HEADER TRANSFERASE 12-MAR-15 4YPD TITLE CRYSTAL STRUCTURE OF DAPK1 CATALYTIC DOMAIN IN COMPLEX WITH THE HINGE TITLE 2 BINDING FRAGMENT 4-METHYLPYRIDAZINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEATH-ASSOCIATED PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN (UNP RESIDUES 2-285); COMPND 5 SYNONYM: DAP KINASE 1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DAPK1, DAPK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.L.GRUM-TOKARS,G.MINASOV,S.M.ROY,W.F.ANDERSON,D.M.WATTERSON REVDAT 4 27-SEP-23 4YPD 1 REMARK REVDAT 3 18-DEC-19 4YPD 1 REMARK REVDAT 2 06-SEP-17 4YPD 1 SOURCE JRNL REMARK REVDAT 1 13-MAY-15 4YPD 0 JRNL AUTH V.L.GRUM-TOKARS,G.MINASOV,S.M.ROY,W.F.ANDERSON,D.M.WATTERSON JRNL TITL CRYSTAL STRUCTURE OF DAPK1 CATALYTIC DOMAIN IN COMPLEX WITH JRNL TITL 2 HINGE BINDING FRAGMENTS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.M.WATTERSON,V.L.GRUM-TOKARS,S.M.ROY,J.P.SCHAVOCKY, REMARK 1 AUTH 2 B.D.BRADARIC,A.D.BACHSTETTER,B.XING,E.DIMAYUGA,F.SAEED, REMARK 1 AUTH 3 H.ZHANG,A.STANISZEWSKI,J.C.PELLETIER,G.MINASOV,W.F.ANDERSON, REMARK 1 AUTH 4 O.ARANCIO,L.J.VAN ELDIK REMARK 1 TITL DEVELOPMENT OF NOVEL IN VIVO CHEMICAL PROBES TO ADDRESS CNS REMARK 1 TITL 2 PROTEIN KINASE INVOLVEMENT IN SYNAPTIC DYSFUNCTION. REMARK 1 REF PLOS ONE V. 8 66226 2013 REMARK 1 REFN ESSN 1932-6203 REMARK 1 PMID 23840427 REMARK 1 DOI 10.1371/JOURNAL.PONE.0066226 REMARK 1 REFERENCE 2 REMARK 1 AUTH L.K.MCNAMARA,J.S.BRUNZELLE,J.P.SCHAVOCKY,D.M.WATTERSON, REMARK 1 AUTH 2 V.GRUM-TOKARS REMARK 1 TITL SITE-DIRECTED MUTAGENESIS OF THE GLYCINE-RICH LOOP OF DEATH REMARK 1 TITL 2 ASSOCIATED PROTEIN KINASE (DAPK) IDENTIFIES IT AS A KEY REMARK 1 TITL 3 STRUCTURE FOR CATALYTIC ACTIVITY. REMARK 1 REF BIOCHIM.BIOPHYS.ACTA V.1813 1068 2011 REMARK 1 REFN ISSN 0006-3002 REMARK 1 PMID 21126544 REMARK 1 DOI 10.1016/J.BBAMCR.2010.11.011 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 48902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2610 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3581 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 178 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2283 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 303 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : -0.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.062 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.903 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2655 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2538 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3620 ; 1.443 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5894 ; 0.773 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 340 ; 4.232 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;33.542 ;25.115 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 497 ;10.558 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.146 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 394 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3089 ; 0.021 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 601 ; 0.017 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1279 ; 1.474 ; 1.634 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1278 ; 1.472 ; 1.632 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1637 ; 2.259 ; 2.446 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 49 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7385 -2.9644 2.5052 REMARK 3 T TENSOR REMARK 3 T11: 0.0631 T22: 0.0172 REMARK 3 T33: 0.0661 T12: 0.0130 REMARK 3 T13: -0.0143 