HEADER TRANSFERASE/TRANSFERASE INHIBITOR 13-MAR-15 4YQC TITLE CRYSTAL STRUCTURE OF TRMD, A M1G37 TRNA METHYLTRANSFERASE WITH SAM- TITLE 2 COMPETITIVE COMPOUNDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE (STRAIN ATCC 51907 / DSM SOURCE 3 11121 / KW20 / RD); SOURCE 4 ORGANISM_TAXID: 71421; SOURCE 5 STRAIN: ATCC 51907 / DSM 11121 / KW20 / RD; SOURCE 6 GENE: TRMD, HI_0202; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21*(DE3)PGRO7; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TRMD, SAM-BINDING, KNOT, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.A.ELKINS,W.G.BONNETTE,J.A.STUCKEY REVDAT 2 27-SEP-23 4YQC 1 REMARK REVDAT 1 16-MAR-16 4YQC 0 JRNL AUTH P.A.ELKINS,W.G.BONNETTE JRNL TITL CRYSTAL STRUCTURE OF TRMD, A M1G37 TRNA METHYLTRANSFERASE JRNL TITL 2 WITH SAM-COMPETITIVE COMPOUNDS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 24523 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.490 REMARK 3 FREE R VALUE TEST SET COUNT : 1592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1273 - 4.1996 1.00 2194 153 0.1618 0.1672 REMARK 3 2 4.1996 - 3.3349 1.00 2124 147 0.1479 0.1743 REMARK 3 3 3.3349 - 2.9138 1.00 2091 145 0.1782 0.2014 REMARK 3 4 2.9138 - 2.6476 1.00 2090 146 0.1608 0.2071 REMARK 3 5 2.6476 - 2.4579 1.00 2086 145 0.1607 0.1873 REMARK 3 6 2.4579 - 2.3130 1.00 2072 144 0.1586 0.2021 REMARK 3 7 2.3130 - 2.1972 1.00 2067 143 0.1486 0.1796 REMARK 3 8 2.1972 - 2.1016 0.99 2040 141 0.1501 0.1690 REMARK 3 9 2.1016 - 2.0207 1.00 2070 144 0.1457 0.1947 REMARK 3 10 2.0207 - 1.9510 0.99 2045 142 0.1520 0.1786 REMARK 3 11 1.9510 - 1.8900 0.99 2052 142 0.1711 0.2123 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1930 REMARK 3 ANGLE : 1.030 2616 REMARK 3 CHIRALITY : 0.043 289 REMARK 3 PLANARITY : 0.005 341 REMARK 3 DIHEDRAL : 12.186 728 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID -1:34) REMARK 3 ORIGIN FOR THE GROUP (A): -25.2509 23.2096 -3.1584 REMARK 3 T TENSOR REMARK 3 T11: 0.1503 T22: 0.1659 REMARK 3 T33: 0.1580 T12: -0.0596 REMARK 3 T13: 0.0060 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.0710 L22: 0.0944 REMARK 3 L33: 0.2482 L12: 0.0719 REMARK 3 L13: 0.1722 L23: 0.1708 REMARK 3 S TENSOR REMARK 3 S11: -0.1190 S12: 0.1034 S13: -0.1921 REMARK 3 S21: -0.1057 S22: 0.0714 S23: -0.0015 REMARK 3 S31: 0.3069 S32: -0.1694 S33: -0.0106 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 35:160) REMARK 3 ORIGIN FOR THE GROUP (A): -23.7181 34.1247 -13.6358 REMARK 3 T TENSOR REMARK 3 T11: 0.1139 T22: 0.1197 REMARK 3 T33: 0.1192 T12: -0.0110 REMARK 3 T13: -0.0112 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.1940 L22: 0.7846 REMARK 3 L33: 1.1771 L12: -0.2463 REMARK 3 L13: -0.0101 L23: 0.3510 REMARK 3 S TENSOR REMARK 3 S11: 0.0298 S12: 0.0136 S13: -0.0124 REMARK 3 S21: -0.1535 S22: -0.0189 S23: 0.0364 REMARK 3 S31: -0.1158 S32: -0.1148 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 161:223) REMARK 3 ORIGIN FOR THE GROUP (A): -33.7379 43.2060 22.8021 REMARK 3 T TENSOR REMARK 3 T11: 0.1592 T22: 0.2193 REMARK 3 T33: 0.2115 T12: 0.0581 REMARK 3 T13: -0.0008 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.5669 L22: 0.7937 REMARK 3 L33: 0.0659 L12: -0.3496 REMARK 3 L13: -0.1249 L23: 0.0529 REMARK 3 S TENSOR REMARK 3 S11: -0.0459 S12: -0.1167 S13: -0.0225 REMARK 3 S21: -0.0026 S22: 0.1487 S23: 0.2090 REMARK 3 S31: -0.0154 S32: -0.0219 S33: 0.0613 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 224:246) REMARK 3 ORIGIN FOR THE GROUP (A): -42.3149 53.8851 18.2751 REMARK 3 T TENSOR REMARK 3 T11: 0.2483 T22: 0.3308 REMARK 3 T33: 0.2888 T12: 0.0327 REMARK 3 T13: -0.0281 T23: -0.0486 REMARK 3 L TENSOR REMARK 3 L11: 0.1103 L22: 0.1540 REMARK 3 L33: 0.2104 L12: 0.0897 REMARK 3 L13: -0.0905 L23: -0.1293 REMARK 3 S TENSOR REMARK 3 S11: -0.0386 S12: -0.0527 S13: 0.3800 REMARK 3 S21: -0.0934 S22: 0.1308 S23: 0.1662 REMARK 3 S31: -0.5791 S32: -0.2240 S33: 0.0005 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YQC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000207790. