data_4YQO # _entry.id 4YQO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4YQO pdb_00004yqo 10.2210/pdb4yqo/pdb WWPDB D_1000207823 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 4YPW PDB . unspecified 4YPX PDB . unspecified 4YPZ PDB . unspecified 4YQ0 PDB . unspecified 4YQ1 PDB . unspecified 4YQ2 PDB . unspecified 4YQ3 PDB . unspecified 4YQ4 PDB . unspecified 4YQ5 PDB . unspecified 4YQ6 PDB . unspecified 4YQ7 PDB . unspecified 4YQ8 PDB . unspecified 4YQ9 PDB . unspecified 4YQA PDB . unspecified 4YQB PDB . unspecified 4YQC PDB . unspecified 4YQD PDB . unspecified 4YQG PDB . unspecified 4YQI PDB . unspecified 4YQJ PDB . unspecified 4YQK PDB . unspecified 4YQL PDB . unspecified 4YQN PDB . unspecified 4YQP PDB . unspecified 4YQQ PDB . unspecified 4YQR PDB . unspecified 4YQS PDB . unspecified 4YQT PDB . unspecified 4YPY PDB . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4YQO _pdbx_database_status.recvd_initial_deposition_date 2015-03-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Elkins, P.A.' 1 'Bonnette, W.G.' 2 'Madauss, K.P.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Elkins, P.A.' 1 ? primary 'Bonnette, W.G.' 2 ? primary 'Williams, S.P.' 3 ? primary 'Stuckey, J.A.' 4 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 4YQO _cell.details ? _cell.formula_units_Z ? _cell.length_a 94.389 _cell.length_a_esd ? _cell.length_b 94.389 _cell.length_b_esd ? _cell.length_c 178.558 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 18 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'tRNA (guanine-N(1)-)-methyltransferase' 28384.576 1 2.1.1.228 ? ? ? 2 non-polymer syn '6-({[(1R,3S)-3-(aminomethyl)cyclohexyl]methyl}amino)pyridine-3-carboxamide' 262.351 1 ? ? ? ? 3 water nat water 18.015 175 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'M1G-methyltransferase,tRNA [GM37] methyltransferase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GLVPRGSHMWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIH TAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAV ARFIPGVLGKQASAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDE QRKLLKEAQAEHNS ; _entity_poly.pdbx_seq_one_letter_code_can ;GLVPRGSHMWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIH TAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAV ARFIPGVLGKQASAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDE QRKLLKEAQAEHNS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LEU n 1 3 VAL n 1 4 PRO n 1 5 ARG n 1 6 GLY n 1 7 SER n 1 8 HIS n 1 9 MET n 1 10 TRP n 1 11 ILE n 1 12 GLY n 1 13 VAL n 1 14 ILE n 1 15 SER n 1 16 LEU n 1 17 PHE n 1 18 PRO n 1 19 GLU n 1 20 MET n 1 21 PHE n 1 22 LYS n 1 23 ALA n 1 24 ILE n 1 25 THR n 1 26 GLU n 1 27 PHE n 1 28 GLY n 1 29 VAL n 1 30 THR n 1 31 GLY n 1 32 ARG n 1 33 ALA n 1 34 VAL n 1 35 LYS n 1 36 HIS n 1 37 ASN n 1 38 LEU n 1 39 LEU n 1 40 LYS n 1 41 VAL n 1 42 GLU n 1 43 CYS n 1 44 TRP n 1 45 ASN n 1 46 PRO n 1 47 ARG n 1 48 ASP n 1 49 PHE n 1 50 THR n 1 51 PHE n 1 52 ASP n 1 53 LYS n 1 54 HIS n 1 55 LYS n 1 56 THR n 1 57 VAL n 1 58 ASP n 1 59 ASP n 1 60 ARG n 1 61 PRO n 1 62 TYR n 1 63 GLY n 1 64 GLY n 1 65 GLY n 1 66 PRO n 1 67 GLY n 1 68 MET n 1 69 LEU n 1 70 MET n 1 71 MET n 1 72 VAL n 1 73 GLN n 1 74 PRO n 1 75 LEU n 1 76 ARG n 1 77 ASP n 1 78 ALA n 1 79 ILE n 1 80 HIS n 1 81 THR n 1 82 ALA n 1 83 LYS n 1 84 ALA n 1 85 ALA n 1 86 ALA n 1 87 GLY n 1 88 GLU n 1 89 GLY n 1 90 ALA n 1 91 LYS n 1 92 VAL n 1 93 ILE n 1 94 TYR n 1 95 LEU n 1 96 SER n 1 97 PRO n 1 98 GLN n 1 99 GLY n 1 100 ARG n 1 101 LYS n 1 102 LEU n 1 103 ASP n 1 104 GLN n 1 105 GLY n 1 106 GLY n 1 107 VAL n 1 108 THR n 1 109 GLU n 1 110 LEU n 1 111 ALA n 1 112 GLN n 1 113 ASN n 1 114 GLN n 1 115 LYS n 1 116 LEU n 1 117 ILE n 1 118 LEU n 1 119 VAL n 1 120 CYS n 1 121 GLY n 1 122 ARG n 1 123 TYR n 1 124 GLU n 1 125 GLY n 1 126 ILE n 1 127 ASP n 1 128 GLU n 1 129 ARG n 1 130 LEU n 1 131 ILE n 1 132 GLN n 1 133 THR n 1 134 GLU n 1 135 ILE n 1 136 ASP n 1 137 GLU n 1 138 GLU n 1 139 TRP n 1 140 SER n 1 141 ILE n 1 142 GLY n 1 143 ASP n 1 144 TYR n 1 145 VAL n 1 146 LEU n 1 147 THR n 1 148 GLY n 1 149 GLY n 1 150 GLU n 1 151 LEU n 1 152 PRO n 1 153 ALA n 1 154 MET n 1 155 THR n 1 156 LEU n 1 157 ILE n 1 158 ASP n 1 159 ALA n 1 160 VAL n 1 161 ALA n 1 162 ARG n 1 163 PHE n 1 164 ILE n 1 165 PRO n 1 166 GLY n 1 167 VAL n 1 168 LEU n 1 169 GLY n 1 170 LYS n 1 171 GLN n 1 172 ALA n 1 173 SER n 1 174 ALA n 1 175 GLU n 1 176 GLU n 1 177 ASP n 1 178 SER n 1 179 PHE n 1 180 ALA n 1 181 ASP n 1 182 GLY n 1 183 LEU n 1 184 LEU n 1 185 ASP n 1 186 CYS n 1 187 PRO n 1 188 HIS n 1 189 TYR n 1 190 THR n 1 191 ARG n 1 192 PRO n 1 193 GLU n 1 194 VAL n 1 195 LEU n 1 196 GLU n 1 197 GLY n 1 198 LEU n 1 199 THR n 1 200 VAL n 1 201 PRO n 1 202 PRO n 1 203 VAL n 1 204 LEU n 1 205 MET n 1 206 SER n 1 207 GLY n 1 208 HIS n 1 209 HIS n 1 210 GLU n 1 211 GLU n 1 212 ILE n 1 213 ARG n 1 214 LYS n 1 215 TRP n 1 216 ARG n 1 217 LEU n 1 218 LYS n 1 219 GLN n 1 220 SER n 1 221 LEU n 1 222 GLN n 1 223 ARG n 1 224 THR n 1 225 TRP n 1 226 LEU n 1 227 ARG n 1 228 ARG n 1 229 PRO n 1 230 GLU n 1 231 LEU n 1 232 LEU n 1 233 GLU n 1 234 GLY n 1 235 LEU n 1 236 ALA n 1 237 LEU n 1 238 THR n 1 239 ASP n 1 240 GLU n 1 241 GLN n 1 242 ARG n 1 243 LYS n 1 244 LEU n 1 245 LEU n 1 246 LYS n 1 247 GLU n 1 248 ALA n 1 249 GLN n 1 250 ALA n 1 251 GLU n 1 252 HIS n 1 253 ASN n 1 254 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 254 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'trmD, HI_0202' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 51907 / DSM 11121 / KW20 / Rd' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 71421 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21*(DE3)pGro7' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TRMD_HAEIN _struct_ref.pdbx_db_accession P43912 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGE GAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVL GKQASAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKEA QAEHNS ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4YQO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 9 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 254 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P43912 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 246 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 246 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4YQO GLY A 1 ? UNP P43912 ? ? 