HEADER HYDROLASE 13-MAR-15 4YPV TITLE HIGH-RESOLUTION STRUCTURE OF A METAGENOME-DERIVED ESTERASE EST8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EST8; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARVIBACULUM; SOURCE 3 ORGANISM_TAXID: 256616; SOURCE 4 GENE: EST8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ESTERASE, EST8, METAGENOME, MICROBIAL CONSORTIUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.R.PEREIRA,C.T.MAESTER,E.MACEDO LEMOS,M.HYVONEN,A.BALAN REVDAT 5 27-SEP-23 4YPV 1 REMARK REVDAT 4 01-JAN-20 4YPV 1 REMARK REVDAT 3 17-APR-19 4YPV 1 REMARK REVDAT 2 26-APR-17 4YPV 1 JRNL REVDAT 1 18-MAY-16 4YPV 0 JRNL AUTH M.R.PEREIRA,T.C.MAESTER,G.F.MERCALDI,E.G.DE MACEDO LEMOS, JRNL AUTH 2 M.HYVONEN,A.BALAN JRNL TITL FROM A METAGENOMIC SOURCE TO A HIGH-RESOLUTION STRUCTURE OF JRNL TITL 2 A NOVEL ALKALINE ESTERASE. JRNL REF APPL. MICROBIOL. BIOTECHNOL. 2017 JRNL REFN ESSN 1432-0614 JRNL PMID 28331945 JRNL DOI 10.1007/S00253-017-8226-4 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 35626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.9883 - 4.3450 0.99 2776 129 0.1252 0.1494 REMARK 3 2 4.3450 - 3.4508 0.99 2699 116 0.1309 0.1609 REMARK 3 3 3.4508 - 3.0152 0.99 2599 164 0.1578 0.1992 REMARK 3 4 3.0152 - 2.7397 0.99 2628 135 0.1666 0.2085 REMARK 3 5 2.7397 - 2.5435 0.99 2611 141 0.1692 0.1799 REMARK 3 6 2.5435 - 2.3936 0.98 2587 118 0.1660 0.1882 REMARK 3 7 2.3936 - 2.2738 0.99 2596 153 0.1579 0.1783 REMARK 3 8 2.2738 - 2.1749 0.99 2557 140 0.1540 0.1726 REMARK 3 9 2.1749 - 2.0912 0.99 2573 137 0.1647 0.2100 REMARK 3 10 2.0912 - 2.0190 0.98 2557 151 0.1775 0.2234 REMARK 3 11 2.0190 - 1.9559 0.98 2544 137 0.1847 0.2269 REMARK 3 12 1.9559 - 1.9000 0.98 2535 128 0.1944 0.1992 REMARK 3 13 1.9000 - 1.8500 0.98 2584 131 0.2122 0.2372 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2396 REMARK 3 ANGLE : 0.986 3265 REMARK 3 CHIRALITY : 0.042 363 REMARK 3 PLANARITY : 0.005 436 REMARK 3 DIHEDRAL : 11.992 859 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7101 20.9501 20.2426 REMARK 3 T TENSOR REMARK 3 T11: 0.4583 T22: 0.6237 REMARK 3 T33: 0.6372 T12: 0.0399 REMARK 3 T13: 0.0498 T23: -0.2491 REMARK 3 L TENSOR REMARK 3 L11: 2.8085 L22: 1.7875 REMARK 3 L33: 2.8853 L12: 0.4600 REMARK 3 L13: 1.6156 L23: 1.1274 REMARK 3 S TENSOR REMARK 3 S11: 0.0273 S12: 0.6835 S13: -0.7130 REMARK 3 S21: -0.0391 S22: -0.1016 S23: -0.2541 REMARK 3 S31: 0.4568 S32: 0.3392 S33: -0.0364 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8697 40.3208 22.7377 REMARK 3 T TENSOR REMARK 3 T11: 0.2519 T22: 0.4942 REMARK 3 T33: 0.3595 T12: -0.0181 REMARK 3 T13: 0.0329 T23: 0.0388 REMARK 3 L TENSOR REMARK 3 L11: 2.8583 L22: 2.3366 REMARK 3 L33: 2.4649 L12: -1.2206 REMARK 3 L13: 0.0465 L23: -0.0210 REMARK 3 S TENSOR REMARK 3 S11: 0.2388 S12: 0.7407 S13: 0.0584 REMARK 3 S21: -0.2300 S22: -0.2893 S23: -0.3484 REMARK 3 S31: -0.0734 S32: 0.3538 S33: -0.0323 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4497 43.0557 33.3564 REMARK 3 T TENSOR REMARK 3 T11: 0.1708 T22: 0.2141 REMARK 3 T33: 0.1732 T12: -0.0263 REMARK 3 T13: -0.0100 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 2.5141 L22: 2.7692 REMARK 3 L33: 2.5968 L12: -1.1265 REMARK 3 L13: -0.1459 L23: 0.1069 REMARK 3 S TENSOR REMARK 3 S11: 0.0500 S12: 0.1784 S13: 0.0851 REMARK 3 S21: 0.1757 S22: -0.0315 S23: -0.0804 REMARK 3 S31: -0.1753 S32: -0.0236 S33: 0.0205 