HEADER TRANSCRIPTION 12-MAR-15 4YOO TITLE P107 POCKET DOMAIN IN COMPLEX WITH LIN52 P29A PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOBLASTOMA-LIKE PROTEIN 1,RETINOBLASTOMA-LIKE PROTEIN COMPND 3 1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 391-600,UNP RESIDUES 781-972; COMPND 6 SYNONYM: 107 KDA RETINOBLASTOMA-ASSOCIATED PROTEIN,P107,PRB1,107 KDA COMPND 7 RETINOBLASTOMA-ASSOCIATED PROTEIN,P107,PRB1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: LIN52 PEPTIDE; COMPND 11 CHAIN: X; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS CYCLIN BOX POCKET PROTEIN TRANSCRIPTIONAL REGULATOR CELL CYCLE, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.Z.GUILEY,T.J.LIBAN,J.G.FELTHOUSEN,P.RAMANAN,S.TRIPATHI, AUTHOR 2 L.LITOVCHICK,S.M.RUBIN REVDAT 4 04-DEC-19 4YOO 1 REMARK REVDAT 3 20-SEP-17 4YOO 1 SOURCE JRNL REMARK REVDAT 2 20-MAY-15 4YOO 1 JRNL REVDAT 1 13-MAY-15 4YOO 0 JRNL AUTH K.Z.GUILEY,T.J.LIBAN,J.G.FELTHOUSEN,P.RAMANAN,L.LITOVCHICK, JRNL AUTH 2 S.M.RUBIN JRNL TITL STRUCTURAL MECHANISMS OF DREAM COMPLEX ASSEMBLY AND JRNL TITL 2 REGULATION. JRNL REF GENES DEV. V. 29 961 2015 JRNL REFN ISSN 0890-9369 JRNL PMID 25917549 JRNL DOI 10.1101/GAD.257568.114 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 21350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.250 REMARK 3 FREE R VALUE TEST SET COUNT : 2189 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 71.4267 - 6.0360 0.99 1295 147 0.1874 0.2205 REMARK 3 2 6.0360 - 4.7913 0.99 1214 153 0.1793 0.2582 REMARK 3 3 4.7913 - 4.1857 0.98 1176 150 0.1515 0.1838 REMARK 3 4 4.1857 - 3.8030 0.99 1199 152 0.1653 0.1810 REMARK 3 5 3.8030 - 3.5305 0.99 1212 130 0.1801 0.2320 REMARK 3 6 3.5305 - 3.3223 0.99 1198 125 0.1880 0.2281 REMARK 3 7 3.3223 - 3.1559 0.99 1200 134 0.2053 0.2535 REMARK 3 8 3.1559 - 3.0185 0.99 1228 121 0.1997 0.2695 REMARK 3 9 3.0185 - 2.9023 0.99 1185 129 0.2261 0.2636 REMARK 3 10 2.9023 - 2.8022 0.99 1171 151 0.2216 0.3130 REMARK 3 11 2.8022 - 2.7146 1.00 1211 113 0.2392 0.3188 REMARK 3 12 2.7146 - 2.6370 1.00 1206 122 0.2285 0.2759 REMARK 3 13 2.6370 - 2.5675 1.00 1170 150 0.2451 0.3220 REMARK 3 14 2.5675 - 2.5049 1.00 1158 141 0.2472 0.2828 REMARK 3 15 2.5049 - 2.4479 1.00 1212 148 0.2567 0.3133 REMARK 3 16 2.4479 - 2.3958 0.95 1126 123 0.2662 0.3462 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3011 REMARK 3 ANGLE : 1.091 4074 REMARK 3 CHIRALITY : 0.047 461 REMARK 3 PLANARITY : 0.004 507 REMARK 3 DIHEDRAL : 14.564 1110 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 389:485 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.947 122.055 -5.973 REMARK 3 T TENSOR REMARK 3 T11: 0.3024 T22: 0.2207 REMARK 3 