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : UNKNOWN REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30783 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.66700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1P9P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION:( 12/MG/ML IN 100MM REMARK 280 HEPES PH 7.5, 150MM NACL, 10MM MGCL2 2MM DTT) WELL SOLUTION: (20% REMARK 280 PEG3,350 AND 0.2M POTASSIUM CITRATE TRIBASIC MONOHYDRATE). 4UL REMARK 280 OF S-ADENOSYL METHIONINE IN WATER WERE ADDED TO 100UL OF PROTEIN REMARK 280 AND ALLOWED TO INCUBATE ON ICE FOR 1 HOUR BEFORE PROTEIN WAS REMARK 280 MIXED WITH WELL AT 1:1 RATIO.SEEDING USED TO IMPROVE CRYSTALS. REMARK 280 COMPOUND STOCK SOLUTIONS (EITHER 100MM OR 1M STOCKS) WERE ADDED REMARK 280 UP TO A FINAL DROP CONCENTRATION OF 4.8% DMSO. CRYSTALS WERE REMARK 280 SOAKED FOR 4-6 HOURS. 20% GLYCEROL IN WELL SOLUTION WAS USED AS REMARK 280 CRYOPROTECTANT FOR A QUICK DIP OF CRYSTAL IN LIQUID N2., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 47.09100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.18800 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 59.21167 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 47.09100 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 27.18800 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 59.21167 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 47.09100 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 27.18800 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 59.21167 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 47.09100 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 27.18800 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 59.21167 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 47.09100 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 27.18800 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 59.21167 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 47.09100 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 27.18800 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 59.21167 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.37600 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 118.42333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 54.37600 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 118.42333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 54.37600 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 118.42333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 54.37600 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 118.42333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 54.37600 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 118.42333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 54.37600 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 118.42333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 546 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 565 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 573 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 583 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 LYS A 162 REMARK 465 GLN A 163 REMARK 465 ALA A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLU A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 PHE A 171 REMARK 465 ALA A 172 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -1 OG REMARK 470 LYS A 45 CE NZ REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 GLN A 106 CG CD OE1 NE2 REMARK 470 HIS A 200 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 206 CE NZ REMARK 470 LYS A 235 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 115 -133.84 54.