'expression tag' -7 1 1 4YQO LEU A 2 ? UNP P43912 ? ? 'expression tag' -6 2 1 4YQO VAL A 3 ? UNP P43912 ? ? 'expression tag' -5 3 1 4YQO PRO A 4 ? UNP P43912 ? ? 'expression tag' -4 4 1 4YQO ARG A 5 ? UNP P43912 ? ? 'expression tag' -3 5 1 4YQO GLY A 6 ? UNP P43912 ? ? 'expression tag' -2 6 1 4YQO SER A 7 ? UNP P43912 ? ? 'expression tag' -1 7 1 4YQO HIS A 8 ? UNP P43912 ? ? 'expression tag' 0 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4H1 non-polymer . '6-({[(1R,3S)-3-(aminomethyl)cyclohexyl]methyl}amino)pyridine-3-carboxamide' ? 'C14 H22 N4 O' 262.351 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4YQO _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.70 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 54.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;Protein solution:( 12/mg/mL in 100mM HEPES pH 7.5, 150mM NaCl, 10mM MgCl2 2mM DTT) Well solution: (20% PEG3,350 and 0.2M potassium citrate tribasic monohydrate). 4uL of S-adenosyl methionine in water were added to 100uL of protein and allowed to incubate on ice for 1 hour before protein was mixed with well at 1:1 ratio.Seeding used to improve crystals. Compound stock solutions (either 100mM or 1M stocks) were added up to a final drop concentration of 4.8% DMSO. Crystals were soaked for 4-6 hours. 20% glycerol in well solution was used as cryoprotectant for a quick dip of crystal in liquid N2. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2010-06-23 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator unknown _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97872 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97872 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 21.850 _reflns.entry_id 4YQO _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.680 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 35242 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.800 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.500 _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 22.662 _reflns.pdbx_netI_over_sigmaI 10.100 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.038 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 194239 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.680 1.740 ? ? ? ? ? 3445 ? 100.000 ? ? ? ? 0.589 ? ? ? ? ? ? ? ? 5.500 ? 1.052 ? ? ? ? 0 1 1 ? ? 1.740 1.810 ? ? ? ? ? 3497 ? 100.000 ? ? ? ? 0.413 ? ? ? ? ? ? ? ? 5.500 ? 1.030 ? ? ? ? 0 2 1 ? ? 1.810 1.890 ? ? ? ? ? 3504 ? 100.000 ? ? ? ? 0.293 ? ? ? ? ? ? ? ? 5.600 ? 1.034 ? ? ? ? 0 3 1 ? ? 1.890 1.990 ? ? ? ? ? 3491 ? 100.000 ? ? ? ? 0.205 ? ? ? ? ? ? ? ? 5.600 ? 1.039 ? ? ? ? 0 4 1 ? ? 1.990 2.120 ? ? ? ? ? 3526 ? 100.000 ? ? ? ? 0.151 ? ? ? ? ? ? ? ? 5.600 ? 1.007 ? ? ? ? 0 5 1 ? ? 2.120 2.280 ? ? ? ? ? 3493 ? 100.000 ? ? ? ? 0.109 ? ? ? ? ? ? ? ? 5.600 ? 1.027 ? ? ? ? 0 6 1 ? ? 2.280 2.510 ? ? ? ? ? 3527 ? 100.000 ? ? ? ? 0.084 ? ? ? ? ? ? ? ? 5.600 ? 1.044 ? ? ? ? 0 7 1 ? ? 2.510 2.870 ? ? ? ? ? 3554 ? 100.000 ? ? ? ? 0.073 ? ? ? ? ? ? ? ? 5.500 ? 1.051 ? ? ? ? 0 8 1 ? ? 2.870 3.620 ? ? ? ? ? 3560 ? 99.900 ? ? ? ? 0.052 ? ? ? ? ? ? ? ? 5.500 ? 1.051 ? ? ? ? 0 9 1 ? ? 3.620 50.000 ? ? ? ? ? 3645 ? 98.500 ? ? ? ? 0.048 ? ? ? ? ? ? ? ? 5.200 ? 1.051 ? ? ? ? 0 10 1 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 76.920 _refine.B_iso_mean 22.5000 _refine.B_iso_min 8.160 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4YQO _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.680 _refine.ls_d_res_low 39.8410 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 35230 _refine.ls_number_reflns_R_free 1997 _refine.ls_number_reflns_R_work 33233 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.7400 _refine.ls_percent_reflns_R_free 5.6700 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1794 _refine.ls_R_factor_R_free 0.2021 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1780 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1P9P _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details 'Random Selection' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 19.9200 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1700 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set 0.8702 _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.680 _refine_hist.d_res_low 39.8410 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 175 _refine_hist.number_atoms_total 2076 _refine_hist.pdbx_number_residues_total 242 _refine_hist.pdbx_B_iso_mean_ligand 17.73 _refine_hist.pdbx_B_iso_mean_solvent 31.74 _refine_hist.pdbx_number_atoms_protein 1882 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.013 ? 1967 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.322 ? 2669 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.114 ? 297 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.011 ? 343 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 14.343 ? 741 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.6774 1.7193 2454 . 139 2315 99.0000 . . . 0.2606 . 0.2170 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 1.7193 1.7658 2468 . 140 2328 100.0000 . . . 0.2270 . 0.2028 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 1.7658 1.8178 2515 . 141 2374 100.0000 . . . 0.2271 . 0.1962 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 1.8178 1.8764 2496 . 142 2354 100.0000 . . . 0.2347 . 0.1867 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 1.8764 1.9435 2489 . 141 2348 100.0000 . . . 0.2373 . 0.1859 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 1.9435 2.0213 2507 . 142 2365 100.0000 . . . 0.2113 . 0.1860 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 2.0213 2.1133 2512 . 143 2369 100.0000 . . . 0.2215 . 0.1801 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 2.1133 2.2247 2499 . 142 2357 100.0000 . . . 0.2077 . 0.1641 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 2.2247 2.3641 2528 . 144 2384 100.0000 . . . 0.2204 . 0.1799 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 2.3641 2.5466 2519 . 142 2377 100.0000 . . . 0.1984 . 0.1848 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 2.5466 2.8028 2527 . 144 2383 100.0000 . . . 0.2459 . 0.1830 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 2.8028 3.2082 2546 . 144 2402 100.0000 . . . 0.2080 . 