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 2.1552 L22: 1.9079 REMARK 3 L33: 1.8211 L12: 1.2517 REMARK 3 L13: 0.9599 L23: 1.5237 REMARK 3 S TENSOR REMARK 3 S11: 0.0871 S12: -0.0473 S13: -0.1651 REMARK 3 S21: 0.1162 S22: -0.0459 S23: -0.1928 REMARK 3 S31: 0.1682 S32: -0.0537 S33: -0.0412 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): 19.5009 1.7312 4.1178 REMARK 3 T TENSOR REMARK 3 T11: 0.0493 T22: 0.0357 REMARK 3 T33: 0.0332 T12: -0.0017 REMARK 3 T13: 0.0077 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.7571 L22: 0.9355 REMARK 3 L33: 0.8469 L12: -0.2202 REMARK 3 L13: -0.3113 L23: 0.7539 REMARK 3 S TENSOR REMARK 3 S11: 0.0014 S12: -0.0164 S13: -0.0562 REMARK 3 S21: -0.0034 S22: -0.0360 S23: -0.0061 REMARK 3 S31: 0.0981 S32: -0.0232 S33: 0.0346 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 107 A 170 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7489 13.8403 14.2815 REMARK 3 T TENSOR REMARK 3 T11: 0.0070 T22: 0.0405 REMARK 3 T33: 0.0257 T12: 0.0009 REMARK 3 T13: 0.0025 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 1.4628 L22: 1.2107 REMARK 3 L33: 1.0173 L12: 0.0367 REMARK 3 L13: -0.1589 L23: 0.2162 REMARK 3 S TENSOR REMARK 3 S11: 0.0176 S12: -0.0975 S13: 0.0513 REMARK 3 S21: 0.0488 S22: 0.0405 S23: -0.1023 REMARK 3 S31: -0.0174 S32: 0.1379 S33: -0.0581 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 171 A 295 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2600 10.5280 21.1330 REMARK 3 T TENSOR REMARK 3 T11: 0.0038 T22: 0.0027 REMARK 3 T33: 0.0187 T12: -0.0005 REMARK 3 T13: 0.0010 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.4757 L22: 0.9393 REMARK 3 L33: 0.8794 L12: 0.1622 REMARK 3 L13: 0.0322 L23: -0.1286 REMARK 3 S TENSOR REMARK 3 S11: 0.0237 S12: -0.0232 S13: -0.0197 REMARK 3 S21: 0.0203 S22: 0.0157 S23: -0.0153 REMARK 3 S31: 0.0140 S32: -0.0264 S33: -0.0394 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4YPD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207878. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57841 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1JKS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 1.7 M AMMONIUM SULFATE, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.42650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.09650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.25550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.09650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.42650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.25550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 278 REMARK 465 ASP A 279 REMARK 465 THR A 280 REMARK 465 GLN A 281 REMARK 465 GLN A 282 REMARK 465 ALA A 283 REMARK 465 LEU A 284 REMARK 465 SER A 285 REMARK 465 SER A 286 REMARK 465 ALA A 287 REMARK 465 TRP A 288 REMARK 465 SER A 289 REMARK 465 HIS A 290 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 253 O2 SO4 A 302 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 109 124.79 67.47 REMARK 500 GLU A 109 124.16 53.81 REMARK 500 SER A 110 98.97 72.26 REMARK 500 SER A 110 67.19 90.03 REMARK 500 ASP A 139 39.06 -145.31 REMARK 500 ASP A 161 78.60 63.31 REMARK 500 ILE A 168 79.70 -114.