HEADER TRANSFERASE/TRANSFERASE INHIBITOR 13-MAR-15 4YPX TITLE CRYSTAL STRUCTURE OF TRMD, A M1G37 TRNA METHYLTRANSFERASE WITH SAM- TITLE 2 COMPETITIVE COMPOUNDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE (STRAIN ATCC 51907 / DSM SOURCE 3 11121 / KW20 / RD); SOURCE 4 ORGANISM_TAXID: 71421; SOURCE 5 STRAIN: ATCC 51907 / DSM 11121 / KW20 / RD; SOURCE 6 GENE: TRMD, HI_0202; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21*(DE3)PGRO7; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TRMD, HAEMOPHILUS INFLUENZAE, SAM-BINDING, KNOT, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.A.ELKINS,W.G.BONNETTE,J.A.STUCKEY REVDAT 2 27-SEP-23 4YPX 1 JRNL REMARK REVDAT 1 16-MAR-16 4YPX 0 JRNL AUTH P.A.ELKINS,W.G.BONNETTE,J.A.STUCKEY JRNL TITL CRYSTAL STRUCTURE OF TRMD, A M1G37 TRNA METHYLTRANSFERASE JRNL TITL 2 WITH SAM-COMPETITIVE COMPOUNDS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 24731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.440 REMARK 3 FREE R VALUE TEST SET COUNT : 1592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2145 - 4.1997 0.99 2200 151 0.1633 0.1704 REMARK 3 2 4.1997 - 3.3350 1.00 2137 147 0.1486 0.1677 REMARK 3 3 3.3350 - 2.9138 1.00 2120 147 0.1783 0.2053 REMARK 3 4 2.9138 - 2.6476 1.00 2109 144 0.1786 0.2104 REMARK 3 5 2.6476 - 2.4579 1.00 2092 144 0.1681 0.2088 REMARK 3 6 2.4579 - 2.3131 1.00 2095 144 0.1768 0.2313 REMARK 3 7 2.3131 - 2.1973 1.00 2083 144 0.1642 0.2153 REMARK 3 8 2.1973 - 2.1017 1.00 2080 142 0.1625 0.2186 REMARK 3 9 2.1017 - 2.0208 1.00 2083 145 0.1691 0.2458 REMARK 3 10 2.0208 - 1.9511 1.00 2060 141 0.1763 0.2118 REMARK 3 11 1.9511 - 1.8901 0.99 2080 143 0.1973 0.2418 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1952 REMARK 3 ANGLE : 0.978 2643 REMARK 3 CHIRALITY : 0.042 289 REMARK 3 PLANARITY : 0.005 350 REMARK 3 DIHEDRAL : 12.381 751 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID -3:12) REMARK 3 ORIGIN FOR THE GROUP (A): -26.0305 24.9426 -7.5493 REMARK 3 T TENSOR REMARK 3 T11: 0.2342 T22: 0.2063 REMARK 3 T33: 0.1902 T12: -0.0987 REMARK 3 T13: 0.0322 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 6.1856 L22: 4.1025 REMARK 3 L33: 4.3724 L12: 1.0908 REMARK 3 L13: -2.0785 L23: -1.3122 REMARK 3 S TENSOR REMARK 3 S11: -0.0660 S12: -0.1584 S13: -0.3867 REMARK 3 S21: 0.1961 S22: 0.0707 S23: 0.4947 REMARK 3 S31: 0.4902 S32: -0.5610 S33: -0.0041 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 13:161) REMARK 3 ORIGIN FOR THE GROUP (A): -24.1496 32.0789 -11.3873 REMARK 3 T TENSOR REMARK 3 T11: 0.1058 T22: 0.1488 REMARK 3 T33: 0.1461 T12: -0.0253 REMARK 3 T13: -0.0336 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.7975 L22: 1.5900 REMARK 3 L33: 3.9409 L12: -0.5715 REMARK 3 L13: -0.6563 L23: 0.5142 REMARK 3 S TENSOR REMARK 3 S11: 0.0119 S12: 0.0389 S13: -0.0237 REMARK 3 S21: -0.1247 S22: -0.0195 S23: 0.1442 REMARK 3 S31: -0.0574 S32: -0.3187 S33: -0.0029 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 172:192) REMARK 3 ORIGIN FOR THE GROUP (A): -28.7631 39.8750 24.7221 REMARK 3 T TENSOR REMARK 3 T11: 0.1531 T22: 0.2202 REMARK 3 T33: 0.1766 T12: 0.0662 REMARK 3 T13: 0.0337 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 3.8657 L22: 9.5886 REMARK 3 