crystal_id 1 _pdbx_reflns_twin.diffrn_id 1 _pdbx_reflns_twin.fraction 0.220 _pdbx_reflns_twin.operator -h,-k,l _pdbx_reflns_twin.type ? _pdbx_reflns_twin.mean_F_square_over_mean_F2 ? _pdbx_reflns_twin.mean_I2_over_mean_I_square ? # _atom_sites.entry_id 4YO2 _atom_sites.fract_transf_matrix[1][1] 0.010118 _atom_sites.fract_transf_matrix[1][2] 0.005842 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011684 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008218 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_