T33: 0.2741 T12: -0.0717 REMARK 3 T13: 0.0520 T23: 0.0544 REMARK 3 L TENSOR REMARK 3 L11: 5.3762 L22: 3.2583 REMARK 3 L33: 2.1199 L12: -1.2327 REMARK 3 L13: 1.4311 L23: -0.1650 REMARK 3 S TENSOR REMARK 3 S11: 0.1930 S12: 0.1283 S13: 0.3527 REMARK 3 S21: -0.1141 S22: -0.1494 S23: -0.1616 REMARK 3 S31: -0.0153 S32: -0.0656 S33: -0.0315 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 486:593 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.255 112.878 6.466 REMARK 3 T TENSOR REMARK 3 T11: 0.2460 T22: 0.2168 REMARK 3 T33: 0.2426 T12: -0.0116 REMARK 3 T13: -0.0019 T23: -0.0461 REMARK 3 L TENSOR REMARK 3 L11: 1.8917 L22: 2.9589 REMARK 3 L33: 0.9510 L12: -0.6079 REMARK 3 L13: 0.1526 L23: -1.0803 REMARK 3 S TENSOR REMARK 3 S11: -0.1310 S12: -0.1733 S13: 0.1493 REMARK 3 S21: 0.3776 S22: 0.1088 S23: -0.2157 REMARK 3 S31: -0.1662 S32: 0.0035 S33: 0.0219 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 784:965 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.092 105.724 25.773 REMARK 3 T TENSOR REMARK 3 T11: 0.5694 T22: 0.4575 REMARK 3 T33: 0.2780 T12: 0.0644 REMARK 3 T13: 0.1597 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 3.4297 L22: 2.2828 REMARK 3 L33: 4.3854 L12: 0.2103 REMARK 3 L13: -0.7721 L23: -0.4730 REMARK 3 S TENSOR REMARK 3 S11: -0.0529 S12: -0.7813 S13: -0.0016 REMARK 3 S21: 0.7695 S22: 0.1093 S23: 0.2998 REMARK 3 S31: -0.2314 S32: -0.4218 S33: -0.0285 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN X AND RESID 1:14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.195 105.488 26.728 REMARK 3 T TENSOR REMARK 3 T11: 0.6455 T22: 1.2285 REMARK 3 T33: 0.7717 T12: 0.1221 REMARK 3 T13: 0.2736 T23: 0.1485 REMARK 3 L TENSOR REMARK 3 L11: 6.8859 L22: 2.0362 REMARK 3 L33: 2.8323 L12: -2.7749 REMARK 3 L13: 0.6156 L23: -1.0601 REMARK 3 S TENSOR REMARK 3 S11: 0.1735 S12: -0.1327 S13: 0.2978 REMARK 3 S21: 0.5731 S22: 0.0145 S23: 0.8516 REMARK 3 S31: -0.0890 S32: -0.3818 S33: 0.0894 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YOO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207843. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.5 - 7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.984 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21369 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 71.