L33: 4.9359 L12: -4.3165 REMARK 3 L13: 0.6983 L23: -5.5707 REMARK 3 S TENSOR REMARK 3 S11: 0.0093 S12: -0.4794 S13: -0.1665 REMARK 3 S21: 0.0576 S22: 0.4020 S23: 0.3766 REMARK 3 S31: -0.1426 S32: -0.5472 S33: -0.4092 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 193:227) REMARK 3 ORIGIN FOR THE GROUP (A): -37.3134 46.0542 20.4488 REMARK 3 T TENSOR REMARK 3 T11: 0.1334 T22: 0.2152 REMARK 3 T33: 0.1993 T12: 0.0579 REMARK 3 T13: 0.0109 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 5.6203 L22: 8.2387 REMARK 3 L33: 8.5913 L12: 0.2138 REMARK 3 L13: -1.4513 L23: -5.3303 REMARK 3 S TENSOR REMARK 3 S11: -0.1010 S12: -0.2623 S13: -0.1672 REMARK 3 S21: 0.1176 S22: 0.2502 S23: 0.4806 REMARK 3 S31: 0.1138 S32: -0.2001 S33: -0.1508 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 228:245) REMARK 3 ORIGIN FOR THE GROUP (A): -43.1071 53.7292 19.9835 REMARK 3 T TENSOR REMARK 3 T11: 0.2366 T22: 0.3491 REMARK 3 T33: 0.3357 T12: 0.0997 REMARK 3 T13: -0.0188 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 4.2848 L22: 2.0032 REMARK 3 L33: 9.5178 L12: 3.4368 REMARK 3 L13: 3.2198 L23: 4.3930 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: -0.5360 S13: 0.4322 REMARK 3 S21: 0.1052 S22: 0.0713 S23: 0.3937 REMARK 3 S31: -0.4775 S32: -0.4246 S33: -0.0138 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YPX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207764. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : UNKNOWN REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31084 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.69500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1P9P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION:( 12/MG/ML IN 100MM REMARK 280 HEPES PH 7.5, 150MM NACL, 10MM MGCL2 2MM DTT) WELL SOLUTION: (20% REMARK 280 PEG3,350 AND 0.2M POTASSIUM CITRATE TRIBASIC MONOHYDRATE). 4UL REMARK 280 OF S-ADENOSYL METHIONINE IN WATER WERE ADDED TO 100UL OF PROTEIN REMARK 280 AND ALLOWED TO INCUBATE ON ICE FOR 1 HOUR BEFORE PROTEIN WAS REMARK 280 MIXED WITH WELL AT 1:1 RATIO.SEEDING USED TO IMPROVE CRYSTALS. REMARK 280 COMPOUND STOCK SOLUTIONS (EITHER 100MM OR 1M STOCKS) WERE ADDED REMARK 280 UP TO A FINAL DROP CONCENTRATION OF 4.8% DMSO. CRYSTALS WERE REMARK 280 SOAKED FOR 4-6 HOURS. 20% GLYCEROL IN WELL SOLUTION WAS USED AS REMARK 280 CRYOPROTECTANT FOR A QUICK DIP OF CRYSTAL IN LIQUID N2., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 47.23000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.26825 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 59.41033 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 47.23000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 27.26825 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 59.41033 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 47.23000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 27.26825 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 59.41033 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 47.23000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 27.26825 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 59.41033 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 47.23000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 