0.1850 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 3.2082 4.0414 2556 . 145 2411 100.0000 . . . 0.1791 . 0.1594 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 4.0414 39.8525 2614 . 148 2466 98.0000 . . . 0.1722 . 0.1771 . . . . . . 14 . . . # _struct.entry_id 4YQO _struct.title 'Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4YQO _struct_keywords.text 'TrmD, SAM-binding, knot, transferase-transferase inhibitor complex' _struct_keywords.pdbx_keywords 'transferase/transferase inhibitor' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PHE A 17 ? MET A 20 ? PHE A 9 MET A 12 5 ? 4 HELX_P HELX_P2 AA2 PHE A 21 ? GLU A 26 ? PHE A 13 GLU A 18 1 ? 6 HELX_P HELX_P3 AA3 PHE A 27 ? HIS A 36 ? PHE A 19 HIS A 28 1 ? 10 HELX_P HELX_P4 AA4 ASN A 45 ? THR A 50 ? ASN A 37 THR A 42 5 ? 6 HELX_P HELX_P5 AA5 MET A 71 ? GLY A 87 ? MET A 63 GLY A 79 1 ? 17 HELX_P HELX_P6 AA6 ASP A 103 ? ALA A 111 ? ASP A 95 ALA A 103 1 ? 9 HELX_P HELX_P7 AA7 ASP A 127 ? ILE A 135 ? ASP A 119 ILE A 127 1 ? 9 HELX_P HELX_P8 AA8 GLY A 149 ? ARG A 162 ? GLY A 141 ARG A 154 1 ? 14 HELX_P HELX_P9 AA9 PRO A 201 ? SER A 206 ? PRO A 193 SER A 198 5 ? 6 HELX_P HELX_P10 AB1 HIS A 208 ? ARG A 228 ? HIS A 200 ARG A 220 1 ? 21 HELX_P HELX_P11 AB2 ARG A 228 ? GLY A 234 ? ARG A 220 GLY A 226 1 ? 7 HELX_P HELX_P12 AB3 THR A 238 ? ASN A 253 ? THR A 230 ASN A 245 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ARG _struct_mon_prot_cis.label_seq_id 191 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ARG _struct_mon_prot_cis.auth_seq_id 183 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 192 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 184 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 6.62 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 2 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 39 ? TRP A 44 ? LEU A 31 TRP A 36 AA1 2 MET A 9 ? ILE A 14 ? MET A 1 ILE A 6 AA1 3 LYS A 115 ? CYS A 120 ? LYS A 107 CYS A 112 AA1 4 LYS A 91 ? LEU A 95 ? LYS A 83 LEU A 87 AA1 5 GLU A 137 ? SER A 140 ? GLU A 129 SER A 132 AA1 6 ARG A 100 ? LYS A 101 ? ARG A 92 LYS A 93 AA2 1 ASP A 58 ? ASP A 59 ? ASP A 50 ASP A 51 AA2 2 LEU A 69 ? MET A 70 ? LEU A 61 MET A 62 AA3 1 VAL A 194 ? LEU A 195 ? VAL A 186 LEU A 187 AA3 2 LEU A 198 ? THR A 199 ? LEU A 190 THR A 191 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LYS A 40 ? O LYS A 32 N ILE A 11 ? N ILE A 3 AA1 2 3 N GLY A 12 ? N GLY A 4 O LEU A 116 ? O LEU A 108 AA1 3 4 O ILE A 117 ? O ILE A 109 N ILE A 93 ? N ILE A 85 AA1 4 5 N TYR A 94 ? N TYR A 86 O GLU A 137 ? O GLU A 129 AA1 5 6 O SER A 140 ? O SER A 132 N ARG A 100 ? N ARG A 92 AA2 1 2 N ASP A 59 ? N ASP A 51 O LEU A 69 ? O LEU A 61 AA3 1 2 N LEU A 195 ? N LEU A 187 O LEU A 198 ? O LEU A 190 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 4H1 _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 14 _struct_site.details 'binding site for residue 4H1 A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 TYR A 94 ? TYR A 86 . ? 1_555 ? 2 AC1 14 LEU A 95 ? LEU A 87 . ? 1_555 ? 3 AC1 14 SER A 96 ? SER A 88 . ? 1_555 ? 4 AC1 14 GLY A 121 ? GLY A 113 . ? 1_555 ? 5 AC1 14 GLU A 124 ? GLU A 116 . ? 1_555 ? 6 AC1 14 GLY A 125 ? GLY A 117 . ? 1_555 ? 7 AC1 14 SER A 140 ? SER A 132 . ? 1_555 ? 8 AC1 14 ILE A 141 ? ILE A 133 . ? 1_555 ? 9 AC1 14 GLY A 142 ? GLY A 134 . ? 1_555 ? 10 AC1 14 TYR A 144 ? TYR A 136 . ? 1_555 ? 11 AC1 14 LEU A 146 ? LEU A 138 . ? 1_555 ? 12 AC1 14 GLY A 148 ? GLY A 140 . ? 1_555 ? 13 AC1 14 PRO A 152 ? PRO A 144 . ? 1_555 ? 14 AC1 14 ASP A 185 ? ASP A 177 . ? 6_555 ? # _atom_sites.entry_id 4YQO _atom_sites.fract_transf_matrix[1][1] 0.010594 _atom_sites.fract_transf_matrix[1][2] 0.006117 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012233 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005600 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -7 -7 GLY GLY A . n A 1 2 LEU 2 -6 -6 LEU LEU A . n A 1 3 VAL 3 -5 -5 VAL VAL A . n A 1 4 PRO 4 -4 -4 PRO PRO A . n A 1 5 ARG 5 -3 -3 ARG ARG A . n A 1 6 GLY 6 -2 -2 GLY GLY A . n A 1 7 SER 7 -1 -1 SER SER A . n A 1 8 HIS 8 0 0 HIS HIS A . n A 1 9 MET 9 1 1 MET MET A . n A 1 10 TRP 10 2 2 TRP TRP A . n A 1 11 ILE 11 3 3 ILE ILE A . n A 1 12 GLY 12 4 4 GLY GLY A . n A 1 13 VAL 13 5 5 VAL VAL A . n A 1 14 ILE 14 6 6 ILE ILE A . n A 1 15 SER 15 7 7 SER SER A . n A 1 16 LEU 16 8 8 LEU LEU A . n A 1 17 PHE 17 9 9 PHE PHE A . n A 1 18 PRO 18 10 10 PRO PRO A . n A 1 19 GLU 19 11 11 GLU GLU A . n A 1 20 MET 20 12 12 MET MET A . n A 1 21 PHE 21 13 13 PHE PHE A . n A 1 22 LYS 22 14 14 LYS LYS A . n A 1 23 ALA 23 15 15 ALA ALA A . n A 1 24 ILE 24 16 16 ILE ILE A . n A 1 25 THR 25 17 17 THR THR A . n A 1 26 GLU 26 18 18 GLU GLU A . n A 1 27 PHE 27 19 19 PHE PHE A . n A 1 28 GLY 28 20 20 GLY GLY A . n A 1 29 VAL 29 21 21 VAL VAL A . n A 1 30 THR 30 22 22 THR THR A . n A 1 31 GLY 31 23 23 GLY GLY A . n A 1 32 ARG 32 24 24 ARG ARG A . n A 1 33 ALA 33 25 25 ALA ALA A . n A 1 34 VAL 34 26 26 VAL VAL A . n A 1 35 LYS 35 27 27 LYS LYS A . n A 1 36 HIS 36 28 28 HIS HIS A . n A 1 37 ASN 37 29 29 ASN ASN A . n A 1 38 LEU 38 30 30 LEU LEU A . n A 1 39 LEU 39 31 31 LEU LEU A . n A 1 40 LYS 40 32 32 LYS LYS A . n A 1 41 VAL 41 33 33 VAL VAL A . n A 1 42 GLU 42 34 34 GLU GLU A . n A 1 43 CYS 43 35 35 CYS CYS A . n A 1 44 TRP 44 36 36 TRP TRP A . n A 1 45 ASN 45 37 37 ASN ASN A . n A 1 46 PRO 46 38 38 PRO PRO A . n A 1 47 ARG 47 39 39 ARG ARG A . n A 1 48 ASP 48 40 40 ASP ASP A . n A 1 49 PHE 49 41 41 PHE PHE A . n A 1 50 THR 50 42 42 THR THR A . n A 1 51 PHE 51 43 43 PHE PHE A . n A 1 52 ASP 52 44 44 ASP ASP A . n A 1 53 LYS 53 45 45 LYS LYS A . n A 1 54 HIS 54 46 46 HIS HIS A . n A 1 55 LYS 55 47 47 LYS LYS A . n A 1 56 THR 56 48 48 THR THR A . n A 1 57 VAL 57 49 49 VAL VAL A . n A 1 58 ASP 58 50 50 ASP ASP A . n A 1 59 ASP 59 51 51 ASP ASP A . n A 1 60 ARG 60 52 52 ARG ARG A . n A 1 61 PRO 61 53 53 PRO PRO A . n A 1 62 TYR 62 54 54 TYR TYR A . n A 1 63 GLY 63 55 55 GLY GLY A . n A 1 64 GLY 64 56 56 GLY GLY A . n A 1 65 GLY 65 57 57 GLY GLY A . n A 1 66 PRO 66 58 58 PRO PRO A . n A 1 67 GLY 67 59 59 GLY GLY A . n A 1 68 MET 68 60 60 MET MET A . n A 1 69 LEU 69 61 61 LEU LEU A . n A 1 70 MET 70 62 62 MET MET A . n A 1 71 MET 71 63 63 MET MET A . n A 1 72 VAL 72 64 64 VAL VAL A . n A 1 73 GLN 73 65 65 GLN GLN A . n A 1 74 PRO 74 66 66 PRO PRO A . n A 1 75 LEU 