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, PEG 400 4%, 1.6M AMMONIUM REMARK 280 SULFATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.39500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.39500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.40750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.26500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.40750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.26500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.39500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.40750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.26500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.39500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.40750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.26500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 388 REMARK 465 PRO A 774 REMARK 465 ASN A 775 REMARK 465 ASN A 776 REMARK 465 PHE A 777 REMARK 465 GLU A 778 REMARK 465 THR A 779 REMARK 465 GLY A 780 REMARK 465 ARG A 781 REMARK 465 PRO A 782 REMARK 465 LYS A 783 REMARK 465 SER A 922 REMARK 465 ILE A 923 REMARK 465 LYS A 924 REMARK 465 ASN A 952A REMARK 465 GLN A 952B REMARK 465 ASP A 952C REMARK 465 HIS A 952D REMARK 465 MET A 952E REMARK 465 MET A 952F REMARK 465 ASP A 952G REMARK 465 ALA A 952H REMARK 465 ILE A 966 REMARK 465 LYS A 967 REMARK 465 GLN A 968 REMARK 465 GLN A 969 REMARK 465 GLU X 0 REMARK 465 GLU X 19 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 593 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 856 CG CD CE NZ REMARK 470 ARG A 859 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 885 CG CD CE NZ REMARK 470 LEU A 930 CD2 REMARK 470 HIS A 965 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 858 OG1 THR A 860 1.98 REMARK 500 OD1 ASP A 950 N ALA A 952 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 520 47.11 -90.05 REMARK 500 SER A 565 -59.97 -133.85 REMARK 500 ILE A 592 -64.17 -99.12 REMARK 500 THR A 785 44.19 31.46 REMARK 500 GLN A 862 0.43 -59.37 REMARK 500 GLU A 863 -1.38 -59.62 REMARK 500 LEU A 884 -71.18 -108.52 REMARK 500 ASP X 10 -2.56 -58.54 REMARK 500 ARG X 11 -162.97 -73.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 812 SER A 813 -140.42 REMARK 500 LEU A 816 ARG A 817 -32.49 REMARK 500 TYR A 949 ASP A 950 -133.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1227 DISTANCE = 6.50 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GUX RELATED DB: PDB REMARK 900 E7 COMPLEXED WITH RB REMARK 900 RELATED ID: 4YOZ RELATED DB: PDB REMARK 900 RELATED ID: 4YOS RELATED DB: PDB DBREF 4YOO A 391 780 UNP P28749 RBL1_HUMAN 391 600 DBREF 4YOO A 781 969 UNP P28749 RBL1_HUMAN 781 972 DBREF 4YOO X 0 19 PDB 4YOO 4YOO 0 19 SEQADV 4YOO GLY A 388 UNP P28749 EXPRESSION TAG SEQADV 4YOO GLU A 389 UNP P28749 EXPRESSION TAG SEQADV 4YOO PHE A 390 UNP P28749 EXPRESSION TAG SEQADV 4YOO A UNP P28749 PRO 888 DELETION SEQADV 4YOO A UNP P28749 ARG 889 DELETION SEQADV 4YOO A UNP P28749 GLU 890 DELETION SEQADV 4YOO A UNP P28749 VAL 891 DELETION