HEADER TRANSFERASE 11-MAR-15 4YO4 TITLE CRYSTAL STRUCTURE OF DAPK1 CATALYTIC DOMAIN IN COMPLEX WITH THE HINGE TITLE 2 BINDING FRAGMENT PHTHALAZINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEATH-ASSOCIATED PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN (UNP RESIDUES 2-285); COMPND 5 SYNONYM: DAP KINASE 1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DAPK1, DAPK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.L.GRUM-TOKARS,S.M.ROY,G.MINASOV,W.F.ANDERSON,D.M.WATTERSON REVDAT 5 27-SEP-23 4YO4 1 REMARK REVDAT 4 18-DEC-19 4YO4 1 REMARK REVDAT 3 22-NOV-17 4YO4 1 REMARK REVDAT 2 06-SEP-17 4YO4 1 SOURCE REMARK REVDAT 1 06-MAY-15 4YO4 0 JRNL AUTH V.L.GRUM-TOKARS,G.MINASOV,S.M.ROY,W.F.ANDERSON,D.M.WATTERSON JRNL TITL CRYSTAL STRUCTURE OF DAPK1 CATALYTIC DOMAIN IN COMPLEX WITH JRNL TITL 2 HINGE BINDING FRAGMENTS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.M.WATTERSON,V.L.GRUM-TOKARS,S.M.ROY,J.P.SCHAVOCKY, REMARK 1 AUTH 2 B.D.BRADARIC,A.D.BACHSTETTER,B.XING,E.DIMAYUGA,F.SAEED, REMARK 1 AUTH 3 H.ZHANG,A.STANISZEWSKI,J.C.PELLETIER,G.MINASOV,W.F.ANDERSON, REMARK 1 AUTH 4 O.ARANCIO,L.J.VAN ELDIK REMARK 1 TITL DEVELOPMENT OF NOVEL IN VIVO CHEMICAL PROBES TO ADDRESS CNS REMARK 1 TITL 2 PROTEIN KINASE INVOLVEMENT IN SYNAPTIC DYSFUNCTION. REMARK 1 REF PLOS ONE V. 8 66226 2013 REMARK 1 REFN ESSN 1932-6203 REMARK 1 PMID 23840427 REMARK 1 REFERENCE 2 REMARK 1 AUTH L.K.MCNAMARA,J.S.BRUNZELLE,J.P.SCHAVOCKY,D.M.WATTERSON, REMARK 1 AUTH 2 V.GRUM-TOKARS REMARK 1 TITL SITE-DIRECTED MUTAGENESIS OF THE GLYCINE-RICH LOOP OF DEATH REMARK 1 TITL 2 ASSOCIATED PROTEIN KINASE (DAPK) IDENTIFIES IT AS A KEY REMARK 1 TITL 3 STRUCTURE FOR CATALYTIC ACTIVITY. REMARK 1 REF BIOCHIM. BIOPHYS. ACTA V.1813 1068 2011 REMARK 1 REFN ISSN 0006-3002 REMARK 1 PMID 21126544 REMARK 1 DOI 10.1016/J.BBAMCR.2010.11.011 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 32532 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1731 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2447 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2276 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 228 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.75000 REMARK 3 B22 (A**2) : 1.49000 REMARK 3 B33 (A**2) : -0.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2483 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2371 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3368 ; 1.481 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5485 ; 3.520 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 4.180 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;32.182 ;24.839 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 457 ;11.218 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;10.816 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2836 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 566 ; 0.012 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1191 ; 1.551 ; 1.431 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1189 ; 1.535 ; 1.426 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1505 ; 2.365 ; 2.129 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1506 ; 2.364 ; 2.133 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1292 ; 2.482 ; 1.791 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1293 ; 2.481 ; 1.792 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1864 ; 3.921 ; 2.549 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2978 ; 6.358 ;13.002 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2886 ; 6.241 ;12.442 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 49 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8240 -2.9280 2.3320 REMARK 3 T TENSOR REMARK 