27.26825 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 59.41033 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 47.23000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 27.26825 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 59.41033 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.53651 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 118.82067 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 54.53651 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 118.82067 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 54.53651 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 118.82067 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 54.53651 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 118.82067 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 54.53651 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 118.82067 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 54.53651 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 118.82067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 539 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 549 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 562 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 LYS A 162 REMARK 465 GLN A 163 REMARK 465 ALA A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLU A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 PHE A 171 REMARK 465 SER A 246 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 45 CE NZ REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 HIS A 200 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 225 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A -1 42.01 -89.91 REMARK 500 TYR A 115 -139.61 56.39 REMARK 500 ASP A 173 32.60 -92.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4FG A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YPW RELATED DB: PDB REMARK 900 RELATED ID: 4YPZ RELATED DB: PDB REMARK 900 RELATED ID: 4YQ0 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ2 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ3 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ4 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ5 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ6 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ7 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ8 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ9 RELATED DB: PDB REMARK 900 RELATED ID: 4YQA RELATED DB: PDB REMARK 900 RELATED ID: 4YQB RELATED DB: PDB REMARK 900 RELATED ID: 4YQC RELATED DB: PDB REMARK 900 RELATED ID: 4YQD RELATED DB: PDB REMARK 900 RELATED ID: 4YQG RELATED DB: PDB REMARK 900 RELATED ID: 4YQI RELATED DB: PDB REMARK 900 RELATED ID: 4YQJ RELATED DB: PDB REMARK 900 RELATED ID: 4YQK RELATED DB: PDB REMARK 900 RELATED ID: 4YQL RELATED DB: PDB REMARK 900 RELATED ID: 4YQN RELATED DB: PDB REMARK 900 RELATED ID: 4YQO RELATED DB: PDB REMARK 900 RELATED ID: 4YQP RELATED DB: PDB REMARK 900 RELATED ID: 4YQQ RELATED DB: PDB REMARK 900 RELATED ID: 4YQR RELATED DB: PDB REMARK 900 RELATED ID: 4YQS RELATED DB: PDB REMARK 900 RELATED ID: 4YQT RELATED DB: PDB REMARK 900 RELATED ID: 4YPY RELATED DB: PDB REMARK 900 