75 67 67 LEU LEU A . n A 1 76 ARG 76 68 68 ARG ARG A . n A 1 77 ASP 77 69 69 ASP ASP A . n A 1 78 ALA 78 70 70 ALA ALA A . n A 1 79 ILE 79 71 71 ILE ILE A . n A 1 80 HIS 80 72 72 HIS HIS A . n A 1 81 THR 81 73 73 THR THR A . n A 1 82 ALA 82 74 74 ALA ALA A . n A 1 83 LYS 83 75 75 LYS LYS A . n A 1 84 ALA 84 76 76 ALA ALA A . n A 1 85 ALA 85 77 77 ALA ALA A . n A 1 86 ALA 86 78 78 ALA ALA A . n A 1 87 GLY 87 79 79 GLY GLY A . n A 1 88 GLU 88 80 80 GLU GLU A . n A 1 89 GLY 89 81 81 GLY GLY A . n A 1 90 ALA 90 82 82 ALA ALA A . n A 1 91 LYS 91 83 83 LYS LYS A . n A 1 92 VAL 92 84 84 VAL VAL A . n A 1 93 ILE 93 85 85 ILE ILE A . n A 1 94 TYR 94 86 86 TYR TYR A . n A 1 95 LEU 95 87 87 LEU LEU A . n A 1 96 SER 96 88 88 SER SER A . n A 1 97 PRO 97 89 89 PRO PRO A . n A 1 98 GLN 98 90 90 GLN GLN A . n A 1 99 GLY 99 91 91 GLY GLY A . n A 1 100 ARG 100 92 92 ARG ARG A . n A 1 101 LYS 101 93 93 LYS LYS A . n A 1 102 LEU 102 94 94 LEU LEU A . n A 1 103 ASP 103 95 95 ASP ASP A . n A 1 104 GLN 104 96 96 GLN GLN A . n A 1 105 GLY 105 97 97 GLY GLY A . n A 1 106 GLY 106 98 98 GLY GLY A . n A 1 107 VAL 107 99 99 VAL VAL A . n A 1 108 THR 108 100 100 THR THR A . n A 1 109 GLU 109 101 101 GLU GLU A . n A 1 110 LEU 110 102 102 LEU LEU A . n A 1 111 ALA 111 103 103 ALA ALA A . n A 1 112 GLN 112 104 104 GLN GLN A . n A 1 113 ASN 113 105 105 ASN ASN A . n A 1 114 GLN 114 106 106 GLN GLN A . n A 1 115 LYS 115 107 107 LYS LYS A . n A 1 116 LEU 116 108 108 LEU LEU A . n A 1 117 ILE 117 109 109 ILE ILE A . n A 1 118 LEU 118 110 110 LEU LEU A . n A 1 119 VAL 119 111 111 VAL VAL A . n A 1 120 CYS 120 112 112 CYS CYS A . n A 1 121 GLY 121 113 113 GLY GLY A . n A 1 122 ARG 122 114 114 ARG ARG A . n A 1 123 TYR 123 115 115 TYR TYR A . n A 1 124 GLU 124 116 116 GLU GLU A . n A 1 125 GLY 125 117 117 GLY GLY A . n A 1 126 ILE 126 118 118 ILE ILE A . n A 1 127 ASP 127 119 119 ASP ASP A . n A 1 128 GLU 128 120 120 GLU GLU A . n A 1 129 ARG 129 121 121 ARG ARG A . n A 1 130 LEU 130 122 122 LEU LEU A . n A 1 131 ILE 131 123 123 ILE ILE A . n A 1 132 GLN 132 124 124 GLN GLN A . n A 1 133 THR 133 125 125 THR THR A . n A 1 134 GLU 134 126 126 GLU GLU A . n A 1 135 ILE 135 127 127 ILE ILE A . n A 1 136 ASP 136 128 128 ASP ASP A . n A 1 137 GLU 137 129 129 GLU GLU A . n A 1 138 GLU 138 130 130 GLU GLU A . n A 1 139 TRP 139 131 131 TRP TRP A . n A 1 140 SER 140 132 132 SER SER A . n A 1 141 ILE 141 133 133 ILE ILE A . n A 1 142 GLY 142 134 134 GLY GLY A . n A 1 143 ASP 143 135 135 ASP ASP A . n A 1 144 TYR 144 136 136 TYR TYR A . n A 1 145 VAL 145 137 137 VAL VAL A . n A 1 146 LEU 146 138 138 LEU LEU A . n A 1 147 THR 147 139 139 THR THR A . n A 1 148 GLY 148 140 140 GLY GLY A . n A 1 149 GLY 149 141 141 GLY GLY A . n A 1 150 GLU 150 142 142 GLU GLU A . n A 1 151 LEU 151 143 143 LEU LEU A . n A 1 152 PRO 152 144 144 PRO PRO A . n A 1 153 ALA 153 145 145 ALA ALA A . n A 1 154 MET 154 146 146 MET MET A . n A 1 155 THR 155 147 147 THR THR A . n A 1 156 LEU 156 148 148 LEU LEU A . n A 1 157 ILE 157 149 149 ILE ILE A . n A 1 158 ASP 158 150 150 ASP ASP A . n A 1 159 ALA 159 151 151 ALA ALA A . n A 1 160 VAL 160 152 152 VAL VAL A . n A 1 161 ALA 161 153 153 ALA ALA A . n A 1 162 ARG 162 154 154 ARG ARG A . n A 1 163 PHE 163 155 155 PHE PHE A . n A 1 164 ILE 164 156 156 ILE ILE A . n A 1 165 PRO 165 157 157 PRO PRO A . n A 1 166 GLY 166 158 158 GLY GLY A . n A 1 167 VAL 167 159 159 VAL VAL A . n A 1 168 LEU 168 160 160 LEU LEU A . n A 1 169 GLY 169 161 ? ? ? A . n A 1 170 LYS 170 162 ? ? ? A . n A 1 171 GLN 171 163 ? ? ? A . n A 1 172 ALA 172 164 ? ? ? A . n A 1 173 SER 173 165 ? ? ? A . n A 1 174 ALA 174 166 ? ? ? A . n A 1 175 GLU 175 167 ? ? ? A . n A 1 176 GLU 176 168 ? ? ? A . n A 1 177 ASP 177 169 ? ? ? A . n A 1 178 SER 178 170 ? ? ? A . n A 1 179 PHE 179 171 ? ? ? A . n A 1 180 ALA 180 172 ? ? ? A . n A 1 181 ASP 181 173 173 ASP ASP A . n A 1 182 GLY 182 174 174 GLY GLY A . n A 1 183 LEU 183 175 175 LEU LEU A . n A 1 184 LEU 184 176 176 LEU LEU A . n A 1 185 ASP 185 177 177 ASP ASP A . n A 1 186 CYS 186 178 178 CYS CYS A . n A 1 187 PRO 187 179 179 PRO PRO A . n A 1 188 HIS 188 180 180 HIS HIS A . n A 1 189 TYR 189 181 181 TYR TYR A . n A 1 190 THR 190 182 182 THR THR A . n A 1 191 ARG 191 183 183 ARG ARG A . n A 1 192 PRO 192 184 184 PRO PRO A . n A 1 193 GLU 193 185 185 GLU GLU A . n A 1 194 VAL 194 186 186 VAL VAL A . n A 1 195 LEU 195 187 187 LEU LEU A . n A 1 196 GLU 196 188 188 GLU GLU A . n A 1 197 GLY 197 189 189 GLY GLY A . n A 1 198 LEU 198 190 190 LEU LEU A . n A 1 199 THR 199 191 191 THR THR A . n A 1 200 VAL 200 192 192 VAL VAL A . n A 1 201 PRO 201 193 193 PRO PRO A . n A 1 202 PRO 202 194 194 PRO PRO A . n A 1 203 VAL 203 195 195 VAL VAL A . n A 1 204 LEU 204 196 196 LEU LEU A . n A 1 205 MET 205 197 197 MET MET A . n A 1 206 SER 206 198 198 SER SER A . n A 1 207 GLY 207 199 199 GLY GLY A . n A 1 208 HIS 208 200 200 HIS HIS A . n A 1 209 HIS 209 201 201 HIS HIS A . n A 1 210 GLU 210 202 202 GLU GLU A . n A 1 211 GLU 211 203 203 GLU GLU A . n A 1 212 ILE 212 204 204 ILE ILE A . n A 1 213 ARG 213 205 205 ARG ARG A . n A 1 214 LYS 214 206 206 LYS LYS A . n A 1 215 TRP 215 207 207 TRP TRP A . n A 1 216 ARG 216 208 208 ARG ARG A . n A 1 217 LEU 217 209 209 LEU LEU A . n A 1 218 LYS 218 210 210 LYS LYS A . n A 1 219 GLN 219 211 211 GLN GLN A . n A 1 220 SER 220 212 212 SER SER A . n A 1 221 LEU 221 213 213 LEU LEU A . n A 1 222 GLN 222 214 214 GLN GLN A . n A 1 223 ARG 223 215 215 ARG ARG A . n A 1 224 THR 224 216 216 THR THR A . n A 1 225 TRP 225 217 217 TRP TRP A . n A 1 226 LEU 226 218 218 LEU LEU A . n A 1 227 ARG 227 219 219 ARG ARG A . n A 1 228 ARG 228 220 220 ARG ARG A . n A 1 229 PRO 229 221 221 PRO PRO A . n A 1 230 GLU 230 222 222 GLU GLU A . n A 1 231 LEU 231 223 223 LEU LEU A . n A 1 232 LEU 232 224 224 LEU LEU A . n A 1 233 GLU 233 225 225 GLU GLU A . n A 1 234 GLY 234 226 226 GLY GLY A . n A 1 235 LEU 235 227 227 LEU LEU A . n A 1 236 ALA 236 228 228 ALA ALA A . n A 1 237 LEU 237 229 229 LEU LEU A . n A 1 238 THR 238 230 230 THR THR A . n A 1 239 ASP 239 231 231 ASP ASP A . n A 1 240 GLU 240 232 232 GLU GLU A . n A 1 241 GLN 241 233 233 GLN GLN A . n A 1 242 ARG 242 234 234 ARG ARG A . n A 1 243 LYS 243 235 235 LYS LYS A . n A 1 244 LEU 244 236 236 LEU LEU A . n A 1 245 LEU 245 237 237 LEU LEU A . n A 1 246 LYS 246 238 