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0798 25.0309 34.6773 REMARK 3 T TENSOR REMARK 3 T11: 0.3408 T22: 0.2493 REMARK 3 T33: 0.4230 T12: -0.0375 REMARK 3 T13: 0.0523 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 2.3732 L22: 3.0898 REMARK 3 L33: 2.7199 L12: -0.8685 REMARK 3 L13: -0.3089 L23: 0.4505 REMARK 3 S TENSOR REMARK 3 S11: -0.1724 S12: 0.1605 S13: -0.8417 REMARK 3 S21: 0.4265 S22: -0.0476 S23: 0.3081 REMARK 3 S31: 0.6419 S32: -0.1168 S33: 0.1331 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 210 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4960 26.3301 42.3257 REMARK 3 T TENSOR REMARK 3 T11: 0.5045 T22: 0.2912 REMARK 3 T33: 0.3739 T12: 0.0817 REMARK 3 T13: -0.0425 T23: 0.0447 REMARK 3 L TENSOR REMARK 3 L11: 4.2062 L22: 2.8422 REMARK 3 L33: 3.0599 L12: -2.1937 REMARK 3 L13: -1.8439 L23: 0.4825 REMARK 3 S TENSOR REMARK 3 S11: -0.4193 S12: -0.5167 S13: -0.6511 REMARK 3 S21: 0.9529 S22: 0.2245 S23: -0.0107 REMARK 3 S31: 0.6775 S32: 0.4757 S33: 0.0682 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 233 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1894 27.8302 29.3816 REMARK 3 T TENSOR REMARK 3 T11: 0.2819 T22: 0.3967 REMARK 3 T33: 0.4950 T12: -0.1174 REMARK 3 T13: 0.0395 T23: -0.1406 REMARK 3 L TENSOR REMARK 3 L11: 2.1135 L22: 1.9398 REMARK 3 L33: 1.6811 L12: -0.7002 REMARK 3 L13: -0.2505 L23: 0.3166 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: 0.4871 S13: -0.7623 REMARK 3 S21: 0.0402 S22: -0.1314 S23: 0.5411 REMARK 3 S31: 0.4138 S32: -0.4597 S33: 0.1273 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207905. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35630 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 27.985 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.470 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.53 REMARK 200 R MERGE FOR SHELL (I) : 0.57100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1EVQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1% PEG 8000, 1.4 M TRIAMMONIUM REMARK 280 CITRATE, PH 9.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.88833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.77667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.77667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.88833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -36 REMARK 465 GLY A -35 REMARK 465 SER A -34 REMARK 465 SER A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 SER A -26 REMARK 465 SER A -25 REMARK 465 GLY A -24 REMARK 465 LEU A -23 REMARK 465 VAL A -22 REMARK 465 PRO A -21 REMARK 465 ARG A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 MET A -16 REMARK 465 ALA A -15 REMARK 465 SER A -14 REMARK 465 MET A -13 REMARK 465 THR A -12 REMARK 465 GLY A -11 REMARK 465 GLY A -10 REMARK 465 GLN A -9 REMARK 465 GLN A -8 REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 ARG A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 GLU A -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A -1 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 0 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 297 O HOH A 401 1.85 REMARK 500 OD1 ASP A 297 O HOH A 402 1.91 REMARK 500 NH1 ARG A 260 O HOH A 403 1.93 REMARK 500 O ALA A 19 O HOH A 404 1.94 REMARK 500 O HOH A 566 O HOH A 576 1.99 REMARK 500 O HOH A 441 O HOH A 457 2.07 REMARK 500 O HOH A 482 O HOH A 577 2.10 REMARK 500 N GLY A 74 O HOH A 405 2.10 REMARK 500 OXT