HEADER TRANSFERASE/TRANSFERASE INHIBITOR 13-MAR-15 4YPZ TITLE CRYSTAL STRUCTURE OF TRMD, A M1G37 TRNA METHYLTRANSFERASE WITH SAM- TITLE 2 COMPETITIVE COMPOUNDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE (STRAIN ATCC 51907 / DSM SOURCE 3 11121 / KW20 / RD); SOURCE 4 ORGANISM_TAXID: 71421; SOURCE 5 STRAIN: ATCC 51907 / DSM 11121 / KW20 / RD; SOURCE 6 GENE: TRMD, HI_0202; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_COMMON: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21*(DE3)PGRO7; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TRMD, HAEMOPHILUS INFLUENZAE, DIMERIZATION, SAM-BINDING, KNOT, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.A.ELKINS,W.G.BONNETTE,J.A.STUCKEY REVDAT 2 27-SEP-23 4YPZ 1 JRNL REMARK REVDAT 1 16-MAR-16 4YPZ 0 JRNL AUTH P.A.ELKINS,W.G.BONNETTE,J.A.STUCKEY JRNL TITL CRYSTAL STRUCTURE OF TRMD, A M1G37 TRNA METHYLTRANSFERASE JRNL TITL 2 WITH SAM-COMPETITIVE COMPOUNDS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1609 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.0872 - 4.0891 0.99 2364 153 0.1570 0.1649 REMARK 3 2 4.0891 - 3.2469 1.00 2299 148 0.1546 0.1771 REMARK 3 3 3.2469 - 2.8368 1.00 2294 147 0.1800 0.1935 REMARK 3 4 2.8368 - 2.5776 1.00 2272 147 0.1836 0.2085 REMARK 3 5 2.5776 - 2.3929 1.00 2265 146 0.1763 0.2238 REMARK 3 6 2.3929 - 2.2519 1.00 2245 144 0.1782 0.2351 REMARK 3 7 2.2519 - 2.1391 1.00 2252 146 0.1636 0.2007 REMARK 3 8 2.1391 - 2.0460 1.00 2252 145 0.1669 0.2208 REMARK 3 9 2.0460 - 1.9673 1.00 2249 145 0.1697 0.1989 REMARK 3 10 1.9673 - 1.8994 1.00 2249 145 0.1713 0.2287 REMARK 3 11 1.8994 - 1.8400 1.00 2222 143 0.1915 0.2572 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1950 REMARK 3 ANGLE : 1.003 2654 REMARK 3 CHIRALITY : 0.043 297 REMARK 3 PLANARITY : 0.004 353 REMARK 3 DIHEDRAL : 13.128 757 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID -1:34) REMARK 3 ORIGIN FOR THE GROUP (A): -25.2983 22.8406 -2.9654 REMARK 3 T TENSOR REMARK 3 T11: 0.1715 T22: 0.1442 REMARK 3 T33: 0.2003 T12: -0.0263 REMARK 3 T13: 0.0213 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 3.8510 L22: 2.8351 REMARK 3 L33: 7.1143 L12: 1.4061 REMARK 3 L13: -1.3955 L23: -1.9079 REMARK 3 S TENSOR REMARK 3 S11: -0.1216 S12: 0.0410 S13: -0.3933 REMARK 3 S21: 0.0020 S22: 0.0852 S23: 0.1921 REMARK 3 S31: 0.5155 S32: -0.5520 S33: 0.0446 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 35:132) REMARK 3 ORIGIN FOR THE GROUP (A): -23.4462 33.9130 -16.8778 REMARK 3 T TENSOR REMARK 3 T11: 0.1786 T22: 0.1599 REMARK 3 T33: 0.1567 T12: -0.0054 REMARK 3 T13: -0.0464 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 2.3008 L22: 2.4158 REMARK 3 L33: 4.6771 L12: -1.4113 REMARK 3 L13: -2.0417 L23: 1.1041 REMARK 3 S TENSOR REMARK 3 S11: 0.0788 S12: 0.0470 S13: 0.0770 REMARK 3 S21: -0.2122 S22: -0.0093 S23: 0.0994 REMARK 3 S31: -0.3065 S32: -0.2474 S33: -0.0650 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 133:160) REMARK 3 ORIGIN FOR THE GROUP (A): -26.3277 34.0479 -1.4654 REMARK 3 T TENSOR REMARK 3 T11: 0.1619 T22: 0.1821 REMARK 3 T33: 0.1398 T12: 0.0294 REMARK 3 T13: -0.0154 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 5.1761 L22: 4.3406 REMARK 3 L33: 3.9906 L12: 1.1743 REMARK 3 L13: -0.5220 