238 LYS LYS A . n A 1 247 GLU 247 239 239 GLU GLU A . n A 1 248 ALA 248 240 240 ALA ALA A . n A 1 249 GLN 249 241 241 GLN GLN A . n A 1 250 ALA 250 242 242 ALA ALA A . n A 1 251 GLU 251 243 243 GLU GLU A . n A 1 252 HIS 252 244 244 HIS HIS A . n A 1 253 ASN 253 245 245 ASN ASN A . n A 1 254 SER 254 246 246 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4H1 1 301 1 4H1 UNL A . C 3 HOH 1 401 60 HOH HOH A . C 3 HOH 2 402 99 HOH HOH A . C 3 HOH 3 403 120 HOH HOH A . C 3 HOH 4 404 144 HOH HOH A . C 3 HOH 5 405 67 HOH HOH A . C 3 HOH 6 406 32 HOH HOH A . C 3 HOH 7 407 108 HOH HOH A . C 3 HOH 8 408 54 HOH HOH A . C 3 HOH 9 409 164 HOH HOH A . C 3 HOH 10 410 43 HOH HOH A . C 3 HOH 11 411 187 HOH HOH A . C 3 HOH 12 412 124 HOH HOH A . C 3 HOH 13 413 173 HOH HOH A . C 3 HOH 14 414 58 HOH HOH A . C 3 HOH 15 415 111 HOH HOH A . C 3 HOH 16 416 97 HOH HOH A . C 3 HOH 17 417 116 HOH HOH A . C 3 HOH 18 418 7 HOH HOH A . C 3 HOH 19 419 77 HOH HOH A . C 3 HOH 20 420 23 HOH HOH A . C 3 HOH 21 421 5 HOH HOH A . C 3 HOH 22 422 28 HOH HOH A . C 3 HOH 23 423 125 HOH HOH A . C 3 HOH 24 424 21 HOH HOH A . C 3 HOH 25 425 2 HOH HOH A . C 3 HOH 26 426 133 HOH HOH A . C 3 HOH 27 427 94 HOH HOH A . C 3 HOH 28 428 121 HOH HOH A . C 3 HOH 29 429 90 HOH HOH A . C 3 HOH 30 430 95 HOH HOH A . C 3 HOH 31 431 37 HOH HOH A . C 3 HOH 32 432 56 HOH HOH A . C 3 HOH 33 433 46 HOH HOH A . C 3 HOH 34 434 151 HOH HOH A . C 3 HOH 35 435 117 HOH HOH A . C 3 HOH 36 436 183 HOH HOH A . C 3 HOH 37 437 59 HOH HOH A . C 3 HOH 38 438 74 HOH HOH A . C 3 HOH 39 439 14 HOH HOH A . C 3 HOH 40 440 68 HOH HOH A . C 3 HOH 41 441 174 HOH HOH A . C 3 HOH 42 442 39 HOH HOH A . C 3 HOH 43 443 103 HOH HOH A . C 3 HOH 44 444 92 HOH HOH A . C 3 HOH 45 445 16 HOH HOH A . C 3 HOH 46 446 71 HOH HOH A . C 3 HOH 47 447 142 HOH HOH A . C 3 HOH 48 448 72 HOH HOH A . C 3 HOH 49 449 41 HOH HOH A . C 3 HOH 50 450 29 HOH HOH A . C 3 HOH 51 451 48 HOH HOH A . C 3 HOH 52 452 138 HOH HOH A . C 3 HOH 53 453 24 HOH HOH A . C 3 HOH 54 454 130 HOH HOH A . C 3 HOH 55 455 4 HOH HOH A . C 3 HOH 56 456 93 HOH HOH A . C 3 HOH 57 457 154 HOH HOH A . C 3 HOH 58 458 63 HOH HOH A . C 3 HOH 59 459 47 HOH HOH A . C 3 HOH 60 460 18 HOH HOH A . C 3 HOH 61 461 11 HOH HOH A . C 3 HOH 62 462 123 HOH HOH A . C 3 HOH 63 463 10 HOH HOH A . C 3 HOH 64 464 118 HOH HOH A . C 3 HOH 65 465 98 HOH HOH A . C 3 HOH 66 466 122 HOH HOH A . C 3 HOH 67 467 69 HOH HOH A . C 3 HOH 68 468 66 HOH HOH A . C 3 HOH 69 469 146 HOH HOH A . C 3 HOH 70 470 79 HOH HOH A . C 3 HOH 71 471 17 HOH HOH A . C 3 HOH 72 472 83 HOH HOH A . C 3 HOH 73 473 184 HOH HOH A . C 3 HOH 74 474 171 HOH HOH A . C 3 HOH 75 475 35 HOH HOH A . C 3 HOH 76 476 160 HOH HOH A . C 3 HOH 77 477 167 HOH HOH A . C 3 HOH 78 478 181 HOH HOH A . C 3 HOH 79 479 104 HOH HOH A . C 3 HOH 80 480 126 HOH HOH A . C 3 HOH 81 481 33 HOH HOH A . C 3 HOH 82 482 147 HOH HOH A . C 3 HOH 83 483 190 HOH HOH A . C 3 HOH 84 484 182 HOH HOH A . C 3 HOH 85 485 189 HOH HOH A . C 3 HOH 86 486 115 HOH HOH A . C 3 HOH 87 487 84 HOH HOH A . C 3 HOH 88 488 85 HOH HOH A . C 3 HOH 89 489 175 HOH HOH A . C 3 HOH 90 490 80 HOH HOH A . C 3 HOH 91 491 136 HOH HOH A . C 3 HOH 92 492 113 HOH HOH A . C 3 HOH 93 493 82 HOH HOH A . C 3 HOH 94 494 65 HOH HOH A . C 3 HOH 95 495 34 HOH HOH A . C 3 HOH 96 496 49 HOH HOH A . C 3 HOH 97 497 172 HOH HOH A . C 3 HOH 98 498 119 HOH HOH A . C 3 HOH 99 499 1 HOH HOH A . C 3 HOH 100 500 3 HOH HOH A . C 3 HOH 101 501 6 HOH HOH A . C 3 HOH 102 502 8 HOH HOH A . C 3 HOH 103 503 9 HOH HOH A . C 3 HOH 104 504 12 HOH HOH A . C 3 HOH 105 505 13 HOH HOH A . C 3 HOH 106 506 15 HOH HOH A . C 3 HOH 107 507 19 HOH HOH A . C 3 HOH 108 508 20 HOH HOH A . C 3 HOH 109 509 25 HOH HOH A . C 3 HOH 110 510 26 HOH HOH A . C 3 HOH 111 511 27 HOH HOH A . C 3 HOH 112 512 30 HOH HOH A . C 3 HOH 113 513 31 HOH HOH A . C 3 HOH 114 514 36 HOH HOH A . C 3 HOH 115 515 40 HOH HOH A . C 3 HOH 116 516 42 HOH HOH A . C 3 HOH 117 517 44 HOH HOH A . C 3 HOH 118 518 45 HOH HOH A . C 3 HOH 119 519 50 HOH HOH A . C 3 HOH 120 520 51 HOH HOH A . C 3 HOH 121 521 52 HOH HOH A . C 3 HOH 122 522 53 HOH HOH A . C 3 HOH 123 523 55 HOH HOH A . C 3 HOH 124 524 61 HOH HOH A . C 3 HOH 125 525 64 HOH HOH A . C 3 HOH 126 526 70 HOH HOH A . C 3 HOH 127 527 73 HOH HOH A . C 3 HOH 128 528 76 HOH HOH A . C 3 HOH 129 529 78 HOH HOH A . C 3 HOH 130 530 81 HOH HOH A . C 3 HOH 131 531 86 HOH HOH A . C 3 HOH 132 532 87 HOH HOH A . C 3 HOH 133 533 88 HOH HOH A . C 3 HOH 134 534 89 HOH HOH A . C 3 HOH 135 535 91 HOH HOH A . C 3 HOH 136 536 96 HOH HOH A . C 3 HOH 137 537 100 HOH HOH A . C 3 HOH 138 538 102 HOH HOH A . C 3 HOH 139 539 105 HOH HOH A . C 3 HOH 140 540 106 HOH HOH A . C 3 HOH 141 541 107 HOH HOH A . C 3 HOH 142 542 109 HOH HOH A . C 3 HOH 143 543 110 HOH HOH A . C 3 HOH 144 544 112 HOH HOH A . C 3 HOH 145 545 127 HOH HOH A . C 3 HOH 146 546 129 HOH HOH A . C 3 HOH 147 547 131 HOH HOH A . C 3 HOH 148 548 132 HOH HOH A . C 3 HOH 149 549 134 HOH HOH A . C 3 HOH 150 550 135 HOH HOH A . C 3 HOH 151 551 137 HOH HOH A . C 3 HOH 152 552 139 HOH HOH A . C 3 HOH 153 553 140 HOH HOH A . C 3 HOH 154 554 143 HOH HOH A . C 3 HOH 155 555 145 HOH HOH A . C 3 HOH 156 556 149 HOH HOH A . C 3 HOH 157 557 150 HOH HOH A . C 3 HOH 158 558 152 HOH HOH A . C 3 HOH 159 559 155 HOH HOH A . C 3 HOH 160 560 156 HOH HOH A . C 3 HOH 161 561 158 HOH HOH A . C 3 HOH 162 562 159 HOH HOH A . C 3 HOH 163 563 161 HOH HOH A . C 3 HOH 164 564 163 HOH HOH A . C 3 HOH 165 565 165 HOH HOH A . C 3 HOH 166 566 166 HOH HOH A . C 3 HOH 167 567 169 HOH HOH A . C 3 HOH 168 568 170 HOH HOH A . C 3 HOH 169 569 176 HOH HOH A . C 3 HOH 170 570 177 HOH HOH A . C 3 HOH 171 571 179 HOH HOH A . C 3 HOH 172 572 180 HOH HOH A . C 3 HOH 173 573 185 HOH HOH A . C 3 HOH 174 574 186 HOH HOH A . C 3 HOH 175 575 188 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6750 ? 1 MORE -25 ? 1 'SSA (A^2)' 21810 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 434 ? C HOH . 2 1 A HOH 483 ? C HOH . 3 1 A HOH 494 ? C HOH . 