3 T11: 0.0774 T22: 0.0042 REMARK 3 T33: 0.0941 T12: 0.0065 REMARK 3 T13: -0.0103 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.6866 L22: 1.3688 REMARK 3 L33: 1.5852 L12: 1.0935 REMARK 3 L13: 0.6601 L23: 1.3431 REMARK 3 S TENSOR REMARK 3 S11: 0.0631 S12: -0.0182 S13: -0.1297 REMARK 3 S21: 0.1129 S22: 0.0013 S23: -0.1389 REMARK 3 S31: 0.1488 S32: 0.0006 S33: -0.0645 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6850 8.2290 10.0070 REMARK 3 T TENSOR REMARK 3 T11: 0.0638 T22: 0.0489 REMARK 3 T33: 0.0564 T12: 0.0023 REMARK 3 T13: -0.0018 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.4625 L22: 0.4406 REMARK 3 L33: 0.4637 L12: -0.2465 REMARK 3 L13: -0.4610 L23: 0.2662 REMARK 3 S TENSOR REMARK 3 S11: -0.0074 S12: -0.0652 S13: 0.0161 REMARK 3 S21: -0.0384 S22: 0.0262 S23: -0.0349 REMARK 3 S31: 0.0159 S32: 0.0600 S33: -0.0189 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 167 A 239 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0300 6.1980 19.5040 REMARK 3 T TENSOR REMARK 3 T11: 0.0762 T22: 0.0262 REMARK 3 T33: 0.0708 T12: -0.0033 REMARK 3 T13: -0.0104 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.1797 L22: 0.4714 REMARK 3 L33: 0.5264 L12: 0.1346 REMARK 3 L13: -0.0249 L23: 0.0255 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: 0.0125 S13: -0.0320 REMARK 3 S21: 0.0073 S22: 0.0365 S23: 0.0046 REMARK 3 S31: 0.0192 S32: 0.0043 S33: -0.0607 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 240 A 295 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4270 17.3500 21.7240 REMARK 3 T TENSOR REMARK 3 T11: 0.0775 T22: 0.0189 REMARK 3 T33: 0.0693 T12: 0.0045 REMARK 3 T13: 0.0037 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.2096 L22: 0.6587 REMARK 3 L33: 0.7961 L12: 0.2576 REMARK 3 L13: 0.1545 L23: -0.0762 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: -0.0247 S13: 0.0216 REMARK 3 S21: 0.0247 S22: -0.0419 S23: 0.0132 REMARK 3 S31: -0.0480 S32: -0.0466 S33: 0.0183 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4YO4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207813. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34446 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.53800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1JKS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE, 0.1 M HEPES, REMARK 280 1.6 M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.50200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.26850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.26150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.26850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.50200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.26150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 278 REMARK 465 ASP A 279 REMARK 465 THR A 280 REMARK 465 GLN A 281 REMARK 465 GLN A 282 REMARK 465 ALA A 283 REMARK 465 LEU A 284 REMARK 465 SER A 285 REMARK 465 SER A 286 REMARK 465 ALA A 287 REMARK 465 TRP A 288 REMARK 465 SER A 289 REMARK 465 HIS A 290 REMARK 465 PRO A 291 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 139 37.93 -142.54 REMARK 500 ASP A 161 79.27 62.87 REMARK 500 ILE A 168 78.55 -114.