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EFW A 301 DBREF 4YQC A 1 246 UNP P43912 TRMD_HAEIN 1 246 SEQADV 4YQC GLY A -7 UNP P43912 EXPRESSION TAG SEQADV 4YQC LEU A -6 UNP P43912 EXPRESSION TAG SEQADV 4YQC VAL A -5 UNP P43912 EXPRESSION TAG SEQADV 4YQC PRO A -4 UNP P43912 EXPRESSION TAG SEQADV 4YQC ARG A -3 UNP P43912 EXPRESSION TAG SEQADV 4YQC GLY A -2 UNP P43912 EXPRESSION TAG SEQADV 4YQC SER A -1 UNP P43912 EXPRESSION TAG SEQADV 4YQC HIS A 0 UNP P43912 EXPRESSION TAG SEQRES 1 A 254 GLY LEU VAL PRO ARG GLY SER HIS MET TRP ILE GLY VAL SEQRES 2 A 254 ILE SER LEU PHE PRO GLU MET PHE LYS ALA ILE THR GLU SEQRES 3 A 254 PHE GLY VAL THR GLY ARG ALA VAL LYS HIS ASN LEU LEU SEQRES 4 A 254 LYS VAL GLU CYS TRP ASN PRO ARG ASP PHE THR PHE ASP SEQRES 5 A 254 LYS HIS LYS THR VAL ASP ASP ARG PRO TYR GLY GLY GLY SEQRES 6 A 254 PRO GLY MET LEU MET MET VAL GLN PRO LEU ARG ASP ALA SEQRES 7 A 254 ILE HIS THR ALA LYS ALA ALA ALA GLY GLU GLY ALA LYS SEQRES 8 A 254 VAL ILE TYR LEU SER PRO GLN GLY ARG LYS LEU ASP GLN SEQRES 9 A 254 GLY GLY VAL THR GLU LEU ALA GLN ASN GLN LYS LEU ILE SEQRES 10 A 254 LEU VAL CYS GLY ARG TYR GLU GLY ILE ASP GLU ARG LEU SEQRES 11 A 254 ILE GLN THR GLU ILE ASP GLU GLU TRP SER ILE GLY ASP SEQRES 12 A 254 TYR VAL LEU THR GLY GLY GLU LEU PRO ALA MET THR LEU SEQRES 13 A 254 ILE ASP ALA VAL ALA ARG PHE ILE PRO GLY VAL LEU GLY SEQRES 14 A 254 LYS GLN ALA SER ALA GLU GLU ASP SER PHE ALA ASP GLY SEQRES 15 A 254 LEU LEU ASP CYS PRO HIS TYR THR ARG PRO GLU VAL LEU SEQRES 16 A 254 GLU GLY LEU THR VAL PRO PRO VAL LEU MET SER GLY HIS SEQRES 17 A 254 HIS GLU GLU ILE ARG LYS TRP ARG LEU LYS GLN SER LEU SEQRES 18 A 254 GLN ARG THR TRP LEU ARG ARG PRO GLU LEU LEU GLU GLY SEQRES 19 A 254 LEU ALA LEU THR ASP GLU GLN ARG LYS LEU LEU LYS GLU SEQRES 20 A 254 ALA GLN ALA GLU HIS ASN SER HET EFW A 301 16 HETNAM EFW 6-{[(1R,3R)-3-HYDROXYCYCLOPENTYL]AMINO}PYRIDINE-3- HETNAM 2 EFW CARBOXAMIDE FORMUL 2 EFW C11 H15 N3 O2 FORMUL 3 HOH *184(H2 O) HELIX 1 AA1 PHE A 9 MET A 12 5 4 HELIX 2 AA2 PHE A 13 GLU A 18 1 6 HELIX 3 AA3 PHE A 19 HIS A 28 1 10 HELIX 4 AA4 ASN A 37 THR A 42 5 6 HELIX 5 AA5 MET A 63 GLY A 79 1 17 HELIX 6 AA6 ASP A 95 ALA A 103 1 9 HELIX 7 AA7 ASP A 119 ILE A 127 1 9 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 193 SER A 198 5 6 HELIX 10 AB1 HIS A 200 ARG A 220 1 21 HELIX 11 AB2 ARG A 220 GLY A 226 1 7 HELIX 12 AB3 THR A 230 ASN A 245 1 16 SHEET 1 AA1 6 LEU A 31 TRP A 36 0 SHEET 2 AA1 6 MET A 1 ILE A 6 1 N ILE A 3 O LYS A 32 SHEET 3 AA1 6 LYS A 107 VAL A 111 1 O LEU A 110 N GLY A 4 SHEET 4 AA1 6 LYS A 83 LEU A 87 1 N ILE A 85 O ILE A 109 SHEET 5 AA1 6 GLU A 129 SER A 132 1 O TRP A 131 N TYR A 86 SHEET 6 AA1 6 ARG A 92 LYS A 93 1 N ARG A 92 O SER A 132 SHEET 1 AA2 2 ASP A 50 ASP A 51 0 SHEET 2 AA2 2 LEU A 61 MET A 62 -1 O LEU A 61 N ASP A 51 SHEET 1 AA3 2 VAL A 186 LEU A 187 0 SHEET 2 AA3 2 LEU A 190 THR A 191 -1 O LEU A 190 N LEU A 187 CISPEP 1 ARG A 183 PRO A 184 0 3.45 SITE 1 AC1 14 TYR A 86 LEU A 87 SER A 88 PRO A 89 SITE 2 AC1 14 GLY A 113 TYR A 115 GLY A 117 SER A 132 SITE 3 AC1 14 ILE A 133 GLY A 134 TYR A 136 LEU A 138 SITE 4 AC1 14 PRO A 144 HOH A 415 CRYST1 94.182 94.182 177.635 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010618 0.006130 0.000000 0.00000 SCALE2 0.000000 0.012260 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005630 0.00000