4 1 A HOH 496 ? C HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-03-16 2 'Structure model' 1 1 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id TYR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 115 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 59.19 _pdbx_validate_torsion.psi -139.89 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id ASP _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 135 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -10.54 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 11 ? CD ? A GLU 19 CD 2 1 Y 1 A GLU 11 ? OE1 ? A GLU 19 OE1 3 1 Y 1 A GLU 11 ? OE2 ? A GLU 19 OE2 4 1 Y 1 A LYS 32 ? CE ? A LYS 40 CE 5 1 Y 1 A LYS 32 ? NZ ? A LYS 40 NZ 6 1 Y 1 A LYS 45 ? CD ? A LYS 53 CD 7 1 Y 1 A LYS 45 ? CE ? A LYS 53 CE 8 1 Y 1 A LYS 45 ? NZ ? A LYS 53 NZ 9 1 Y 1 A GLU 80 ? CG ? A GLU 88 CG 10 1 Y 1 A GLU 80 ? CD ? A GLU 88 CD 11 1 Y 1 A GLU 80 ? OE1 ? A GLU 88 OE1 12 1 Y 1 A GLU 80 ? OE2 ? A GLU 88 OE2 13 1 Y 1 A GLN 124 ? CG ? A GLN 132 CG 14 1 Y 1 A GLN 124 ? CD ? A GLN 132 CD 15 1 Y 1 A GLN 124 ? OE1 ? A GLN 132 OE1 16 1 Y 1 A GLN 124 ? NE2 ? A GLN 132 NE2 17 1 Y 1 A GLU 203 ? CG ? A GLU 211 CG 18 1 Y 1 A GLU 203 ? CD ? A GLU 211 CD 19 1 Y 1 A GLU 203 ? OE1 ? A GLU 211 OE1 20 1 Y 1 A GLU 203 ? OE2 ? A GLU 211 OE2 21 1 Y 1 A LYS 206 ? CE ? A LYS 214 CE 22 1 Y 1 A LYS 206 ? NZ ? A LYS 214 NZ 23 1 Y 1 A LYS 238 ? CD ? A LYS 246 CD 24 1 Y 1 A LYS 238 ? CE ? A LYS 246 CE 25 1 Y 1 A LYS 238 ? NZ ? A LYS 246 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 161 ? A GLY 169 2 1 Y 1 A LYS 162 ? A LYS 170 3 1 Y 1 A GLN 163 ? A GLN 171 4 1 Y 1 A ALA 164 ? A ALA 172 5 1 Y 1 A SER 165 ? A SER 173 6 1 Y 1 A ALA 166 ? A ALA 174 7 1 Y 1 A GLU 167 ? A GLU 175 8 1 Y 1 A GLU 168 ? A GLU 176 9 1 Y 1 A ASP 169 ? A ASP 177 10 1 Y 1 A SER 170 ? A SER 178 11 1 Y 1 A PHE 171 ? A PHE 179 12 1 Y 1 A ALA 172 ? A ALA 180 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 4H1 C12 C Y N 1 4H1 C11 C Y N 2 4H1 C14 C Y N 3 4H1 C13 C Y N 4 4H1 C10 C Y N 5 4H1 C16 C N N 6 4H1 C5 C N N 7 4H1 C4 C N N 8 4H1 C6 C N N 9 4H1 C19 C N N 10 4H1 C3 C N S 11 4H1 C7 C N R 12 4H1 C2 C N N 13 4H1 C8 C N N 14 4H1 N15 N Y N 15 4H1 N17 N N N 16 4H1 N1 N N N 17 4H1 N9 N N N 18 4H1 O18 O N N 19 4H1 H1 H N N 20 4H1 H2 H N N 21 4H1 H3 H N N 22 4H1 H4 H N N 23 4H1 H5 H N N 24 4H1 H6 H N N 25 4H1 H7 H N N 26 4H1 H8 H N N 27 4H1 H9 H N N 28 4H1 H10 H N N 29 4H1 H11 H N N 30 4H1 H12 H N N 31 4H1 H13 H N N 32 4H1 H14 H N N 33 4H1 H15 H N N 34 4H1 H16 H N N 35 4H1 H17 H N N 36 4H1 H18 H N N 37 4H1 H19 H N N 38 4H1 H20 H N N 39 4H1 H21 H N N 40 4H1 H23 H N N 41 ALA N N N N 42 ALA CA C N S 43 ALA C C N N 44 ALA O O N N 45 ALA CB C N N 46 ALA OXT O N N 47 ALA H H N N 48 ALA H2 H N N 49 ALA HA H N N 50 ALA HB1 H N N 51 ALA HB2 H N N 52 ALA HB3 H N N 53 ALA HXT H N N 54 ARG N N N N 55 ARG CA C N S 56 ARG C C N N 57 ARG O O N N 58 ARG CB C N N 59 ARG CG C N N 60 ARG CD C N N 61 ARG NE N N N 62 ARG CZ C N N 63 ARG NH1 N N N 64 ARG NH2 N N N 65 ARG OXT O N N 66 ARG H H N N 67 ARG H2 H N N 68 ARG HA H N N 69 ARG HB2 H N N 70 ARG HB3 H N N 71 ARG HG2 H N N 72 ARG HG3 H N N 73 ARG HD2 H N N 74 ARG HD3 H N N 75 ARG HE H N N 76 ARG HH11 H N N 77 ARG HH12 H N N 78 ARG HH21 H N N 79 ARG HH22 H N N 80 ARG HXT H N N 81 ASN N N N N 82 ASN CA C N S 83 ASN C C N N 84 ASN O O N N 85 ASN CB C N N 86 ASN CG C N N 87 ASN OD1 O N N 88 ASN ND2 N N N 89 ASN OXT O N N 90 ASN H H N N 91 ASN H2 H N N 92 ASN HA H N N 93 ASN HB2 H N N 94 ASN HB3 H N N 95 ASN HD21 H N N 96 ASN HD22 H N N 97 ASN HXT H N N 98 ASP N N N N 99 ASP CA C N S 100 ASP C C N N 101 ASP O O N N 102 ASP CB C N N 103 ASP CG C N N 104 ASP OD1 O N N 105 ASP OD2 O N N 106 ASP OXT O N N 107 ASP H H N N 108 ASP H2 H N N 109 ASP HA H N N 110 ASP HB2 H N N 111 ASP HB3 H N N 112 ASP HD2 H N N 113 ASP HXT H N N 114 CYS N N N N 115 CYS CA C N R 116 CYS C C N N 117 CYS O O N N 118 CYS CB C N N 119 CYS SG S N N 120 CYS OXT O N N 121 CYS H H N N 122 CYS H2 H N N 123 CYS HA H N N 124 CYS HB2 H N N 125 CYS HB3 H N N 126 CYS HG H N N 127 CYS HXT H N N 128 GLN N N N N 129 GLN CA C N S 130 GLN C C N N 131 GLN O O N N 132 GLN CB C N N 133 GLN CG C N N 134 GLN CD C N N 135 GLN OE1 O N N 136 GLN NE2 N N N 137 GLN OXT O N N 138 GLN H H N N 139 GLN H2 H N N 140 GLN HA H N N 141 GLN HB2 H N N 142 GLN HB3 H N N 143 GLN HG2 H N N 144 GLN HG3 H N N 145 GLN HE21 H N N 146 GLN HE22 H N N 147 GLN HXT H N N 148 GLU N N N N 149 GLU CA C N S 150 GLU C C N N 151 GLU O O N N 152 GLU CB C N N 153 GLU CG C N N 154 GLU CD C N N 155 GLU OE1 O N N 156 GLU OE2 O N N 157 GLU OXT O N N 158 GLU H H N N 159 GLU H2 H N N 160 GLU HA H N N 161 GLU HB2 H N N 162 GLU HB3 H N N 163 GLU HG2 H N N 164 GLU HG3 H N N 165 GLU HE2 H N N 166 GLU HXT H N N 167 GLY N N N N 168 GLY CA C N N 169 GLY C C N N 170 GLY O O N N 171 GLY OXT O N N 172 GLY H H N N 173 GLY H2 H N N 174 GLY HA2 H N N 175 GLY HA3 H N N 176 GLY HXT H N N 177 HIS N N N N 178 HIS CA C N S 179 HIS C C N N 180 HIS O O N N 181 HIS CB C N N 182 HIS CG C Y N 183 HIS ND1 N Y N 184 HIS CD2 C Y N 185 HIS CE1 C Y N 186 HIS NE2 N Y N 187 HIS OXT O N N 188 HIS H H N N 189 HIS H2 H N N 190 HIS HA H N N 191 HIS HB2 H N N 192 HIS HB3 H N N 193 HIS HD1 H N N 194 HIS HD2 H N N 195 HIS HE1 H N N 196 HIS HE2 H N N 197 HIS HXT H N N 198 HOH O O N N 199 HOH H1 H N N 200 HOH H2 H N N 201 ILE N N N N 202 ILE CA C N S 203 ILE C C N N 204 ILE O O N N 205 ILE CB C N S 206 ILE CG1 C N N 207 ILE CG2 C N N 208 ILE CD1 C N N 209 ILE OXT O N N 210 ILE H H N N 211 ILE H2 H N N 212 ILE HA H N N 213 ILE HB H N N 214 ILE HG12 H N N 215 ILE HG13 H N N 216 ILE HG21 H N N 217 ILE HG22 H N N 218 ILE HG23 H N N 219 ILE HD11 H N N 220 ILE HD12 H N N 221 ILE HD13 H N N 222 ILE HXT H N N 223 LEU N N N N 224 LEU CA C N S 225 LEU C C N N 226 LEU O O N N 227 LEU CB C N N 228 LEU CG C N N 229 LEU CD1 C N N 230 LEU CD2 C N N 231 LEU OXT O N N 232 LEU H H N N 233 LEU H2 H N N 234 LEU HA H N N 235 LEU HB2 H N N 236 LEU HB3 H N N 237 LEU HG H N N 238 LEU HD11 H N N 239 LEU HD12 H N N 240 LEU HD13 H N N 241 LEU HD21 H N N 242 LEU HD22 H N N 243 LEU HD23 H N N 244 LEU HXT H N N 245 LYS N N N N 246 LYS CA C N S 247 LYS C C N N 248 LYS O O N N 249 LYS CB C N N 250 LYS CG C N N 251 LYS CD C N N 252 LYS CE C N N 253 LYS NZ N N N 254 LYS OXT O N N 255 LYS H H N N 256 LYS H2 H N N 257 LYS HA H N N 258 LYS HB2 H N N 259 LYS HB3 H N N 260 LYS HG2 H N N 261 LYS HG3 H N N 262 LYS HD2 H N N 263 LYS HD3 H N N 264 LYS HE2 H N N 265 LYS HE3 H N N 266 LYS HZ1 H N N 267 LYS HZ2 H N N 268 LYS HZ3 H N N 269 LYS HXT H N N 270 MET N N N N 271 MET CA C N S 272 MET C C N N 273 MET O O N N 274 MET CB C N N 275 MET CG C N N 276 MET SD S N N 277 MET CE C N