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 628 DISTANCE = 6.41 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4FT A 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YPD RELATED DB: PDB DBREF 4YO4 A 2 285 UNP P53355 DAPK1_HUMAN 2 285 SEQADV 4YO4 SER A 286 UNP P53355 EXPRESSION TAG SEQADV 4YO4 ALA A 287 UNP P53355 EXPRESSION TAG SEQADV 4YO4 TRP A 288 UNP P53355 EXPRESSION TAG SEQADV 4YO4 SER A 289 UNP P53355 EXPRESSION TAG SEQADV 4YO4 HIS A 290 UNP P53355 EXPRESSION TAG SEQADV 4YO4 PRO A 291 UNP P53355 EXPRESSION TAG SEQADV 4YO4 GLN A 292 UNP P53355 EXPRESSION TAG SEQADV 4YO4 PHE A 293 UNP P53355 EXPRESSION TAG SEQADV 4YO4 GLU A 294 UNP P53355 EXPRESSION TAG SEQADV 4YO4 LYS A 295 UNP P53355 EXPRESSION TAG SEQRES 1 A 294 THR VAL PHE ARG GLN GLU ASN VAL ASP ASP TYR TYR ASP SEQRES 2 A 294 THR GLY GLU GLU LEU GLY SER GLY GLN PHE ALA VAL VAL SEQRES 3 A 294 LYS LYS CYS ARG GLU LYS SER THR GLY LEU GLN TYR ALA SEQRES 4 A 294 ALA LYS PHE ILE LYS LYS ARG ARG THR LYS SER SER ARG SEQRES 5 A 294 ARG GLY VAL SER ARG GLU ASP ILE GLU ARG GLU VAL SER SEQRES 6 A 294 ILE LEU LYS GLU ILE GLN HIS PRO ASN VAL ILE THR LEU SEQRES 7 A 294 HIS GLU VAL TYR GLU ASN LYS THR ASP VAL ILE LEU ILE SEQRES 8 A 294 LEU GLU LEU VAL ALA GLY GLY GLU LEU PHE ASP PHE LEU SEQRES 9 A 294 ALA GLU LYS GLU SER LEU THR GLU GLU GLU ALA THR GLU SEQRES 10 A 294 PHE LEU LYS GLN ILE LEU ASN GLY VAL TYR TYR LEU HIS SEQRES 11 A 294 SER LEU GLN ILE ALA HIS PHE ASP LEU LYS PRO GLU ASN SEQRES 12 A 294 ILE MET LEU LEU ASP ARG ASN VAL PRO LYS PRO ARG ILE SEQRES 13 A 294 LYS ILE ILE ASP PHE GLY LEU ALA HIS LYS ILE ASP PHE SEQRES 14 A 294 GLY ASN GLU PHE LYS ASN ILE PHE GLY THR PRO GLU PHE SEQRES 15 A 294 VAL ALA PRO GLU ILE VAL ASN TYR GLU PRO LEU GLY LEU SEQRES 16 A 294 GLU ALA ASP MET TRP SER ILE GLY VAL ILE THR TYR ILE SEQRES 17 A 294 LEU LEU SER GLY ALA SER PRO PHE LEU GLY ASP THR LYS SEQRES 18 A 294 GLN GLU THR LEU ALA ASN VAL SER ALA VAL ASN TYR GLU SEQRES 19 A 294 PHE GLU ASP GLU TYR PHE SER ASN THR SER ALA LEU ALA SEQRES 20 A 294 LYS ASP PHE ILE ARG ARG LEU LEU VAL LYS ASP PRO LYS SEQRES 21 A 294 LYS ARG MET THR ILE GLN ASP SER LEU GLN HIS PRO TRP SEQRES 22 A 294 ILE LYS PRO LYS ASP THR GLN GLN ALA LEU SER SER ALA SEQRES 23 A 294 TRP SER HIS PRO GLN PHE GLU LYS HET CL A 301 1 HET CL A 302 2 HET CL A 303 2 HET CL A 304 2 HET ACT A 305 4 HET SO4 A 306 5 HET 4FT A 307 10 HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETNAM SO4 SULFATE ION HETNAM 4FT PHTHALAZINE FORMUL 2 CL 4(CL 1-) FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 SO4 O4 S 2- FORMUL 8 4FT C8 H6 N2 FORMUL 9 HOH *228(H2 O) HELIX 1 AA1 ASN A 8 ASP A 11 5 4 HELIX 2 AA2 SER A 57 ILE A 71 1 15 HELIX 3 AA3 GLU A 100 LYS A 108 1 9 HELIX 4 AA4 THR A 112 LEU A 133 1 22 HELIX 5 AA5 LYS A 141 GLU A 143 5 3 HELIX 6 AA6 THR A 180 VAL A 184 5 5 HELIX 7 AA7 ALA A 185 ASN A 190 1 6 HELIX 8 AA8 LEU A 196 GLY A 213 1 18 HELIX 9 AA9 THR A 221 VAL A 232 1 12 HELIX 10 AB1 GLU A 237 SER A 242 1 6 HELIX 11 AB2 SER A 245 ARG A 254 1 10 HELIX 12 AB3 ASP A 259 ARG A 263 5 5 HELIX 13 AB4 THR A 265 HIS A 272 1 8 SHEET 1 AA1 5 TYR A 13 SER A 21 0 SHEET 2 AA1 5 ALA A 25 GLU A 32 -1 O LYS A 29 N GLU A 17 SHEET 3 AA1 5 GLN A 38 LYS A 45 -1 O ALA A 41 N LYS A 28 SHEET 4 AA1 5 ASP A 88 GLU A 94 -1 O LEU A 93 N ALA A 40 SHEET 5 AA1 5 LEU A 79 GLU A 84 -1 N HIS A 80 O ILE A 92 SHEET 1 AA2 2 ILE A 135 ALA A 136 0 SHEET 2 AA2 2 HIS A 166 LYS A 167 -1 O HIS A 166 N ALA A 136 SHEET 1 AA3 2 ILE A 145 LEU A 147 0 SHEET 2 AA3 2 ILE A 157 ILE A 159 -1 O LYS A 158 N MET A 146 SITE 1 AC1 1 ARG A 63 SITE 1 AC2 5 LYS A 42 LEU A 93 ASP A 161 4FT A 307 SITE 2 AC2 5 HOH A 487 SITE 1 AC3 6 GLY A 22 GLN A 23 PHE A 24 ALA A 25 SITE 2 AC3 6 HOH A 614 HOH A 620 SITE 1 AC4 3 ASP A 14 THR A 15 PHE A 174 SITE 1 AC5 7 HIS A 80 HIS A 131 SER A 132 ILE A 266 SITE 2 AC5 7 GLN A 267 HOH A 439 HOH A 535 SITE 1 AC6 5 LYS A 86 PHE A 236 LYS A 249 ARG A 253 SITE 2 AC6 5 HOH A 470 SITE 1 AC7 6 ALA A 40 GLU A 94 VAL A 96 MET A 146 SITE 2 AC7 6 CL A 302 HOH A 464 CRYST1 47.004 62.523 88.537 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021275 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015994 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011295 0.00000