L23: -0.1124 REMARK 3 S TENSOR REMARK 3 S11: 0.0603 S12: 0.0086 S13: 0.0195 REMARK 3 S21: 0.1936 S22: -0.0726 S23: 0.2837 REMARK 3 S31: -0.2006 S32: -0.2739 S33: -0.0128 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 173:209) REMARK 3 ORIGIN FOR THE GROUP (A): -33.2199 39.7688 26.9014 REMARK 3 T TENSOR REMARK 3 T11: 0.2677 T22: 0.3469 REMARK 3 T33: 0.2650 T12: 0.0732 REMARK 3 T13: 0.0405 T23: 0.0442 REMARK 3 L TENSOR REMARK 3 L11: 6.0964 L22: 4.6568 REMARK 3 L33: 2.5937 L12: -3.8700 REMARK 3 L13: 2.1453 L23: -2.1304 REMARK 3 S TENSOR REMARK 3 S11: -0.1947 S12: -0.7219 S13: -0.2938 REMARK 3 S21: 0.2493 S22: 0.4539 S23: 0.6048 REMARK 3 S31: -0.1445 S32: -0.5651 S33: -0.2246 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 210:246) REMARK 3 ORIGIN FOR THE GROUP (A): -38.4183 52.2559 17.1979 REMARK 3 T TENSOR REMARK 3 T11: 0.1839 T22: 0.2552 REMARK 3 T33: 0.2600 T12: 0.0758 REMARK 3 T13: -0.0483 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 5.2358 L22: 5.3912 REMARK 3 L33: 8.1948 L12: 2.4157 REMARK 3 L13: -3.3347 L23: -1.0464 REMARK 3 S TENSOR REMARK 3 S11: -0.1095 S12: -0.3653 S13: 0.4005 REMARK 3 S21: 0.0205 S22: 0.0491 S23: 0.2714 REMARK 3 S31: -0.3793 S32: -0.0688 S33: 0.0540 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YPZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207766. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : UNKNOWN REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33022 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.56900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1P9P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION:( 12/MG/ML IN 100MM REMARK 280 HEPES PH 7.5, 150MM NACL, 10MM MGCL2 2MM DTT) WELL SOLUTION: (20% REMARK 280 PEG3,350 AND 0.2M POTASSIUM CITRATE TRIBASIC MONOHYDRATE). 4UL REMARK 280 OF S-ADENOSYL METHIONINE IN WATER WERE ADDED TO 100UL OF PROTEIN REMARK 280 AND ALLOWED TO INCUBATE ON ICE FOR 1 HOUR BEFORE PROTEIN WAS REMARK 280 MIXED WITH WELL AT 1:1 RATIO.SEEDING USED TO IMPROVE CRYSTALS. REMARK 280 COMPOUND STOCK SOLUTIONS (EITHER 100MM OR 1M STOCKS) WERE ADDED REMARK 280 UP TO A FINAL DROP CONCENTRATION OF 4.8% DMSO. CRYSTALS WERE REMARK 280 SOAKED FOR 4-6 HOURS. 20% GLYCEROL IN WELL SOLUTION WAS USED AS REMARK 280 CRYOPROTECTANT FOR A QUICK DIP OF CRYSTAL IN LIQUID N2., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 46.88650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.06993 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 59.72067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 46.88650 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 27.06993 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 59.72067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 46.88650 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 27.06993 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 59.72067 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 46.88650 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 27.06993 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 59.72067 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 46.88650 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 27.06993 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 