N 278 MET OXT O N N 279 MET H H N N 280 MET H2 H N N 281 MET HA H N N 282 MET HB2 H N N 283 MET HB3 H N N 284 MET HG2 H N N 285 MET HG3 H N N 286 MET HE1 H N N 287 MET HE2 H N N 288 MET HE3 H N N 289 MET HXT H N N 290 PHE N N N N 291 PHE CA C N S 292 PHE C C N N 293 PHE O O N N 294 PHE CB C N N 295 PHE CG C Y N 296 PHE CD1 C Y N 297 PHE CD2 C Y N 298 PHE CE1 C Y N 299 PHE CE2 C Y N 300 PHE CZ C Y N 301 PHE OXT O N N 302 PHE H H N N 303 PHE H2 H N N 304 PHE HA H N N 305 PHE HB2 H N N 306 PHE HB3 H N N 307 PHE HD1 H N N 308 PHE HD2 H N N 309 PHE HE1 H N N 310 PHE HE2 H N N 311 PHE HZ H N N 312 PHE HXT H N N 313 PRO N N N N 314 PRO CA C N S 315 PRO C C N N 316 PRO O O N N 317 PRO CB C N N 318 PRO CG C N N 319 PRO CD C N N 320 PRO OXT O N N 321 PRO H H N N 322 PRO HA H N N 323 PRO HB2 H N N 324 PRO HB3 H N N 325 PRO HG2 H N N 326 PRO HG3 H N N 327 PRO HD2 H N N 328 PRO HD3 H N N 329 PRO HXT H N N 330 SER N N N N 331 SER CA C N S 332 SER C C N N 333 SER O O N N 334 SER CB C N N 335 SER OG O N N 336 SER OXT O N N 337 SER H H N N 338 SER H2 H N N 339 SER HA H N N 340 SER HB2 H N N 341 SER HB3 H N N 342 SER HG H N N 343 SER HXT H N N 344 THR N N N N 345 THR CA C N S 346 THR C C N N 347 THR O O N N 348 THR CB C N R 349 THR OG1 O N N 350 THR CG2 C N N 351 THR OXT O N N 352 THR H H N N 353 THR H2 H N N 354 THR HA H N N 355 THR HB H N N 356 THR HG1 H N N 357 THR HG21 H N N 358 THR HG22 H N N 359 THR HG23 H N N 360 THR HXT H N N 361 TRP N N N N 362 TRP CA C N S 363 TRP C C N N 364 TRP O O N N 365 TRP CB C N N 366 TRP CG C Y N 367 TRP CD1 C Y N 368 TRP CD2 C Y N 369 TRP NE1 N Y N 370 TRP CE2 C Y N 371 TRP CE3 C Y N 372 TRP CZ2 C Y N 373 TRP CZ3 C Y N 374 TRP CH2 C Y N 375 TRP OXT O N N 376 TRP H H N N 377 TRP H2 H N N 378 TRP HA H N N 379 TRP HB2 H N N 380 TRP HB3 H N N 381 TRP HD1 H N N 382 TRP HE1 H N N 383 TRP HE3 H N N 384 TRP HZ2 H N N 385 TRP HZ3 H N N 386 TRP HH2 H N N 387 TRP HXT H N N 388 TYR N N N N 389 TYR CA C N S 390 TYR C C N N 391 TYR O O N N 392 TYR CB C N N 393 TYR CG C Y N 394 TYR CD1 C Y N 395 TYR CD2 C Y N 396 TYR CE1 C Y N 397 TYR CE2 C Y N 398 TYR CZ C Y N 399 TYR OH O N N 400 TYR OXT O N N 401 TYR H H N N 402 TYR H2 H N N 403 TYR HA H N N 404 TYR HB2 H N N 405 TYR HB3 H N N 406 TYR HD1 H N N 407 TYR HD2 H N N 408 TYR HE1 H N N 409 TYR HE2 H N N 410 TYR HH H N N 411 TYR HXT H N N 412 VAL N N N N 413 VAL CA C N S 414 VAL C C N N 415 VAL O O N N 416 VAL CB C N N 417 VAL CG1 C N N 418 VAL CG2 C N N 419 VAL OXT O N N 420 VAL H H N N 421 VAL H2 H N N 422 VAL HA H N N 423 VAL HB H N N 424 VAL HG11 H N N 425 VAL HG12 H N N 426 VAL HG13 H N N 427 VAL HG21 H N N 428 VAL HG22 H N N 429 VAL HG23 H N N 430 VAL HXT H N N 431 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4H1 C5 C4 sing N N 1 4H1 C5 C6 sing N N 2 4H1 C4 C3 sing N N 3 4H1 C6 C7 sing N N 4 4H1 N1 C2 sing N N 5 4H1 C3 C2 sing N N 6 4H1 C3 C19 sing N N 7 4H1 C7 C19 sing N N 8 4H1 C7 C8 sing N N 9 4H1 C8 N9 sing N N 10 4H1 N9 C10 sing N N 11 4H1 C11 C10 doub Y N 12 4H1 C11 C12 sing Y N 13 4H1 C10 N15 sing Y N 14 4H1 C12 C13 doub Y N 15 4H1 N15 C14 doub Y N 16 4H1 C13 C14 sing Y N 17 4H1 C13 C16 sing N N 18 4H1 O18 C16 doub N N 19 4H1 C16 N17 sing N N 20 4H1 C12 H1 sing N N 21 4H1 C11 H2 sing N N 22 4H1 C14 H3 sing N N 23 4H1 C5 H4 sing N N 24 4H1 C5 H5 sing N N 25 4H1 C4 H6 sing N N 26 4H1 C4 H7 sing N N 27 4H1 C6 H8 sing N N 28 4H1 C6 H9 sing N N 29 4H1 C19 H10 sing N N 30 4H1 C19 H11 sing N N 31 4H1 C3 H12 sing N N 32 4H1 C7 H13 sing N N 33 4H1 C2 H14 sing N N 34 4H1 C2 H15 sing N N 35 4H1 C8 H16 sing N N 36 4H1 C8 H17 sing N N 37 4H1 N17 H18 sing N N 38 4H1 N17 H19 sing N N 39 4H1 N1 H20 sing N N 40 4H1 N1 H21 sing N N 41 4H1 N9 H23 sing N N 42 ALA N CA sing N N 43 ALA N H sing N N 44 ALA N H2 sing N N 45 ALA CA C sing N N 46 ALA CA CB sing N N 47 ALA CA HA sing N N 48 ALA C O doub N N 49 ALA C OXT sing N N 50 ALA CB HB1 sing N N 51 ALA CB HB2 sing N N 52 ALA CB HB3 sing N N 53 ALA OXT HXT sing N N 54 ARG N CA sing N N 55 ARG N H sing N N 56 ARG N H2 sing N N 57 ARG CA C sing N N 58 ARG CA CB sing N N 59 ARG CA HA sing N N 60 ARG C O doub N N 61 ARG C OXT sing N N 62 ARG CB CG sing N N 63 ARG CB HB2 sing N N 64 ARG CB HB3 sing N N 65 ARG CG CD sing N N 66 ARG CG HG2 sing N N 67 ARG CG HG3 sing N N 68 ARG CD NE sing N N 69 ARG CD HD2 sing N N 70 ARG CD HD3 sing N N 71 ARG NE CZ sing N N 72 ARG NE HE sing N N 73 ARG CZ NH1 sing N N 74 ARG CZ NH2 doub N N 75 ARG NH1 HH11 sing N N 76 ARG NH1 HH12 sing N N 77 ARG NH2 HH21 sing N N 78 ARG NH2 HH22 sing N N 79 ARG OXT HXT sing N N 80 ASN N CA sing N N 81 ASN N H sing N N 82 ASN N H2 sing N N 83 ASN CA C sing N N 84 ASN CA CB sing N N 85 ASN CA HA sing N N 86 ASN C O doub N N 87 ASN C OXT sing N N 88 ASN CB CG sing N N 89 ASN CB HB2 sing N N 90 ASN CB HB3 sing N N 91 ASN CG OD1 doub N N 92 ASN CG ND2 sing N N 93 ASN ND2 HD21 sing N N 94 ASN ND2 HD22 sing N N 95 ASN OXT HXT sing N N 96 ASP N CA sing N N 97 ASP N H sing N N 98 ASP N H2 sing N N 99 ASP CA C sing N N 100 ASP CA CB sing N N 101 ASP CA HA sing N N 102 ASP C O doub N N 103 ASP C OXT sing N N 104 ASP CB CG sing N N 105 ASP CB HB2 sing N N 106 ASP CB HB3 sing N N 107 ASP CG OD1 doub N N 108 ASP CG OD2 sing N N 109 ASP OD2 HD2 sing N N 110 ASP OXT HXT sing N N 111 CYS N CA sing N N 112 CYS N H sing N N 113 CYS N H2 sing N N 114 CYS CA C sing N N 115 CYS CA CB sing N N 116 CYS CA HA sing N N 117 CYS C O doub N N 118 CYS C OXT sing N N 119 CYS CB SG sing N N 120 CYS CB HB2 sing N N 121 CYS CB HB3 sing N N 122 CYS SG HG sing N N 123 CYS OXT HXT sing N N 124 GLN N CA sing N N 125 GLN N H sing N N 126 GLN N H2 sing N N 127 GLN CA C sing N N 128 GLN CA CB sing N N 129 GLN CA HA sing N N 130 GLN C O doub N N 131 GLN C OXT sing N N 132 GLN CB CG sing N N 133 GLN CB HB2 sing N N 134 GLN CB HB3 sing N N 135 GLN CG CD sing N N 136 GLN CG HG2 sing N N 137 GLN CG HG3 sing N N 138 GLN CD OE1 doub N N 139 GLN CD NE2 sing N N 140 GLN NE2 HE21 sing N N 141 GLN NE2 HE22 sing N N 142 GLN OXT HXT sing N N 143 GLU N CA sing N N 144 GLU N H sing N N 145 GLU N H2 sing N N 146 GLU CA C sing N N 147 GLU CA CB sing N N 148 GLU CA HA sing N N 149 GLU C O doub N N 150 GLU C OXT sing N N 151 GLU CB CG sing N N 152 GLU CB HB2 sing N N 153 GLU CB HB3 sing N N 154 GLU CG CD sing N N 155 GLU CG HG2 sing N N 156 GLU CG HG3 sing N N 157 GLU CD OE1 doub N N 158 GLU CD