RELATED ID: 4YQ1 RELATED DB: PDB DBREF 4YPX A 1 246 UNP P43912 TRMD_HAEIN 1 246 SEQADV 4YPX GLY A -7 UNP P43912 EXPRESSION TAG SEQADV 4YPX LEU A -6 UNP P43912 EXPRESSION TAG SEQADV 4YPX VAL A -5 UNP P43912 EXPRESSION TAG SEQADV 4YPX PRO A -4 UNP P43912 EXPRESSION TAG SEQADV 4YPX ARG A -3 UNP P43912 EXPRESSION TAG SEQADV 4YPX GLY A -2 UNP P43912 EXPRESSION TAG SEQADV 4YPX SER A -1 UNP P43912 EXPRESSION TAG SEQADV 4YPX HIS A 0 UNP P43912 EXPRESSION TAG SEQRES 1 A 254 GLY LEU VAL PRO ARG GLY SER HIS MET TRP ILE GLY VAL SEQRES 2 A 254 ILE SER LEU PHE PRO GLU MET PHE LYS ALA ILE THR GLU SEQRES 3 A 254 PHE GLY VAL THR GLY ARG ALA VAL LYS HIS ASN LEU LEU SEQRES 4 A 254 LYS VAL GLU CYS TRP ASN PRO ARG ASP PHE THR PHE ASP SEQRES 5 A 254 LYS HIS LYS THR VAL ASP ASP ARG PRO TYR GLY GLY GLY SEQRES 6 A 254 PRO GLY MET LEU MET MET VAL GLN PRO LEU ARG ASP ALA SEQRES 7 A 254 ILE HIS THR ALA LYS ALA ALA ALA GLY GLU GLY ALA LYS SEQRES 8 A 254 VAL ILE TYR LEU SER PRO GLN GLY ARG LYS LEU ASP GLN SEQRES 9 A 254 GLY GLY VAL THR GLU LEU ALA GLN ASN GLN LYS LEU ILE SEQRES 10 A 254 LEU VAL CYS GLY ARG TYR GLU GLY ILE ASP GLU ARG LEU SEQRES 11 A 254 ILE GLN THR GLU ILE ASP GLU GLU TRP SER ILE GLY ASP SEQRES 12 A 254 TYR VAL LEU THR GLY GLY GLU LEU PRO ALA MET THR LEU SEQRES 13 A 254 ILE ASP ALA VAL ALA ARG PHE ILE PRO GLY VAL LEU GLY SEQRES 14 A 254 LYS GLN ALA SER ALA GLU GLU ASP SER PHE ALA ASP GLY SEQRES 15 A 254 LEU LEU ASP CYS PRO HIS TYR THR ARG PRO GLU VAL LEU SEQRES 16 A 254 GLU GLY LEU THR VAL PRO PRO VAL LEU MET SER GLY HIS SEQRES 17 A 254 HIS GLU GLU ILE ARG LYS TRP ARG LEU LYS GLN SER LEU SEQRES 18 A 254 GLN ARG THR TRP LEU ARG ARG PRO GLU LEU LEU GLU GLY SEQRES 19 A 254 LEU ALA LEU THR ASP GLU GLN ARG LYS LEU LEU LYS GLU SEQRES 20 A 254 ALA GLN ALA GLU HIS ASN SER HET 4FG A 301 10 HETNAM 4FG 6-AMINOPYRIDINE-3-CARBOXAMIDE FORMUL 2 4FG C6 H7 N3 O FORMUL 3 HOH *168(H2 O) HELIX 1 AA1 PHE A 9 MET A 12 5 4 HELIX 2 AA2 PHE A 13 GLU A 18 1 6 HELIX 3 AA3 PHE A 19 HIS A 28 1 10 HELIX 4 AA4 ASN A 37 THR A 42 5 6 HELIX 5 AA5 MET A 63 GLY A 79 1 17 HELIX 6 AA6 ASP A 95 ALA A 103 1 9 HELIX 7 AA7 ASP A 119 ILE A 127 1 9 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 193 SER A 198 5 6 HELIX 10 AB1 HIS A 200 ARG A 220 1 21 HELIX 11 AB2 ARG A 220 GLU A 225 1 6 HELIX 12 AB3 THR A 230 ASN A 245 1 16 SHEET 1 AA1 6 LEU A 31 TRP A 36 0 SHEET 2 AA1 6 MET A 1 ILE A 6 1 N ILE A 3 O LYS A 32 SHEET 3 AA1 6 LYS A 107 VAL A 111 1 O LEU A 108 N GLY A 4 SHEET 4 AA1 6 LYS A 83 LEU A 87 1 N ILE A 85 O ILE A 109 SHEET 5 AA1 6 GLU A 129 SER A 132 1 O GLU A 129 N TYR A 86 SHEET 6 AA1 6 ARG A 92 LYS A 93 1 N ARG A 92 O SER A 132 SHEET 1 AA2 2 ASP A 50 ASP A 51 0 SHEET 2 AA2 2 LEU A 61 MET A 62 -1 O LEU A 61 N ASP A 51 SHEET 1 AA3 2 VAL A 186 LEU A 187 0 SHEET 2 AA3 2 LEU A 190 THR A 191 -1 O LEU A 190 N LEU A 187 CISPEP 1 ARG A 183 PRO A 184 0 3.26 SITE 1 AC1 11 LEU A 87 SER A 88 PRO A 89 SER A 132 SITE 2 AC1 11 ILE A 133 GLY A 134 TYR A 136 LEU A 138 SITE 3 AC1 11 GLY A 140 PRO A 144 HOH A 492 CRYST1 94.460 94.460 178.231 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010586 0.006112 0.000000 0.00000 SCALE2 0.000000 0.012224 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005611 0.00000