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 673 DISTANCE = 6.58 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DKG A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YO4 RELATED DB: PDB DBREF 4YPD A 2 285 UNP P53355 DAPK1_HUMAN 2 285 SEQADV 4YPD SER A 286 UNP P53355 EXPRESSION TAG SEQADV 4YPD ALA A 287 UNP P53355 EXPRESSION TAG SEQADV 4YPD TRP A 288 UNP P53355 EXPRESSION TAG SEQADV 4YPD SER A 289 UNP P53355 EXPRESSION TAG SEQADV 4YPD HIS A 290 UNP P53355 EXPRESSION TAG SEQADV 4YPD PRO A 291 UNP P53355 EXPRESSION TAG SEQADV 4YPD GLN A 292 UNP P53355 EXPRESSION TAG SEQADV 4YPD PHE A 293 UNP P53355 EXPRESSION TAG SEQADV 4YPD GLU A 294 UNP P53355 EXPRESSION TAG SEQADV 4YPD LYS A 295 UNP P53355 EXPRESSION TAG SEQRES 1 A 294 THR VAL PHE ARG GLN GLU ASN VAL ASP ASP TYR TYR ASP SEQRES 2 A 294 THR GLY GLU GLU LEU GLY SER GLY GLN PHE ALA VAL VAL SEQRES 3 A 294 LYS LYS CYS ARG GLU LYS SER THR GLY LEU GLN TYR ALA SEQRES 4 A 294 ALA LYS PHE ILE LYS LYS ARG ARG THR LYS SER SER ARG SEQRES 5 A 294 ARG GLY VAL SER ARG GLU ASP ILE GLU ARG GLU VAL SER SEQRES 6 A 294 ILE LEU LYS GLU ILE GLN HIS PRO ASN VAL ILE THR LEU SEQRES 7 A 294 HIS GLU VAL TYR GLU ASN LYS THR ASP VAL ILE LEU ILE SEQRES 8 A 294 LEU GLU LEU VAL ALA GLY GLY GLU LEU PHE ASP PHE LEU SEQRES 9 A 294 ALA GLU LYS GLU SER LEU THR GLU GLU GLU ALA THR GLU SEQRES 10 A 294 PHE LEU LYS GLN ILE LEU ASN GLY VAL TYR TYR LEU HIS SEQRES 11 A 294 SER LEU GLN ILE ALA HIS PHE ASP LEU LYS PRO GLU ASN SEQRES 12 A 294 ILE MET LEU LEU ASP ARG ASN VAL PRO LYS PRO ARG ILE SEQRES 13 A 294 LYS ILE ILE ASP PHE GLY LEU ALA HIS LYS ILE ASP PHE SEQRES 14 A 294 GLY ASN GLU PHE LYS ASN ILE PHE GLY THR PRO GLU PHE SEQRES 15 A 294 VAL ALA PRO GLU ILE VAL ASN TYR GLU PRO LEU GLY LEU SEQRES 16 A 294 GLU ALA ASP MET TRP SER ILE GLY VAL ILE THR TYR ILE SEQRES 17 A 294 LEU LEU SER GLY ALA SER PRO PHE LEU GLY ASP THR LYS SEQRES 18 A 294 GLN GLU THR LEU ALA ASN VAL SER ALA VAL ASN TYR GLU SEQRES 19 A 294 PHE GLU ASP GLU TYR PHE SER ASN THR SER ALA LEU ALA SEQRES 20 A 294 LYS ASP PHE ILE ARG ARG LEU LEU VAL LYS ASP PRO LYS SEQRES 21 A 294 LYS ARG MET THR ILE GLN ASP SER LEU GLN HIS PRO TRP SEQRES 22 A 294 ILE LYS PRO LYS ASP THR GLN GLN ALA LEU SER SER ALA SEQRES 23 A 294 TRP SER HIS PRO GLN PHE GLU LYS HET CL A 301 2 HET SO4 A 302 5 HET DKG A 303 14 HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM DKG 4-METHYLPYRIDAZINE FORMUL 2 CL CL 1- FORMUL 3 SO4 O4 S 2- FORMUL 4 DKG C5 H6 N2 FORMUL 5 HOH *303(H2 O) HELIX 1 AA1 ASN A 8 ASP A 11 5 4 HELIX 2 AA2 SER A 57 ILE A 71 1 15 HELIX 3 AA3 GLU A 100 GLU A 109 1 10 HELIX 4 AA4 THR A 112 LEU A 133 1 22 HELIX 5 AA5 LYS A 141 GLU A 143 5 3 HELIX 6 AA6 THR A 180 VAL A 184 5 5 HELIX 7 AA7 ALA A 185 ASN A 190 1 6 HELIX 8 AA8 LEU A 196 GLY A 213 1 18 HELIX 9 AA9 THR A 221 ALA A 231 1 11 HELIX 10 AB1 GLU A 237 SER A 242 1 6 HELIX 11 AB2 SER A 245 ARG A 254 1 10 HELIX 12 AB3 ASP A 259 ARG A 263 5 5 HELIX 13 AB4 THR A 265 HIS A 272 1 8 SHEET 1 AA1 5 TYR A 13 SER A 21 0 SHEET 2 AA1 5 ALA A 25 GLU A 32 -1 O VAL A 27 N GLY A 20 SHEET 3 AA1 5 GLN A 38 LYS A 45 -1 O ALA A 41 N LYS A 28 SHEET 4 AA1 5 ASP A 88 GLU A 94 -1 O VAL A 89 N ILE A 44 SHEET 5 AA1 5 LEU A 79 GLU A 84 -1 N TYR A 83 O ILE A 90 SHEET 1 AA2 2 ILE A 135 ALA A 136 0 SHEET 2 AA2 2 HIS A 166 LYS A 167 -1 O HIS A 166 N ALA A 136 SHEET 1 AA3 2 ILE A 145 LEU A 147 0 SHEET 2 AA3 2 ILE A 157 ILE A 159 -1 O LYS A 158 N MET A 146 SITE 1 AC1 7 LYS A 42 ILE A 77 LEU A 93 ASP A 161 SITE 2 AC1 7 DKG A 303 HOH A 568 HOH A 630 SITE 1 AC2 5 LYS A 86 PHE A 236 LYS A 249 ARG A 253 SITE 2 AC2 5 HOH A 443 SITE 1 AC3 8 LEU A 19 ALA A 40 GLU A 94 LEU A 95 SITE 2 AC3 8 VAL A 96 MET A 146 CL A 301 HOH A 669 CRYST1 46.853 62.511 88.193 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021343 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015997 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011339 0.00000