ALA A 311 O HOH A 406 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 93 -161.27 -165.12 REMARK 500 PHE A 125 136.38 -39.98 REMARK 500 SER A 159 -123.19 63.29 REMARK 500 TYR A 187 65.59 25.84 REMARK 500 PHE A 207 -67.96 76.16 REMARK 500 ASN A 222 54.69 -98.19 REMARK 500 REMARK 500 REMARK: NULL DBREF 4YPV A -36 311 PDB 4YPV 4YPV -36 311 SEQRES 1 A 348 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 348 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 348 GLY GLN GLN MET GLY ARG GLY SER GLU PHE THR MET ALA SEQRES 4 A 348 LEU ASP PRO GLN ALA LYS GLY LEU LEU ASP ALA MET ALA SEQRES 5 A 348 ALA ASN PRO ALA PRO ARG ILE ILE ASP LEU PRO VAL LYS SEQRES 6 A 348 GLU ALA ARG GLU MET TYR ARG GLY ILE ALA ALA GLN LEU SEQRES 7 A 348 ASP LEU GLN ASP LEU PRO ILE GLY LYS THR GLU ASP ARG SEQRES 8 A 348 LYS ILE PRO GLY PRO ALA GLY ASP ILE PRO VAL ARG ILE SEQRES 9 A 348 TYR THR PRO VAL ALA ALA GLY GLY ALA ALA LEU PRO VAL SEQRES 10 A 348 LEU VAL TYR PHE HIS GLY GLY GLY TRP VAL ILE GLY ASP SEQRES 11 A 348 LEU GLU THR HIS ASP ALA LEU CYS ARG SER PHE ALA ASN SEQRES 12 A 348 GLU ALA GLY CYS LYS VAL VAL ALA VAL ASP TYR ARG LEU SEQRES 13 A 348 ALA PRO GLU HIS ARG PHE PRO ALA ALA ALA GLU ASP CYS SEQRES 14 A 348 LEU ALA ALA VAL LYS TRP VAL GLU THR ASN ALA SER GLU SEQRES 15 A 348 ILE GLY VAL ASP ALA ASN ARG ILE ALA VAL ALA GLY ASP SEQRES 16 A 348 SER ALA GLY GLY ASN LEU ALA ALA VAL VAL SER GLN LEU SEQRES 17 A 348 ALA LEU ALA ALA LYS GLY PRO ARG ILE ALA PHE GLN LEU SEQRES 18 A 348 LEU ILE TYR PRO VAL THR ASP THR ASN VAL ASP THR ALA SEQRES 19 A 348 SER TYR ARG GLU ASN ALA SER GLY TYR PHE LEU GLU ARG SEQRES 20 A 348 ASP GLY MET ILE TRP PHE PHE ASP HIS TYR LEU ASN GLY SEQRES 21 A 348 ALA ASP ARG THR ASP PRO ARG VAL ALA PRO LEU ARG ALA SEQRES 22 A 348 ALA SER LEU ALA GLY LEU PRO ARG ALA TYR VAL ILE THR SEQRES 23 A 348 ALA GLY PHE ASP PRO LEU LYS ASP GLU GLY ARG ALA TYR SEQRES 24 A 348 ALA GLU ALA LEU LYS ALA ALA GLY VAL PRO THR GLU TYR SEQRES 25 A 348 VAL ASN TYR GLU GLY MET ILE HIS GLY PHE PHE ASN LEU SEQRES 26 A 348 GLN ALA ALA PHE ASP VAL SER ARG ASP ALA VAL LYS ALA SEQRES 27 A 348 ALA ALA LYS ALA LEU LYS GLU ALA LEU ALA FORMUL 2 HOH *197(H2 O) HELIX 1 AA1 ASP A 4 ALA A 16 1 13 HELIX 2 AA2 ARG A 21 LEU A 25 5 5 HELIX 3 AA3 PRO A 26 ASP A 42 1 17 HELIX 4 AA4 HIS A 97 GLY A 109 1 13 HELIX 5 AA5 PRO A 126 ASN A 142 1 17 HELIX 6 AA6 ASN A 142 GLY A 147 1 6 HELIX 7 AA7 SER A 159 LYS A 176 1 18 HELIX 8 AA8 THR A 196 ASN A 202 1 7 HELIX 9 AA9 GLU A 209 LEU A 221 1 13 HELIX 10 AB1 ALA A 232 ALA A 236 5 5 HELIX 11 AB2 LEU A 255 ALA A 269 1 15 HELIX 12 AB3 GLY A 284 LEU A 288 5 5 HELIX 13 AB4 PHE A 292 LEU A 310 1 19 SHEET 1 AA1 8 LYS A 50 ILE A 56 0 SHEET 2 AA1 8 ILE A 63 THR A 69 -1 O VAL A 65 N ARG A 54 SHEET 3 AA1 8 LYS A 111 VAL A 115 -1 O ALA A 114 N ARG A 66 SHEET 4 AA1 8 LEU A 78 PHE A 84 1 N LEU A 81 O VAL A 113 SHEET 5 AA1 8 VAL A 148 ASP A 158 1 O ALA A 154 N VAL A 82 SHEET 6 AA1 8 PHE A 182 ILE A 186 1 O LEU A 184 N VAL A 155 SHEET 7 AA1 8 ALA A 245 ALA A 250 1 O TYR A 246 N LEU A 185 SHEET 8 AA1 8 THR A 273 TYR A 278 1 O GLU A 274 N VAL A 247 CISPEP 1 ALA A 120 PRO A 121 0 -0.79 CISPEP 2 PHE A 125 PRO A 126 0 3.85 CISPEP 3 GLY A 177 PRO A 178 0 -0.80 CRYST1 85.496 85.496 98.665 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011696 0.006753 0.000000 0.00000 SCALE2 0.000000 0.013506 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010135 0.00000