SEQADV 4YOO A UNP P28749 VAL 892 DELETION SEQADV 4YOO A UNP P28749 ALA 893 DELETION SEQADV 4YOO A UNP P28749 TYR 894 DELETION SEQADV 4YOO A UNP P28749 ASN 895 DELETION SEQADV 4YOO A UNP P28749 LYS 896 DELETION SEQADV 4YOO A UNP P28749 ASN 897 DELETION SEQADV 4YOO A UNP P28749 ILE 898 DELETION SEQADV 4YOO A UNP P28749 ASN 899 DELETION SEQADV 4YOO A UNP P28749 ASP 900 DELETION SEQADV 4YOO A UNP P28749 ASP 901 DELETION SEQADV 4YOO A UNP P28749 PHE 902 DELETION SEQADV 4YOO A UNP P28749 GLU 903 DELETION SEQADV 4YOO A UNP P28749 MET 904 DELETION SEQADV 4YOO A UNP P28749 ILE 905 DELETION SEQADV 4YOO A UNP P28749 ASP 906 DELETION SEQADV 4YOO A UNP P28749 CYS 907 DELETION SEQADV 4YOO A UNP P28749 ASP 908 DELETION SEQADV 4YOO A UNP P28749 LEU 909 DELETION SEQADV 4YOO A UNP P28749 GLU 910 DELETION SEQADV 4YOO A UNP P28749 ASP 911 DELETION SEQADV 4YOO A UNP P28749 ALA 912 DELETION SEQADV 4YOO A UNP P28749 THR 913 DELETION SEQADV 4YOO A UNP P28749 LYS 914 DELETION SEQADV 4YOO A UNP P28749 THR 915 DELETION SEQADV 4YOO A UNP P28749 PRO 916 DELETION SEQADV 4YOO A UNP P28749 ASP 917 DELETION SEQADV 4YOO A UNP P28749 CYS 918 DELETION SEQADV 4YOO A UNP P28749 SER 919 DELETION SEQADV 4YOO A UNP P28749 SER 920 DELETION SEQADV 4YOO A UNP P28749 GLY 921 DELETION SEQADV 4YOO A UNP P28749 PRO 922 DELETION SEQADV 4YOO A UNP P28749 VAL 923 DELETION SEQRES 1 A 369 GLY GLU PHE THR GLN SER VAL SER ARG LEU GLN SER ILE SEQRES 2 A 369 VAL ALA GLY LEU LYS ASN ALA PRO SER ASP GLN LEU ILE SEQRES 3 A 369 ASN ILE PHE GLU SER CYS VAL ARG ASN PRO VAL GLU ASN SEQRES 4 A 369 ILE MET LYS ILE LEU LYS GLY ILE GLY GLU THR PHE CYS SEQRES 5 A 369 GLN HIS TYR THR GLN SER THR ASP GLU GLN PRO GLY SER SEQRES 6 A 369 HIS ILE ASP PHE ALA VAL ASN ARG LEU LYS LEU ALA GLU SEQRES 7 A 369 ILE LEU TYR TYR LYS ILE LEU GLU THR VAL MET VAL GLN SEQRES 8 A 369 GLU THR ARG ARG LEU HIS GLY MET ASP MET SER VAL LEU SEQRES 9 A 369 LEU GLU GLN ASP ILE PHE HIS ARG SER LEU MET ALA CYS SEQRES 10 A 369 CYS LEU GLU ILE VAL LEU PHE ALA TYR SER SER PRO ARG SEQRES 11 A 369 THR PHE PRO TRP ILE ILE GLU VAL LEU ASN LEU GLN PRO SEQRES 12 A 369 PHE TYR PHE TYR LYS VAL ILE GLU VAL VAL ILE ARG SER SEQRES 13 A 369 GLU GLU GLY LEU SER ARG ASP MET VAL LYS HIS LEU ASN SEQRES 14 A 369 SER ILE GLU GLU GLN ILE LEU GLU SER LEU ALA TRP SER SEQRES 15 A 369 HIS ASP SER ALA LEU TRP GLU ALA LEU GLN VAL SER ALA SEQRES 16 A 369 ASN LYS VAL PRO THR CYS GLU GLU VAL ILE PHE PRO ASN SEQRES 17 A 369 ASN PHE GLU THR GLY ARG PRO LYS ARG THR GLY SER LEU SEQRES 18 A 369 ALA LEU PHE TYR ARG LYS VAL TYR HIS LEU ALA SER VAL SEQRES 19 A 369 ARG LEU ARG ASP LEU CYS LEU LYS LEU ASP VAL SER ASN SEQRES 20 A 369 GLU LEU ARG