59.72067 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 46.88650 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 27.06993 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 59.72067 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.13987 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 119.44133 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 54.13987 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 119.44133 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 54.13987 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 119.44133 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 54.13987 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 119.44133 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 54.13987 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 119.44133 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 54.13987 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 119.44133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 497 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 529 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 535 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 GLY A 161 REMARK 465 LYS A 162 REMARK 465 GLN A 163 REMARK 465 ALA A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLU A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 PHE A 171 REMARK 465 ALA A 172 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -1 OG REMARK 470 GLU A 11 CD OE1 OE2 REMARK 470 LYS A 45 CE NZ REMARK 470 ARG A 52 NE CZ NH1 NH2 REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 HIS A 200 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 LYS A 206 CE NZ REMARK 470 GLU A 225 CD OE1 OE2 REMARK 470 LYS A 235 CE NZ REMARK 470 LYS A 238 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 115 -139.95 57.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4FL A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YPW RELATED DB: PDB REMARK 900 RELATED ID: 4YPX RELATED DB: PDB REMARK 900 RELATED ID: 4YQ0 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ2 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ3 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ4 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ5 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ6 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ7 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ8 RELATED DB: PDB REMARK 900 RELATED ID: 4YQ9 RELATED DB: PDB REMARK 900 RELATED ID: 4YQA RELATED DB: PDB REMARK 900 RELATED ID: 4YQB RELATED DB: PDB REMARK 900 RELATED ID: 4YQC RELATED DB: PDB REMARK 900 RELATED ID: 4YQD RELATED DB: PDB REMARK 900 RELATED ID: 4YQG RELATED DB: PDB REMARK 900 RELATED ID: 4YQI RELATED DB: PDB REMARK 900 RELATED ID: 4YQJ RELATED DB: PDB REMARK 900 RELATED ID: 4YQK RELATED DB: PDB REMARK 900 RELATED ID: 4YQL RELATED DB: PDB REMARK 900 RELATED ID: 4YQN RELATED DB: PDB REMARK 900 RELATED ID: 4YQO RELATED DB: PDB REMARK 900 RELATED ID: 4YQP RELATED DB: PDB REMARK 900 RELATED ID: 4YQQ RELATED DB: PDB REMARK 900 RELATED ID: 4YQR RELATED DB: PDB REMARK 900 RELATED ID: 4YQS RELATED DB: PDB REMARK 900 RELATED ID: 4YQT RELATED DB: PDB REMARK 900 RELATED ID: 4YPY