OE2 sing N N 159 GLU OE2 HE2 sing N N 160 GLU OXT HXT sing N N 161 GLY N CA sing N N 162 GLY N H sing N N 163 GLY N H2 sing N N 164 GLY CA C sing N N 165 GLY CA HA2 sing N N 166 GLY CA HA3 sing N N 167 GLY C O doub N N 168 GLY C OXT sing N N 169 GLY OXT HXT sing N N 170 HIS N CA sing N N 171 HIS N H sing N N 172 HIS N H2 sing N N 173 HIS CA C sing N N 174 HIS CA CB sing N N 175 HIS CA HA sing N N 176 HIS C O doub N N 177 HIS C OXT sing N N 178 HIS CB CG sing N N 179 HIS CB HB2 sing N N 180 HIS CB HB3 sing N N 181 HIS CG ND1 sing Y N 182 HIS CG CD2 doub Y N 183 HIS ND1 CE1 doub Y N 184 HIS ND1 HD1 sing N N 185 HIS CD2 NE2 sing Y N 186 HIS CD2 HD2 sing N N 187 HIS CE1 NE2 sing Y N 188 HIS CE1 HE1 sing N N 189 HIS NE2 HE2 sing N N 190 HIS OXT HXT sing N N 191 HOH O H1 sing N N 192 HOH O H2 sing N N 193 ILE N CA sing N N 194 ILE N H sing N N 195 ILE N H2 sing N N 196 ILE CA C sing N N 197 ILE CA CB sing N N 198 ILE CA HA sing N N 199 ILE C O doub N N 200 ILE C OXT sing N N 201 ILE CB CG1 sing N N 202 ILE CB CG2 sing N N 203 ILE CB HB sing N N 204 ILE CG1 CD1 sing N N 205 ILE CG1 HG12 sing N N 206 ILE CG1 HG13 sing N N 207 ILE CG2 HG21 sing N N 208 ILE CG2 HG22 sing N N 209 ILE CG2 HG23 sing N N 210 ILE CD1 HD11 sing N N 211 ILE CD1 HD12 sing N N 212 ILE CD1 HD13 sing N N 213 ILE OXT HXT sing N N 214 LEU N CA sing N N 215 LEU N H sing N N 216 LEU N H2 sing N N 217 LEU CA C sing N N 218 LEU CA CB sing N N 219 LEU CA HA sing N N 220 LEU C O doub N N 221 LEU C OXT sing N N 222 LEU CB CG sing N N 223 LEU CB HB2 sing N N 224 LEU CB HB3 sing N N 225 LEU CG CD1 sing N N 226 LEU CG CD2 sing N N 227 LEU CG HG sing N N 228 LEU CD1 HD11 sing N N 229 LEU CD1 HD12 sing N N 230 LEU CD1 HD13 sing N N 231 LEU CD2 HD21 sing N N 232 LEU CD2 HD22 sing N N 233 LEU CD2 HD23 sing N N 234 LEU OXT HXT sing N N 235 LYS N CA sing N N 236 LYS N H sing N N 237 LYS N H2 sing N N 238 LYS CA C sing N N 239 LYS CA CB sing N N 240 LYS CA HA sing N N 241 LYS C O doub N N 242 LYS C OXT sing N N 243 LYS CB CG sing N N 244 LYS CB HB2 sing N N 245 LYS CB HB3 sing N N 246 LYS CG CD sing N N 247 LYS CG HG2 sing N N 248 LYS CG HG3 sing N N 249 LYS CD CE sing N N 250 LYS CD HD2 sing N N 251 LYS CD HD3 sing N N 252 LYS CE NZ sing N N 253 LYS CE HE2 sing N N 254 LYS CE HE3 sing N N 255 LYS NZ HZ1 sing N N 256 LYS NZ HZ2 sing N N 257 LYS NZ HZ3 sing N N 258 LYS OXT HXT sing N N 259 MET N CA sing N N 260 MET N H sing N N 261 MET N H2 sing N N 262 MET CA C sing N N 263 MET CA CB sing N N 264 MET CA HA sing N N 265 MET C O doub N N 266 MET C OXT sing N N 267 MET CB CG sing N N 268 MET CB HB2 sing N N 269 MET CB HB3 sing N N 270 MET CG SD sing N N 271 MET CG HG2 sing N N 272 MET CG HG3 sing N N 273 MET SD CE sing N N 274 MET CE HE1 sing N N 275 MET CE HE2 sing N N 276 MET CE HE3 sing N N 277 MET OXT HXT sing N N 278 PHE N CA sing N N 279 PHE N H sing N N 280 PHE N H2 sing N N 281 PHE CA C sing N N 282 PHE CA CB sing N N 283 PHE CA HA sing N N 284 PHE C O doub N N 285 PHE C OXT sing N N 286 PHE CB CG sing N N 287 PHE CB HB2 sing N N 288 PHE CB HB3 sing N N 289 PHE CG CD1 doub Y N 290 PHE CG CD2 sing Y N 291 PHE CD1 CE1 sing Y N 292 PHE CD1 HD1 sing N N 293 PHE CD2 CE2 doub Y N 294 PHE CD2 HD2 sing N N 295 PHE CE1 CZ doub Y N 296 PHE CE1 HE1 sing N N 297 PHE CE2 CZ sing Y N 298 PHE CE2 HE2 sing N N 299 PHE CZ HZ sing N N 300 PHE OXT HXT sing N N 301 PRO N CA sing N N 302 PRO N CD sing N N 303 PRO N H sing N N 304 PRO CA C sing N N 305 PRO CA CB sing N N 306 PRO CA HA sing N N 307 PRO C O doub N N 308 PRO C OXT sing N N 309 PRO CB CG sing N N 310 PRO CB HB2 sing N N 311 PRO CB HB3 sing N N 312 PRO CG CD sing N N 313 PRO CG HG2 sing N N 314 PRO CG HG3 sing N N 315 PRO CD HD2 sing N N 316 PRO CD HD3 sing N N 317 PRO OXT HXT sing N N 318 SER N CA sing N N 319 SER N H sing N N 320 SER N H2 sing N N 321 SER CA C sing N N 322 SER CA CB sing N N 323 SER CA HA sing N N 324 SER C O doub N N 325 SER C OXT sing N N 326 SER CB OG sing N N 327 SER CB HB2 sing N N 328 SER CB HB3 sing N N 329 SER OG HG sing N N 330 SER OXT HXT sing N N 331 THR N CA sing N N 332 THR N H sing N N 333 THR N H2 sing N N 334 THR CA C sing N N 335 THR CA CB sing N N 336 THR CA HA sing N N 337 THR C O doub N N 338 THR C OXT sing N N 339 THR CB OG1 sing N N 340 THR CB CG2 sing N N 341 THR CB HB sing N N 342 THR OG1 HG1 sing N N 343 THR CG2 HG21 sing N N 344 THR CG2 HG22 sing N N 345 THR CG2 HG23 sing N N 346 THR OXT HXT sing N N 347 TRP N CA sing N N 348 TRP N H sing N N 349 TRP N H2 sing N N 350 TRP CA C sing N N 351 TRP CA CB sing N N 352 TRP CA HA sing N N 353 TRP C O doub N N 354 TRP C OXT sing N N 355 TRP CB CG sing N N 356 TRP CB HB2 sing N N 357 TRP CB HB3 sing N N 358 TRP CG CD1 doub Y N 359 TRP CG CD2 sing Y N 360 TRP CD1 NE1 sing Y N 361 TRP CD1 HD1 sing N N 362 TRP CD2 CE2 doub Y N 363 TRP CD2 CE3 sing Y N 364 TRP NE1 CE2 sing Y N 365 TRP NE1 HE1 sing N N 366 TRP CE2 CZ2 sing Y N 367 TRP CE3 CZ3 doub Y N 368 TRP CE3 HE3 sing N N 369 TRP CZ2 CH2 doub Y N 370 TRP CZ2 HZ2 sing N N 371 TRP CZ3 CH2 sing Y N 372 TRP CZ3 HZ3 sing N N 373 TRP CH2 HH2 sing N N 374 TRP OXT HXT sing N N 375 TYR N CA sing N N 376 TYR N H sing N N 377 TYR N H2 sing N N 378 TYR CA C sing N N 379 TYR CA CB sing N N 380 TYR CA HA sing N N 381 TYR C O doub N N 382 TYR C OXT sing N N 383 TYR CB CG sing N N 384 TYR CB HB2 sing N N 385 TYR CB HB3 sing N N 386 TYR CG CD1 doub Y N 387 TYR CG CD2 sing Y N 388 TYR CD1 CE1 sing Y N 389 TYR CD1 HD1 sing N N 390 TYR CD2 CE2 doub Y N 391 TYR CD2 HD2 sing N N 392 TYR CE1 CZ doub Y N 393 TYR CE1 HE1 sing N N 394 TYR CE2 CZ sing Y N 395 TYR CE2 HE2 sing N N 396 TYR CZ OH sing N N 397 TYR OH HH sing N N 398 TYR OXT HXT sing N N 399 VAL N CA sing N N 400 VAL N H sing N N 401 VAL N H2 sing N N 402 VAL CA C sing N N 403 VAL CA CB sing N N 404 VAL CA HA sing N N 405 VAL C O doub N N 406 VAL C OXT sing N N 407 VAL CB CG1 sing N N 408 VAL CB CG2 sing N N 409 VAL CB HB sing N N 410 VAL CG1 HG11 sing N N 411 VAL CG1 HG12 sing N N 412 VAL CG1 HG13 sing N N 413 VAL CG2 HG21 sing N N 414 VAL CG2 HG22 sing N N 415 VAL CG2 HG23 sing N N 416 VAL OXT HXT sing N N 417 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '6-({[(1R,3S)-3-(aminomethyl)cyclohexyl]methyl}amino)pyridine-3-carboxamide' 4H1 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1P9P _pdbx_initial_refinement_model.details ? #