ARG LYS ILE TRP THR CYS PHE GLU PHE THR SEQRES 21 A 369 LEU VAL HIS CYS PRO ASP LEU MET LYS ASP ARG HIS LEU SEQRES 22 A 369 ASP GLN LEU LEU LEU CYS ALA PHE TYR ILE MET ALA LYS SEQRES 23 A 369 VAL THR LYS GLU GLU ARG THR PHE GLN GLU ILE MET LYS SEQRES 24 A 369 SER TYR ARG ASN GLN PRO GLN ALA ASN SER HIS VAL TYR SEQRES 25 A 369 ARG SER VAL LEU LEU LYS SER ILE LYS GLU GLU ARG GLY SEQRES 26 A 369 ASP LEU ILE LYS PHE TYR ASN THR ILE TYR VAL GLY ARG SEQRES 27 A 369 VAL LYS SER PHE ALA LEU LYS TYR ASP LEU ALA ASN GLN SEQRES 28 A 369 ASP HIS MET MET ASP ALA PRO PRO LEU SER PRO PHE PRO SEQRES 29 A 369 HIS ILE LYS GLN GLN SEQRES 1 X 20 GLU ALA SER LEU LEU SER PHE GLU LYS LEU ASP ARG ALA SEQRES 2 X 20 SEP ALA ASP LEU TRP PRO GLU HET SEP X 13 10 HET SO4 A1001 5 HET SO4 A1002 5 HET SO4 A1003 5 HET SO4 A1004 5 HETNAM SEP PHOSPHOSERINE HETNAM SO4 SULFATE ION HETSYN SEP PHOSPHONOSERINE FORMUL 2 SEP C3 H8 N O6 P FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *128(H2 O) HELIX 1 AA1 THR A 391 ALA A 402 1 12 HELIX 2 AA2 SER A 409 SER A 418 1 10 HELIX 3 AA3 PRO A 423 GLN A 444 1 22 HELIX 4 AA4 HIS A 453 GLU A 479 1 27 HELIX 5 AA5 GLU A 479 HIS A 484 1 6 HELIX 6 AA6 MET A 488 GLU A 493 1 6 HELIX 7 AA7 GLN A 494 TYR A 513 1 20 HELIX 8 AA8 PRO A 520 LEU A 526 1 7 HELIX 9 AA9 GLN A 529 TYR A 534 1 6 HELIX 10 AB1 TYR A 534 GLU A 544 1 11 HELIX 11 AB2 SER A 548 SER A 565 1 18 HELIX 12 AB3 LEU A 566 SER A 569 5 4 HELIX 13 AB4 SER A 572 SER A 581 1 10 HELIX 14 AB5 CYS A 588 ILE A 592 5 5 HELIX 15 AB6 GLY A 786 CYS A 807 1 22 HELIX 16 AB7 ARG A 818 CYS A 831 1 14 HELIX 17 AB8 PRO A 832 LYS A 836 5 5 HELIX 18 AB9 HIS A 839 THR A 855 1 17 HELIX 19 AC1 PHE A 861 GLU A 863 5 3 HELIX 20 AC2 ILE A 864 ARG A 869 1 6 HELIX 21 AC3 ASN A 875 SER A 881 1 7 HELIX 22 AC4 ASP A 929 ILE A 937 1 9 HELIX 23 AC5 ILE A 937 LEU A 947 1 11 HELIX 24 AC6 ALA X 12 TRP X 17 1 6 SHEET 1 AA1 2 VAL A 882 LEU A 883 0 SHEET 2 AA1 2 ARG A 927 GLY A 928 -1 O GLY A 928 N VAL A 882 LINK C ALA X 12 N SEP X 13 1555 1555 1.32 LINK C SEP X 13 N ALA X 14 1555 1555 1.32 CISPEP 1 PHE A 519 PRO A 520 0 3.43 CISPEP 2 ASP A 811 VAL A 812 0 -0.49 CISPEP 3 GLU A 857 GLU A 858 0 -17.06 CISPEP 4 GLU A 858 ARG A 859 0 7.02 CISPEP 5 GLU A 925 GLU A 926 0 -0.64 SITE 1 AC1 6 TYR A 442 ARG A 460 ARG A 482 SER A 515 SITE 2 AC1 6 PRO A 516 ARG A 517 SITE 1 AC2 2 GLY A 786 SER A 787 SITE 1 AC3 4 ARG A 396 SER A 548 ARG A 549 HOH A1165 SITE 1 AC4 3 ARG A 804 GLU A 815 ARG A 817 CRYST1 74.815 100.530 142.790 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013366 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009947 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007003 0.00000