RELATED DB: PDB REMARK 900 RELATED ID: 4YQ1 RELATED DB: PDB DBREF 4YPZ A 1 246 UNP P43912 TRMD_HAEIN 1 246 SEQADV 4YPZ GLY A -7 UNP P43912 EXPRESSION TAG SEQADV 4YPZ LEU A -6 UNP P43912 EXPRESSION TAG SEQADV 4YPZ VAL A -5 UNP P43912 EXPRESSION TAG SEQADV 4YPZ PRO A -4 UNP P43912 EXPRESSION TAG SEQADV 4YPZ ARG A -3 UNP P43912 EXPRESSION TAG SEQADV 4YPZ GLY A -2 UNP P43912 EXPRESSION TAG SEQADV 4YPZ SER A -1 UNP P43912 EXPRESSION TAG SEQADV 4YPZ HIS A 0 UNP P43912 EXPRESSION TAG SEQRES 1 A 254 GLY LEU VAL PRO ARG GLY SER HIS MET TRP ILE GLY VAL SEQRES 2 A 254 ILE SER LEU PHE PRO GLU MET PHE LYS ALA ILE THR GLU SEQRES 3 A 254 PHE GLY VAL THR GLY ARG ALA VAL LYS HIS ASN LEU LEU SEQRES 4 A 254 LYS VAL GLU CYS TRP ASN PRO ARG ASP PHE THR PHE ASP SEQRES 5 A 254 LYS HIS LYS THR VAL ASP ASP ARG PRO TYR GLY GLY GLY SEQRES 6 A 254 PRO GLY MET LEU MET MET VAL GLN PRO LEU ARG ASP ALA SEQRES 7 A 254 ILE HIS THR ALA LYS ALA ALA ALA GLY GLU GLY ALA LYS SEQRES 8 A 254 VAL ILE TYR LEU SER PRO GLN GLY ARG LYS LEU ASP GLN SEQRES 9 A 254 GLY GLY VAL THR GLU LEU ALA GLN ASN GLN LYS LEU ILE SEQRES 10 A 254 LEU VAL CYS GLY ARG TYR GLU GLY ILE ASP GLU ARG LEU SEQRES 11 A 254 ILE GLN THR GLU ILE ASP GLU GLU TRP SER ILE GLY ASP SEQRES 12 A 254 TYR VAL LEU THR GLY GLY GLU LEU PRO ALA MET THR LEU SEQRES 13 A 254 ILE ASP ALA VAL ALA ARG PHE ILE PRO GLY VAL LEU GLY SEQRES 14 A 254 LYS GLN ALA SER ALA GLU GLU ASP SER PHE ALA ASP GLY SEQRES 15 A 254 LEU LEU ASP CYS PRO HIS TYR THR ARG PRO GLU VAL LEU SEQRES 16 A 254 GLU GLY LEU THR VAL PRO PRO VAL LEU MET SER GLY HIS SEQRES 17 A 254 HIS GLU GLU ILE ARG LYS TRP ARG LEU LYS GLN SER LEU SEQRES 18 A 254 GLN ARG THR TRP LEU ARG ARG PRO GLU LEU LEU GLU GLY SEQRES 19 A 254 LEU ALA LEU THR ASP GLU GLN ARG LYS LEU LEU LYS GLU SEQRES 20 A 254 ALA GLN ALA GLU HIS ASN SER HET 4FL A 301 11 HETNAM 4FL 4-(1H-IMIDAZOL-2-YL)PYRIDINE FORMUL 2 4FL C8 H7 N3 FORMUL 3 HOH *137(H2 O) HELIX 1 AA1 PHE A 9 MET A 12 5 4 HELIX 2 AA2 PHE A 13 GLU A 18 1 6 HELIX 3 AA3 PHE A 19 HIS A 28 1 10 HELIX 4 AA4 ASN A 37 THR A 42 5 6 HELIX 5 AA5 MET A 63 GLY A 79 1 17 HELIX 6 AA6 ASP A 95 ALA A 103 1 9 HELIX 7 AA7 ASP A 119 ILE A 127 1 9 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 193 SER A 198 5 6 HELIX 10 AB1 HIS A 200 ARG A 220 1 21 HELIX 11 AB2 ARG A 220 GLY A 226 1 7 HELIX 12 AB3 THR A 230 ASN A 245 1 16 SHEET 1 AA1 6 LEU A 31 TRP A 36 0 SHEET 2 AA1 6 MET A 1 ILE A 6 1 N VAL A 5 O GLU A 34 SHEET 3 AA1 6 LYS A 107 CYS A 112 1 O LEU A 110 N GLY A 4 SHEET 4 AA1 6 LYS A 83 LEU A 87 1 N ILE A 85 O ILE A 109 SHEET 5 AA1 6 GLU A 129 SER A 132 1 O GLU A 129 N TYR A 86 SHEET 6 AA1 6 ARG A 92 LYS A 93 1 N ARG A 92 O SER A 132 SHEET 1 AA2 2 ASP A 50 ASP A 51 0 SHEET 2 AA2 2 LEU A 61 MET A 62 -1 O LEU A 61 N ASP A 51 SHEET 1 AA3 2 VAL A 186 LEU A 187 0 SHEET 2 AA3 2 LEU A 190 THR A 191 -1 O LEU A 190 N LEU A 187 CISPEP 1 ARG A 183 PRO A 184 0 2.91 SITE 1 AC1 10 LEU A 87 SER A 88 SER A 132 ILE A 133 SITE 2 AC1 10 LEU A 138 GLY A 140 GLY A 141 PRO A 144 SITE 3 AC1 10 HOH A 411 HOH A 415 CRYST1 93.773 93.773 179.162 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010664 0.006157 0.000000 0.00000 SCALE2 0.000000 0.012314 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005582 0.00000